Citation:

PANGAEA.948103

Name: Seawater carbonate chemistry and shell growth of Atlanta ariejansseni
Published: 2021
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Animalia; Atlanta ariejansseni; Containers and aquaria (20-1000 L or < 1 m**2); Growth/Morphology; Laboratory experiment; Mollusca; Open ocean; Pelagos; Single species; South Atlantic; Temperate; Zooplankton

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Abstract:

The atlantid heteropods represent the only predatory, aragonite shelled zooplankton. Atlantid shell production is likely to be sensitive to ocean acidification (OA), and yet we know little about their mechanisms of calcification, or their response to changing ocean chemistry. Here, we present the first study into calcification and gene expression effects of short-term OA exposure on juvenile atlantids across three pH scenarios: mid-1960s, ambient and 2050 conditions. Calcification and gene expression indicate a distinct response to each treatment. Shell extension and shell volume were reduced from the mid-1960s to ambient conditions, suggesting that calcification is already limited in today's South Atlantic. However, shell extension increased from ambient to 2050 conditions. Genes involved in protein synthesis were consistently upregulated, whereas genes involved in organismal development were downregulated with decreasing pH. Biomineralization genes were upregulated in the mid-1960s and 2050 conditions, suggesting that any deviation from ambient carbonate chemistry causes stress, resulting in rapid shell growth. We conclude that atlantid calcification is likely to be negatively affected by future OA. However, we also found that plentiful food increased shell extension and shell thickness, and so synergistic factors are likely to impact the resilience of atlantids in an acidifying ocean.

Keyword(s):

Animalia; Atlanta ariejansseni; Containers and aquaria (20-1000 L or < 1 m**2); Growth/Morphology; Laboratory experiment; Mollusca; Open ocean; Pelagos; Single species; South Atlantic; Temperate; Zooplankton

Supplement to:

Wall-Palmer, Deborah; Mekkes, Lisette; Ramos-Silva, Paula; Dämmer, Linda K; Goetze, Erica; Bakker, Karel; Duijm, Elza; Peijnenburg, Katja T C A (2021): The impacts of past, present and future ocean chemistry on predatory planktonic snails. Royal Society Open Science, 8(8), 202265, https://doi.org/10.1098/rsos.202265

Further details:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2021): seacarb: seawater carbonate chemistry with R. R package version 3.2.16. https://cran.r-project.org/web/packages/seacarb/index.html

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Coverage:

Latitude: -41.150000 * Longitude: -30.000000

Date/Time Start: 2017-10-01T00:00:00 * Date/Time End: 2017-10-31T00:00:00

Event(s):

Southern_Subtropical_Convergence_Zone * Latitude: -41.150000 * Longitude: -30.000000 * Date/Time Start: 2017-10-01T00:00:00 * Date/Time End: 2017-10-31T00:00:00 * Method/Device: Experiment (EXP)

Comment:

In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2022-10-21.

