Titschack, Jürgen; Schmitt, Kira; Baum, Daniel; Timann, Christian; Lemke, Arne-Jörn (2022): CT raw data and polyp-cavity segmentation (both DICOM format) of coral colony fragment TROND-CT10 [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.947308
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Published: 2022-08-22 • DOI registered: 2023-02-25
Abstract:
Sample TROND-CT10 was dredged by Wolfgang Berger in September 1980 in Trondheim fjord, Norway (63°36'N, 10°32'E, 50-90\,m water depth) and we are grateful for getting access to the sample through MARUM administration. The specimen was scanned with a Philips Brilliance iCT Elite 256 computer tomograph (x-ray source, voltage: 120 kV; current: 300 mA; physical resolution: 0.212 in xy-direction, respectively, 0.625 mm in z-direction; re-construction interval in z-direction: 0.3 mm; reconstruction: filtered Back Projection (fBP) mode and a bone kernel (YB (Enhanced)). Polyp-cavity (calice) segmentation was perfromed with the ZIB edition of the Amira software (Stalling et al., 2005; http://amira.zib.de) based on the new method describes in Schmitt et al. (submitted).
Keyword(s):
Related to:
Schmitt, Kira; Titschack, Jürgen; Baum, Daniel (2022): Polyp-Cavity Segmentation of Cold-Water Corals guided by Ambient Occlusion and Ambient Curvature. T. W. Kuhlen, R. G. Raidou, and B. Sommer (Editors): Eurographics Workshop on Visual Computing for Biology and Medicine, 71-80, https://doi.org/10.2312/VCBM.20221189
Further details:
Stalling, Detlev; Westerhoff, Malte; Hege, Hans-Christian (2005): Amira: A Highly Interactive System for Visual Data Analysis. In: Hansen, C.D., Johnson, C.R. (Eds.), Visualization Handbook. Butterworth-Heinemann, Burlington, 749-767, https://doi.org/10.1016/B978-012387582-2/50040-X
Project(s):
Funding:
German Research Foundation (DFG), grant/award no. Ba5042/6-1; Ti706/6-1; project 490665120: CTcoral – CyberTaxonomische Klassifizierung und morphologische Charakterisierung von Kaltwasserkorallen
Coverage:
Latitude: 63.600000 * Longitude: 10.533333
Minimum Elevation: -90.0 m * Maximum Elevation: -90.0 m
Event(s):
Parameter(s):
| # | Name | Short Name | Unit | Principal Investigator | Method/Device | Comment |
|---|---|---|---|---|---|---|
| 1 | Binary Object | Binary | Titschack, Jürgen | |||
| 2 | Binary Object (Media Type) | Binary (Type) | Titschack, Jürgen | |||
| 3 | Binary Object (File Size) | Binary (Size) | Bytes | Titschack, Jürgen |
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
2 data points