Pingel, Martin; Reineke, Annette; Leyer, Ilona (2022): Effects of management on soil bacterial and fungal diversity (Shannon Index) of the upper soil layer in nine German vineyards in 2016 [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.947998, In: Pingel, M et al. (2022): Effects of soil management on vegetation parameters, soil parameters, soil microbial diversity and soil functions in nine vineyards in Rhine-Hesse, Germany, studied from 2016-2017 [dataset bundled publication]. PANGAEA, https://doi.org/10.1594/PANGAEA.948046
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Abstract:
Nine experimental vineyards were sampled in the Rhein-Hesse area, Germany, in June 2016. Each vineyard exhibited four experimental plots with different soil management types (complete cover, herbal seed mixture cover, alternating tillage, and complete tillage).
In two inter-rows of each vineyard, a pooled sample of eight soil cores of the upper soil layer (0-10 cm) was used for DNA extraction. The samples were analyzed using Illumina Sequencing by an external sequencing company. The resulting data were further processed to obtain a matrix of OTU and read counts for soil bacteria and soil fungi. Shannon Indices were calculated from these matrixes as metrics of bacterial and fungal diversity.
Keyword(s):
Project(s):
Promoting Ecosystem Services in Grapes (PromESSinG)
Funding:
Coverage:
Median Latitude: 49.898013 * Median Longitude: 8.142919 * South-bound Latitude: 49.821233 * West-bound Longitude: 7.972972 * North-bound Latitude: 49.946697 * East-bound Longitude: 8.354481
Date/Time Start: 2016-06-14T00:00:00 * Date/Time End: 2016-06-14T00:00:00
Minimum Elevation: 97.6 m * Maximum Elevation: 199.3 m
Event(s):
MI_16_1 * Latitude: 49.945511 * Longitude: 7.994911 * Date/Time: 2016-06-14T00:00:00 * Elevation: 159.4 m * Location: Rhein-Hesse, RP, Germany * Method/Device: Next-generation sequencing (NGS)
Parameter(s):
| # | Name | Short Name | Unit | Principal Investigator | Method/Device | Comment |
|---|---|---|---|---|---|---|
| 1 | Event label | Event | Pingel, Martin | |||
| 2 | DATE/TIME | Date/Time | Pingel, Martin | Geocode | ||
| 3 | LATITUDE | Latitude | Pingel, Martin | Geocode | ||
| 4 | LONGITUDE | Longitude | Pingel, Martin | Geocode | ||
| 5 | Elevation of event | Elevation | m | Pingel, Martin | ||
| 6 | Depth, soil, minimum | Depth soil min | m | Pingel, Martin | Horizon of the soil sample, minimum | |
| 7 | Depth, soil, maximum | Depth soil max | m | Pingel, Martin | Horizon of the soil sample, maximun | |
| 8 | Row | Row | Pingel, Martin | ID of the inter-row, which was sampled, two per plot | ||
| 9 | Plot | Plot | Pingel, Martin | ID of the plot | ||
| 10 | Vineyard | Vineyard | Pingel, Martin | ID of the vineyard | ||
| 11 | Treatment | Treat | Pingel, Martin | In each vineyard 4 treatments were prepaired: tillage, alternating tillage, complete cover, herbal mixture | ||
| 12 | Tillage events | Tillage events | # | Pingel, Martin | number of tillage events that were conducted in the particular inter-row before soil sampling | |
| 13 | Shannon Diversity Index | H' | Pingel, Martin | for bacteria | ||
| 14 | Shannon Diversity Index | H' | Pingel, Martin | for fungi |
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
648 data points