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Type	Type		Wall-Palmer, Deborah		Study
2	Species, unique identification	Species UID		Wall-Palmer, Deborah
3	Species, unique identification (URI)	Species UID (URI)		Wall-Palmer, Deborah
4	Species, unique identification (Semantic URI)	Species UID (Semantic URI)		Wall-Palmer, Deborah
5	Treatment	Treat		Wall-Palmer, Deborah
6	Experiment day	Exp day	day	Wall-Palmer, Deborah
7	Replicates	Repl	#	Wall-Palmer, Deborah
8	Carbon, inorganic, dissolved	DIC	µmol/kg	Wall-Palmer, Deborah
9	Carbon, inorganic, dissolved, standard deviation	DIC std dev	±	Wall-Palmer, Deborah
10	Alkalinity, total	AT	µmol/kg	Wall-Palmer, Deborah	Calculated using CO2SYS
11	Alkalinity, total, standard deviation	AT std dev	±	Wall-Palmer, Deborah	Calculated using CO2SYS
12	pH	pH		Wall-Palmer, Deborah		NBS scale
13	pH, standard deviation	pH std dev	±	Wall-Palmer, Deborah		NBS scale
14	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Wall-Palmer, Deborah	Calculated using CO2SYS
15	Partial pressure of carbon dioxide, standard deviation	pCO2 std dev	±	Wall-Palmer, Deborah	Calculated using CO2SYS
16	Aragonite saturation state	Omega Arg		Wall-Palmer, Deborah	Calculated using CO2SYS
17	Aragonite saturation state, standard deviation	Omega Arg std dev	±	Wall-Palmer, Deborah	Calculated using CO2SYS
18	Replicates	Repl	#	Wall-Palmer, Deborah		for the shell extension
19	Shell linear extension	Shell ext	mm	Wall-Palmer, Deborah
20	Shell linear extension, standard deviation	Shell ext std dev	±	Wall-Palmer, Deborah
21	Replicates	Repl	#	Wall-Palmer, Deborah		for volume, thickness and diameter
22	Volume	Vol	µm³	Wall-Palmer, Deborah		shell grown
23	Volume, standard deviation	Vol std dev	±	Wall-Palmer, Deborah		shell grown
24	Shell thickness	Shell thick	mm	Wall-Palmer, Deborah		shell pre-exp
25	Shell thickness, standard deviation	Shell thick std dev	±	Wall-Palmer, Deborah		shell pre-exp
26	Shell thickness	Shell thick	mm	Wall-Palmer, Deborah		shell grown
27	Shell thickness, standard deviation	Shell thick std dev	±	Wall-Palmer, Deborah		shell grown
28	Shell diameter	Shell diam	mm	Wall-Palmer, Deborah
29	Shell diameter, standard deviation	Shell diam std dev	±	Wall-Palmer, Deborah
30	Shell linear extension	Shell ext	mm	Wall-Palmer, Deborah		mean total
31	Shell linear extension, standard deviation	Shell ext std dev	±	Wall-Palmer, Deborah		mean total
32	Shell linear extension	Shell ext	mm	Wall-Palmer, Deborah		maximum total
33	Shell length, growth rate	Shell l µ	mm/day	Wall-Palmer, Deborah		mean
34	Shell length, growth rate	Shell l µ	mm/day	Wall-Palmer, Deborah		maximum
35	Temperature, water	Temp	°C	Wall-Palmer, Deborah
36	Temperature, water, standard deviation	Temp std dev	±	Wall-Palmer, Deborah
37	Salinity	Sal		Wall-Palmer, Deborah
38	Salinity, standard deviation	Sal std dev	±	Wall-Palmer, Deborah
39	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
40	pH	pH		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	total scale
41	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
42	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
43	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
44	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
45	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
46	Alkalinity, total	AT	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
47	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
48	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

388 data points

Data

Download dataset as tab-delimited text — use the following character encoding:

