Citation:

PANGAEA.949645

Name: Seawater carbonate chemistry and physiological energetics of juvenile clams Ruditapes decussatus
Published: 2011
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Animalia; Behaviour; Benthic animals; Benthos; Bottles or small containers/Aquaria (<20 L); Coast and continental shelf; Laboratory experiment; Mollusca; North Atlantic; Other metabolic rates; Respiration; Ruditapes decussatus; Single species; Temperate

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Abstract:

Effects of coastal ocean acidification, other than calcification, were tested on juvenile clams (Ruditapes decussatus) during a controlled CO2 perturbation experiment. The carbonate chemistry of natural (control) seawater was manipulated by injecting CO2 to attain two reduced pH levels: -0.4 and -0.7 pH units as compared with the control seawater. After 87 days of exposure, we found that the acidification conditions tested in this experiment significantly reduced the clearance, ingestion and respiration rates, and increased the ammonia excretion rate of R. decussatus seeds. Reduced ingestion combined with increased excretion is generally associated with a reduced energy input, which will likely contribute to a slower growth of the clams in a future high CO2 coastal ocean. These results emphasize the need for management policies to mitigate the adverse effects of global change on aquaculture, which is an economically relevant activity in most coastal areas worldwide.

Keyword(s):

Animalia; Behaviour; Benthic animals; Benthos; Bottles or small containers/Aquaria (<20 L); Coast and continental shelf; Laboratory experiment; Mollusca; North Atlantic; Other metabolic rates; Respiration; Ruditapes decussatus; Single species; Temperate

Supplement to:

Fernández-Reiriz, Ma José; Range, P; Alvarez-Salgado, Xose Anton; Labarta, Uxio (2011): Physiological energetics of juvenile clams Ruditapes decussatus in a high CO2 coastal ocean. Marine Ecology Progress Series, 433, 97-105, https://doi.org/10.3354/meps09062

Further details:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2021): seacarb: seawater carbonate chemistry with R. R package version 3.2.16. https://cran.r-project.org/web/packages/seacarb/index.html

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Comment:

In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2022-10-12.

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Type	Type		Fernández-Reiriz, Ma José		Study
2	Species, unique identification	Species UID		Fernández-Reiriz, Ma José
3	Species, unique identification (URI)	Species UID (URI)		Fernández-Reiriz, Ma José
4	Species, unique identification (Semantic URI)	Species UID (Semantic URI)		Fernández-Reiriz, Ma José
5	Treatment	Treat		Fernández-Reiriz, Ma José
6	Date	Date		Fernández-Reiriz, Ma José
7	Size	Size	mm	Fernández-Reiriz, Ma José		min
8	Size	Size	mm	Fernández-Reiriz, Ma José		max
9	Dry mass	Dry m	g	Fernández-Reiriz, Ma José
10	Dry mass, standard deviation	Dry m std dev	±	Fernández-Reiriz, Ma José
11	Ash	Ash	%	Fernández-Reiriz, Ma José
12	Ash, standard deviation	Ash std dev	±	Fernández-Reiriz, Ma José
13	Individuals	Ind	#	Fernández-Reiriz, Ma José
14	Clearance rate	CR	ml/h	Fernández-Reiriz, Ma José
