Titschack, Jürgen; Schmitt, Benedikt; Baum, Daniel; Sanna, Giovanni; Freiwald, André; Timann, Christian; Lemke, Arne-Jörn (2022): CT raw data and polyp-cavity segmentation (both DICOM format) of coral colony fragment SaM-ID43148 (GeoB11207) [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.947300
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Abstract:
Sample SaM-ID43148 was retrieved during Meteor cruise M70-1 with the ROV MARUM-Quest from the Gondola Slide, southeast of the Gargano Promontory in the Adriatic Sea (Station M70/1-752, GeoB11207, 41°43.51'N, 17°02.78'E, 710 m water depth). The specimen was scanned with a Philips Brilliance iCT Elite 256 computer tomograph (x-ray source, voltage: 120 kV; current: 300 mA; physical resolution: 0.313 in xy-direction, respectively, 0.625 mm in z-direction; re-construction interval in z-direction: 0.3 mm; reconstruction: filtered Back Projection (fBP) mode and a bone kernel (YB (Enhanced)). Polyp-cavity (calice) segmentation was perfromed with the ZIB edition of the Amira software (Stalling et al., 2005; http://amira.zib.de) based on the new method describes in Schmitt et al. (submitted).
Keyword(s):
Related to:
Schmitt, Benedikt; Titschack, Jürgen; Baum, Daniel (2022): Polyp-Cavity Segmentation of Cold-Water Corals guided by Ambient Occlusion and Ambient Curvature. T. W. Kuhlen, R. G. Raidou, and B. Sommer (Editors): Eurographics Workshop on Visual Computing for Biology and Medicine, https://doi.org/10.2312/vcbm.20221189
Further details:
Freiwald, André; Boetius, Antje; Bohrmann, Gerhard (2011): Deep water ecosystems of the Eastern Mediterranean - Cruise No. M70 - September 24-December 8, 2006 - La Valletta (Malta)-Heraklion (Greece). METEOR-Berichte, DFG-Senatskommission für Ozeanographie, 146 pp, https://doi.org/10.2312/cr_m70
Stalling, Detlev; Westerhoff, Malte; Hege, Hans-Christian (2005): Amira: A Highly Interactive System for Visual Data Analysis. In: Hansen, C.D., Johnson, C.R. (Eds.), Visualization Handbook. Butterworth-Heinemann, Burlington, 749-767, https://doi.org/10.1016/B978-012387582-2/50040-X
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Coverage:
Median Latitude: 41.722420 * Median Longitude: 17.053580 * South-bound Latitude: 41.719670 * West-bound Longitude: 17.046330 * North-bound Latitude: 41.725170 * East-bound Longitude: 17.060830
Date/Time Start: 2006-10-15T07:11:00 * Date/Time End: 2006-10-15T07:11:00
Minimum Elevation: -710.0 m * Maximum Elevation: -674.0 m
Event(s):
M70/1_752 (GS: M70/1-752 (D 111)) * Latitude Start: 41.725170 * Longitude Start: 17.046330 * Latitude End: 41.719670 * Longitude End: 17.060830 * Date/Time: 2006-10-15T07:11:00 * Elevation Start: -674.0 m * Elevation End: -710.0 m * Location: Mediterranean Sea * Campaign: M70/1 * Basis: Meteor (1986) * Method/Device: Remote operated vehicle (ROV) * Comment: GeoB11207
Parameter(s):
| # | Name | Short Name | Unit | Principal Investigator | Method/Device | Comment |
|---|---|---|---|---|---|---|
| 1 | Binary Object | Binary | Titschack, Jürgen | |||
| 2 | Binary Object (Media Type) | Binary (Type) | Titschack, Jürgen | |||
| 3 | Binary Object (File Size) | Binary (Size) | Bytes | Titschack, Jürgen |
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
2 data points