1 Type (Study)	2 Species UID	3 Species UID (URI)	4 Species UID (Semantic URI)	5 Treat	6 Exp day [day]	7 Repl [#]	8 DIC [µmol/kg]	9 DIC std dev [±]	10 AT [µmol/kg] (Calculated using CO2SYS)	11 AT std dev [±] (Calculated using CO2SYS)	12 pH (NBS scale)	13 pH std dev [±] (NBS scale)	14 pCO2water_SST_wet [µatm] (Calculated using CO2SYS)	15 pCO2 std dev [±] (Calculated using CO2SYS)	16 Omega Arg (Calculated using CO2SYS)	17 Omega Arg std dev [±] (Calculated using CO2SYS)	18 Repl [#] (for the shell extension)	19 Shell ext [mm]	20 Shell ext std dev [±]	21 Repl [#] (for volume, thickness and dia...)	22 Vol [µm³] (shell grown)	23 Vol std dev [±] (shell grown)	24 Shell thick [mm] (shell pre-exp)	25 Shell thick std dev [±] (shell pre-exp)	26 Shell thick [mm] (shell grown)	27 Shell thick std dev [±] (shell grown)	28 Shell diam [mm]	29 Shell diam std dev [±]	30 Shell ext [mm] (mean total)	31 Shell ext std dev [±] (mean total)	32 Shell ext [mm] (maximum total)	33 Shell l µ [mm/day] (mean)	34 Shell l µ [mm/day] (maximum)	35 Temp [°C]	36 Temp std dev [±]	37 Sal	38 Sal std dev [±]	39 CSC flag (Calculated using seacarb afte...)	40 pH (total scale, Calculated using...)	41 CO2 [µmol/kg] (Calculated using seacarb afte...)	42 fCO2water_SST_wet [µatm] (Calculated using seacarb afte...)	43 pCO2water_SST_wet [µatm] (Calculated using seacarb afte...)	44 [HCO3]- [µmol/kg] (Calculated using seacarb afte...)	45 [CO3]2- [µmol/kg] (Calculated using seacarb afte...)	46 AT [µmol/kg] (Calculated using seacarb afte...)	47 Omega Arg (Calculated using seacarb afte...)	48 Omega Cal (Calculated using seacarb afte...)
laboratory	Atlanta ariejansseni	marinespecies.org	urn:lsid:marinespecies.org:taxname:883765	ambient control	0		2112		2338		8.16		410		2.51																			15.7		35.14		27	8.05	14.90	406.68	408.15	1932.84	164.25	2338.80	2.52	3.91
laboratory	Atlanta ariejansseni	marinespecies.org	urn:lsid:marinespecies.org:taxname:883765	ambient control	3		2103	2	2308	0	8.13	0.00	441	9	2.27	0.02																		15.0	0.2	35.10	0.04	27	8.02	16.22	433.15	434.72	1936.86	149.92	2308.60	2.29	3.57
laboratory	Atlanta ariejansseni	marinespecies.org	urn:lsid:marinespecies.org:taxname:883765	mid-1960s	0		2110		2352		8.18		391		2.65																			16.0		35.20		27	8.06	14.07	387.57	388.96	1922.82	173.10	2350.20	2.65	4.12
laboratory	Atlanta ariejansseni	marinespecies.org	urn:lsid:marinespecies.org:taxname:883765	mid-1960s	3		2109	6	2341	5	8.19	0.02	378	18	2.53	0.10	61	0.136	0.022	14	963000	210000	0.00581	0.00089	0.01158	0.00181	0.400	0.049						14.2	0.2	35.20	0.04	27	8.08	14.25	371.74	373.10	1927.56	167.19	2341.50	2.55	3.98
laboratory	Atlanta ariejansseni	marinespecies.org	urn:lsid:marinespecies.org:taxname:883765	ambient	0		2110		2339		8.16		405		2.53																			15.6		35.13		27	8.05	14.92	405.92	407.38	1931.51	163.56	2335.90	2.51	3.90
laboratory	Atlanta ariejansseni	marinespecies.org	urn:lsid:marinespecies.org:taxname:883765	ambient	3		2139	10	2350	2	8.14	0.02	425	20	2.33	0.08	63	0.124	0.016	15	755000	246000	0.00596	0.00061	0.01151	0.00130	0.361	0.072						14.1	0.5	35.10	0.05	27	8.03	16.40	426.31	427.87	1971.14	151.45	2345.90	2.31	3.61
laboratory	Atlanta ariejansseni	marinespecies.org	urn:lsid:marinespecies.org:taxname:883765	2050	0		2150		2329		8.05		553		2.05																			16.3		35.25		27	7.93	19.58	544.31	546.26	1995.70	134.71	2328.80	2.07	3.21
laboratory	Atlanta ariejansseni	marinespecies.org	urn:lsid:marinespecies.org:taxname:883765	2050	3		2154	13	2312	11	8.03	0.00	564	5	1.84	0.02	60	0.155	0.026	14	871000	270000	0.00568	0.00073	0.01058	0.00129	0.386	0.096						14.1	0.3	35.20	0.06	27	7.92	21.55	560.22	562.28	2012.12	120.34	2310.90	1.84	2.86
laboratory	Atlanta ariejansseni	marinespecies.org	urn:lsid:marinespecies.org:taxname:883765	ambient	0		2112		2358		8.15		426		2.73																			18.4		35.46		27	8.03	14.41	426.22	427.70	1921.67	175.92	2355.10	2.71	4.19
laboratory	Atlanta ariejansseni	marinespecies.org	urn:lsid:marinespecies.org:taxname:883765	ambient	3	8	2130		2345		8.15		417		2.37														0.208	0.065	0.299	0.069	0.100	14.2		35.34		27	8.04	15.85	413.82	415.34	1958.63	155.51	2343.80	2.37	3.70
laboratory	Atlanta ariejansseni	marinespecies.org	urn:lsid:marinespecies.org:taxname:883765	ambient	5	10	2141		2368		8.17		399		2.49														0.231	0.077	0.374	0.046	0.075	14.2		35.44		27	8.06	15.15	395.65	397.10	1962.26	163.59	2366.80	2.49	3.89
laboratory	Atlanta ariejansseni	marinespecies.org	urn:lsid:marinespecies.org:taxname:883765	ambient	7	10	2135		2360		8.17		394		2.45														0.306	0.087	0.456	0.044	0.065	13.7		35.41		27	8.06	15.28	392.85	394.29	1959.26	160.46	2356.60	2.44	3.81
laboratory	Atlanta ariejansseni	marinespecies.org	urn:lsid:marinespecies.org:taxname:883765	ambient	9	9	2151		2364		8.14		426		2.35														0.271	0.109	0.486	0.030	0.054	14.0		35.42		27	8.03	16.46	427.24	428.81	1981.51	153.02	2360.20	2.33	3.64
laboratory	Atlanta ariejansseni	marinespecies.org	urn:lsid:marinespecies.org:taxname:883765	ambient	11	7	2173		2378		8.14		437		2.29														0.408	0.148	0.599	0.037	0.054	13.4		35.38		27	8.03	16.85	429.17	430.76	2004.58	151.57	2379.30	2.31	3.60