15	Clearance rate, standard deviation	CR std dev	±	Fernández-Reiriz, Ma José
16	Clearance rate	CR	ml/g/h	Fernández-Reiriz, Ma José		specific, per organic matter
17	Clearance rate, standard deviation	CR std dev	±	Fernández-Reiriz, Ma José		specific, per organic matter
18	Ingestion rate, organic weight	IR org w	µg/h	Fernández-Reiriz, Ma José
19	Ingestion rate, standard deviation	IR std dev	±	Fernández-Reiriz, Ma José
20	Ingestion rate, organic weight, per organic weight	IR org w/org w	µg/mg/h	Fernández-Reiriz, Ma José
21	Ingestion rate, standard deviation	IR std dev	±	Fernández-Reiriz, Ma José
22	Individuals	Ind	#	Fernández-Reiriz, Ma José
23	Respiration rate, oxygen	Resp O2	ml/h	Fernández-Reiriz, Ma José
24	Respiration rate, standard deviation	Resp std dev	±	Fernández-Reiriz, Ma José
25	Respiration rate, oxygen, per organic weight	Resp O2/org w	µl/mg/h	Fernández-Reiriz, Ma José
26	Respiration rate, standard deviation	Resp std dev	±	Fernández-Reiriz, Ma José
27	Individuals	Ind	#	Fernández-Reiriz, Ma José
28	Ammonia excretion	NH3/[NH4]+ exc	µg/h	Fernández-Reiriz, Ma José
29	Ammonia excretion, relative, standard deviation	NH3/[NH4]+ exc std dev	±	Fernández-Reiriz, Ma José
30	Ammonia excretion, per organic weight	NH3/[NH4]+ exc/org w	µg/mg/h	Fernández-Reiriz, Ma José
31	Ammonia excretion, relative, standard deviation	NH3/[NH4]+ exc std dev	±	Fernández-Reiriz, Ma José
32	Respiration rate/ammonia excretion	O/N		Fernández-Reiriz, Ma José
33	Temperature, water	Temp	°C	Fernández-Reiriz, Ma José
34	Temperature, water, standard error	T std e	±	Fernández-Reiriz, Ma José
35	Salinity	Sal		Fernández-Reiriz, Ma José
36	Salinity, standard error	Sal std e	±	Fernández-Reiriz, Ma José
37	pH	pH		Fernández-Reiriz, Ma José	Potentiometric	total scale
38	pH, standard error	pH std e	±	Fernández-Reiriz, Ma José	Potentiometric	total scale
39	Alkalinity, total	AT	µmol/kg	Fernández-Reiriz, Ma José	Potentiometric titration
40	Alkalinity, total, standard error	AT std e	±	Fernández-Reiriz, Ma José	Potentiometric titration
41	Carbon, inorganic, dissolved	DIC	µmol/kg	Fernández-Reiriz, Ma José	Calculated
42	Carbon, inorganic, dissolved, standard error	DIC std e	±	Fernández-Reiriz, Ma José	Calculated
43	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Fernández-Reiriz, Ma José	Calculated
44	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air), standard error	pCO2water_SST_wet std e	±	Fernández-Reiriz, Ma José	Calculated
45	Calcite saturation state	Omega Cal		Fernández-Reiriz, Ma José	Calculated
46	Calcite saturation state, standard error	Omega Cal std e	±	Fernández-Reiriz, Ma José	Calculated
47	Aragonite saturation state	Omega Arg		Fernández-Reiriz, Ma José	Calculated
48	Aragonite saturation state, standard error	Omega Arg std e	±	Fernández-Reiriz, Ma José	Calculated
49	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
50	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
51	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
52	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
53	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
54	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
55	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
56	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
57	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

