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Charrieau, Laurie M; Nagai, Yukiko; Kimoto, Katsunori; Below, Beatrice; Fujita, Kazuhiko; Toyofuku, Takashi (2022): Seawater carbonate chemistry and test density, trace elements ratios of Peneroplis spp [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.947963

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Abstract:
Large Benthic Foraminifera are a crucial component of coral-reef ecosystems, which are currently threatened by ocean acidification. We conducted culture experiments to evaluate the impact of low pH on survival and test dissolution of the symbiont-bearing species Peneroplis spp., and to observe potential calcification recovery when specimens are placed back under reference pH value (7.9). We found that Peneroplis spp. displayed living activity up to 3 days at pH 6.9 (Omega cal < 1) or up to 1 month at pH 7.4 (Omega cal > 1), despite the dark and unfed conditions. Dissolution features were observed under low Omega cal values, such as changes in test density, peeled extrados layers, and decalcified tests with exposed organic linings. A new calcification phase started when specimens were placed back at reference pH. This calcification's resumption was an addition of new chambers without reparation of the dissolved parts, which is consistent with the porcelaneous calcification pathway of Peneroplis spp. The most decalcified specimens displayed a strong survival response by adding up to 8 new chambers, and the contribution of food supply in this process was highlighted. These results suggest that porcelaneous LBF species have some recovery abilities to short exposure (e.g., 3 days to 1 month) to acidified conditions. However, the geochemical signature of trace elements in the new calcite was impacted, and the majority of the new chambers were distorted and resulted in abnormal tests, which might hinder the specimens' reproduction and thus their survival on the long term.
Keyword(s):
Benthos; Biomass/Abundance/Elemental composition; Bottles or small containers/Aquaria (<20 L); Calcification/Dissolution; Chromista; Coast and continental shelf; Foraminifera; Heterotrophic prokaryotes; Laboratory experiment; North Pacific; Peneroplis sp.; Single species; Temperate
Supplement to:
Charrieau, Laurie M; Nagai, Yukiko; Kimoto, Katsunori; Dissard, Delphine; Below, Beatrice; Fujita, Kazuhiko; Toyofuku, Takashi (2022): The coral reef-dwelling Peneroplis spp. shows calcification recovery to ocean acidification conditions. Scientific Reports, 12(1), 6373, https://doi.org/10.1038/s41598-022-10375-w
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2021): seacarb: seawater carbonate chemistry with R. R package version 3.2.16. https://cran.r-project.org/web/packages/seacarb/index.html
Coverage:
Latitude: 26.383300 * Longitude: 128.000000
Date/Time Start: 2019-05-01T00:00:00 * Date/Time End: 2019-05-31T00:00:00
Event(s):
Ikeijima_Island * Latitude: 26.383300 * Longitude: 128.000000 * Date/Time Start: 2019-05-01T00:00:00 * Date/Time End: 2019-05-31T00:00:00 * Method/Device: Experiment (EXP)
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2022-09-06.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1TypeTypeCharrieau, Laurie MStudy
2SpeciesSpeciesCharrieau, Laurie M
3ExperimentExpCharrieau, Laurie M
4Experiment dayExp daydayCharrieau, Laurie M
5Treatment: pHT:pHCharrieau, Laurie M
6ReplicateReplCharrieau, Laurie M
7DensityDensityg/cm3Charrieau, Laurie MTest
8TreatmentTreatCharrieau, Laurie M
9IdentificationIDCharrieau, Laurie M
10Boron/Calcium ratioB/Caµmol/molCharrieau, Laurie M
11Boron/Calcium ratio, standard deviationB/Ca std dev±Charrieau, Laurie M
12Zinc/Calcium ratioZn/Cammol/molCharrieau, Laurie M
13Zinc/Calcium ratio, standard deviationZn/Ca std dev±Charrieau, Laurie M
14Magnesium/Calcium ratioMg/Cammol/molCharrieau, Laurie M
15Magnesium/Calcium ratio, standard deviationMg/Ca std dev±Charrieau, Laurie M
16Strontium/Calcium ratioSr/Cammol/molCharrieau, Laurie M
17Strontium/Calcium ratio, standard deviationSr/Ca std dev±Charrieau, Laurie M
18Manganese/Calcium ratioMn/Caµmol/molCharrieau, Laurie M
19Manganese/Calcium ratio, standard deviationMn/Ca std dev±Charrieau, Laurie M
20Temperature, waterTemp°CCharrieau, Laurie M
21SalinitySalCharrieau, Laurie M
22Salinity, standard deviationSal std dev±Charrieau, Laurie M
23pHpHCharrieau, Laurie MPotentiometrictotal scale
24pH, standard deviationpH std dev±Charrieau, Laurie MPotentiometrictotal scale
25Alkalinity, totalATµmol/kgCharrieau, Laurie MPotentiometric titration
26Alkalinity, total, standard deviationAT std dev±Charrieau, Laurie MPotentiometric titration
27Calcite saturation stateOmega CalCharrieau, Laurie MCalculated using CO2calc
28Carbonate ion[CO3]2-µmol/kgCharrieau, Laurie MCalculated using CO2calc
29CalciumCa2+mmol/kgCharrieau, Laurie M
30Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
31Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
32Carbon dioxide, standard deviationCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
33Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
34Fugacity of carbon dioxide in seawater, standard deviationfCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
35Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
36Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
37Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
38Bicarbonate ion, standard deviation[HCO3]- std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
39Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
40Carbonate ion, standard deviation[CO3]2- std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
41Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
42Carbon, inorganic, dissolved, standard deviationDIC std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
43Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
44Aragonite saturation state, standard deviationOmega Arg std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
45Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
46Calcite saturation state, standard deviationOmega Cal std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
618 data points

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