360 data points

Data

Download dataset as tab-delimited text — use the following character encoding:

1 Type (Study)	2 Species UID	3 Species UID (URI)	4 Species UID (Semantic URI)	5 Treat	6 Date	7 Size [mm] (min)	8 Size [mm] (max)	9 Dry m [g]	10 Dry m std dev [±]	11 Ash [%]	12 Ash std dev [±]	13 Ind [#]	14 CR [ml/h]	15 CR std dev [±]	16 CR [ml/g/h] (specific, per organic matter)	17 CR std dev [±] (specific, per organic matter)	18 IR org w [µg/h]	19 IR std dev [±]	20 IR org w/org w [µg/mg/h]	21 IR std dev [±]	22 Ind [#]	23 Resp O2 [ml/h]	24 Resp std dev [±]	25 Resp O2/org w [µl/mg/h]	26 Resp std dev [±]	27 Ind [#]	28 NH3/[NH4]+ exc [µg/h]	29 NH3/[NH4]+ exc std dev [±]	30 NH3/[NH4]+ exc/org w [µg/mg/h]	31 NH3/[NH4]+ exc std dev [±]	32 O/N	33 Temp [°C]	34 T std e [±]	35 Sal	36 Sal std e [±]	37 pH (total scale, Potentiometric)	38 pH std e [±] (total scale, Potentiometric)	39 AT [µmol/kg] (Potentiometric titration)	40 AT std e [±] (Potentiometric titration)	41 DIC [µmol/kg] (Calculated)	42 DIC std e [±] (Calculated)	43 pCO2water_SST_wet [µatm] (Calculated)	44 pCO2water_SST_wet std e [±] (Calculated)	45 Omega Cal (Calculated)	46 Omega Cal std e [±] (Calculated)	47 Omega Arg (Calculated)	48 Omega Arg std e [±] (Calculated)	49 CSC flag (Calculated using seacarb afte...)	50 CO2 [µmol/kg] (Calculated using seacarb afte...)	51 fCO2water_SST_wet [µatm] (Calculated using seacarb afte...)	52 pCO2water_SST_wet [µatm] (Calculated using seacarb afte...)	53 [HCO3]- [µmol/kg] (Calculated using seacarb afte...)	54 [CO3]2- [µmol/kg] (Calculated using seacarb afte...)	55 DIC [µmol/kg] (Calculated using seacarb afte...)	56 Omega Arg (Calculated using seacarb afte...)	57 Omega Cal (Calculated using seacarb afte...)
laboratory	Ruditapes decussatus	marinespecies.org	urn:lsid:marinespecies.org:taxname:231749	Initial	2009-07-27T00:00	7	9	0.00433	0.31	13.65	0.26	100	39.65	5.89	10860	1610	17.88	2.66	4.90	0.73	50	0.33	0.03	91.51	7.45	50	2.60	0.05	0.71	0.010	158.6
laboratory	Ruditapes decussatus	marinespecies.org	urn:lsid:marinespecies.org:taxname:231749	pH=-0.7	2009-10-06T00:00	10	13	0.01509	2.05	14.56	1.08	30	144.94	41.30	11250	3210	72.47	20.65	5.63	1.60	30	0.31	0.01	23.91	2.76	30	4.65	0.84	0.44	0.017	83.3	21.6	0.06	31.36	0.31	7.53	0.04	3911	6	3895	24.6	3702	345	2.41	0.19	1.58	0.12	8	84.19	2661.42	2670.32	3666.58	108.64	3859.41	1.73	2.68
laboratory	Ruditapes decussatus	marinespecies.org	urn:lsid:marinespecies.org:taxname:231749	pH=-0.7	2009-10-06T00:00	14	20	0.03855	0.20	13.99	0.64	15	479.27	92.79	14450	3680	239.63	60.93	7.23	1.84	15	0.27	0.03	8.08	0.69	15	3.70	0.84	0.11	0.030	91.2	21.6	0.06	31.36	0.31	7.53	0.04	3911	6	3895	24.6	3702	345	2.41	0.19	1.58	0.12	8	84.19	2661.42	2670.32	3666.58	108.64	3859.41	1.73	2.68
laboratory	Ruditapes decussatus	marinespecies.org	urn:lsid:marinespecies.org:taxname:231749	pH=-0.4	2009-10-06T00:00	10	13	0.01547	0.48	14.47	0.53	30	288.63	37.41	21820	2830	158.46	20.54	11.98	1.55	30	0.21	0.08	22.67	2.12	30	2.60	0.35	0.18	0.030	100.9	21.6	0.06	31.36	0.31	7.82	0.02	3920	3	3749	8.4	1813	71	4.44	0.14	2.91	0.09	8	40.85	1291.48	1295.80	3469.26	200.43	3710.54	3.20	4.94
laboratory	Ruditapes decussatus	marinespecies.org	urn:lsid:marinespecies.org:taxname:231749	pH=-0.4	2009-10-06T00:00	14	20	0.03991	5.79	13.97	1.42	15	533.39	92.79	15550	2710	292.83	50.94	8.54	1.49	15	0.24	0.09	7.14	0.28	15	3.28	0.43	0.10	0.010	91.4	21.6	0.06	31.36	0.31	7.82	0.02	3920	3	3749	8.4	1813	71	4.44	0.14	2.91	0.09	8	40.85	1291.48	1295.80	3469.26	200.43	3710.54	3.20	4.94
laboratory	Ruditapes decussatus	marinespecies.org	urn:lsid:marinespecies.org:taxname:231749	pH=control	2009-10-06T00:00	10	13	0.01659	0.34	13.86	0.40	30	309.53	34.41	21660	2410	183.84	8.34	12.86	0.58	30	0.57	0.11	36.45	2.73	30	1.93	0.61	0.14	0.040	369.0	21.6	0.06	31.36	0.31	8.16	0.02	3910	3	3500	15.1	730	36	8.61	0.26	5.64	0.17	8	16.39	518.07	519.80	3044.67	384.82	3445.88	6.14	9.48
laboratory	Ruditapes decussatus	marinespecies.org	urn:lsid:marinespecies.org:taxname:231749	pH=control	2009-10-06T00:00	14	20	0.04155	4.75	14.96	0.61	15	624.27	45.62	17870	1310	391.42	35.39	11.21	0.82	15	0.51	0.14	16.23	1.08	15	1.85	0.48	0.05	0.010	344.5	21.6	0.06	31.36	0.31	8.16	0.02	3910	3	3500	15.1	730	36	8.61	0.26	5.64	0.17	8	16.39	518.07	519.80	3044.67	384.82	3445.88	6.14	9.48