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Véquaud, Pierre; Thibault, Alexandre; Derenne, Sylvie; Anquetil, Christelle; Collin, Sylvie; Contreras, Sergio; Nottingham, Andrew T; Sabatier, Pierre; Werne, Josef P; Huguet, Arnaud (2022): MAAT, MAP and pH in soils and peats [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.947062

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Published: 2022-08-15DOI registered: 2022-10-11

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Abstract:
Branched glycerol dialkyl glycerol tetraethers (brGDGTs) are a family of bacterial lipids which have emerged over time as robust temperature and pH paleoproxies in continental settings. Despite improvements in brGDGT analytical methods and development of refined models, the root-mean-square error (RMSE) associated with global calibrations between brGDGT distribution and MAAT in soils and peats remains high (~ 5 °C). Here we proposed to extend the global brGDGT terrestrial dataset previously proposed (n = 663; Dearing Crampton-Flood et al., 2019) with 112 soil samples from 6 altitudinal transects located in France (n = 49), Italy (n = 24), Tibet (n = 17), Chile (n = 8) and Peru (n =14). The transects were selected to take into account as much climatic and environmental variability as possible. All of these surficial soil samples (0 -10 cm depth) cover a wide range of temperatures (0°C to 26°C) and pH (3 to 8) and are representative of a wide diversity of environmental variables, vegetation and soil type. These new data were combined with previously published ones. This allowed the development of a new global terrestrial brGDGT temperature calibration from a worldwide extended dataset (i.e. 775 soil and peat samples) using a machine learning algorithm. This new model, called random Forest Regression for PaleOMAAT using brGDGTs (FROG), represents a refined brGDGT temperature calibration (R² = 0.8; RMSE = 4.01°C) for soils and peats, more robust and accurate than previous global soil calibrations while being proposed on an extended dataset.
Keyword(s):
branched GDGT; Branched GDGTs; GDGT; GDGTs; global temperature calibration; MAAT; machine learning; peat; Soil
Related to:
Bonanomi, Giuliano; Zotti, Maurizio; Mogavero, Valentina; Cesarano, Gaspare; Saulino, Luigi; Rita, Angelo; Tesei, Giulio; Allegrezza, Marina; Saracino, Antonio; Allevato, Emilia (2020): Climatic and anthropogenic factors explain the variability of Fagus sylvatica treeline elevation in fifteen mountain groups across the Apennines. Forest Ecosystems, 7(1), 5, https://doi.org/10.1186/s40663-020-0217-8
Dearing Crampton-Flood, Emily; Tierney, Jessica E; Peterse, Francien; Kirkels, Frédérique M S A; Sinninghe Damsté, Jaap S (2020): BayMBT: A Bayesian calibration model for branched glycerol dialkyl glycerol tetraethers in soils and peats. Geochimica et Cosmochimica Acta, 268, 142-159, https://doi.org/10.1016/j.gca.2019.09.043
Huguet, Arnaud; Coffinet, Sarah; Roussel, Anthony; Gayraud, Félix; Anquetil, Christelle; Bergonzini, Laurent; Bonanomi, Giuliano; Williamson, David; Majule, Amos; Derenne, Sylvie (2019): Evaluation of 3-hydroxy fatty acids as a pH and temperature proxy in soils from temperate and tropical altitudinal gradients. Organic Geochemistry, 129, 1-13, https://doi.org/10.1016/j.orggeochem.2019.01.002
Véquaud, Pierre; Derenne, Sylvie; Anquetil, Christelle; Collin, Sylvie; Poulenard, Jérôme; Sabatier, Pierre; Huguet, Arnaud (2021): Influence of environmental parameters on the distribution of bacterial lipids in soils from the French Alps: Implications for paleo-reconstructions. Organic Geochemistry, 153, 104194, https://doi.org/10.1016/j.orggeochem.2021.104194 (Véquaud et al., 2021b)
Véquaud, Pierre; Derenne, Sylvie; Thibault, Alexandre; Anquetil, Christelle; Bonanomi, Giuliano; Collin, Sylvie; Contreras, Sergio; Nottingham, Andrew T; Sabatier, Pierre; Salinas, Norma; Scott, Wesley P; Werne, Josef P; Huguet, Arnaud (2021): Development of global temperature and pH calibrations based on bacterial 3-hydroxy fatty acids in soils. Biogeosciences, 18(12), 3937-3959, https://doi.org/10.5194/bg-18-3937-2021 (Véquaud et al., 2021a)
Véquaud, Pierre; Thibault, Alexandre; Derenne, Sylvie; Anquetil, Christelle; Collin, Sylvie; Contreras, Sergio; Nottingham, Andrew T; Sabatier, Pierre; Werne, Josef P; Huguet, Arnaud (2022): FROG: A global machine-learning temperature calibration for branched GDGTs in soils and peats. Geochimica et Cosmochimica Acta, 318, 468-494, https://doi.org/10.1016/j.gca.2021.12.007
Wang, Jun-Tao; Cao, Peng; Hu, Hang-Wei; Li, Jing; Han, Li-Li; Zhang, Li-Mei; Zheng, Yuan-Ming; He, Ji-Zheng (2015): Altitudinal Distribution Patterns of Soil Bacterial and Archaeal Communities Along Mt. Shegyla on the Tibetan Plateau. Microbial Ecology, 69(1), 135-145, https://doi.org/10.1007/s00248-014-0465-7
Wang, M; Zheng, Z; Zong, Yongqiang; Man, Meiling; Tian, L (2019): Distributions of soil branched glycerol dialkyl glycerol tetraethers from different climate regions of China. Scientific Reports, 9(1), https://doi.org/10.1038/s41598-019-39147-9
Whitaker, Jeanette; Ostle, Nicholas; Nottingham, Andrew T; Ccahuana, Adan; Salinas, Norma; Bardgett, Richard D; Meir, Patrick; McNamara, N P (2014): Microbial community composition explains soil respiration responses to changing carbon inputs along an A ndes-to- A mazon elevation gradient. Journal of Ecology, 102(4), 1058-1071, https://doi.org/10.1111/1365-2745.12247
Funding:
Sorbonne Université, Paris, France, grant/award no. EC2CO (CNRS/INSU – BIO- HEFECT/MICROBIEN): SHAPE
Sorbonne Université, Paris, France, grant/award no. ECOS SUD/ECOS ANID #C19U01/190011
Coverage:
Median Latitude: 29.083811 * Median Longitude: 33.972118 * South-bound Latitude: -38.708000 * West-bound Longitude: 5.866233 * North-bound Latitude: 45.681339 * East-bound Longitude: 94.416667
Date/Time Start: 2010-12-01T00:00:00 * Date/Time End: 2017-10-01T00:00:00
Minimum ELEVATION: m a.s.l. * Maximum ELEVATION: 4479 m a.s.l.
Event(s):
Chile  * Latitude: -38.500000 * Longitude: -71.500000 * Location: Chile * Method/Device: Multiple investigations (MULT)
France  * Latitude: 46.000000 * Longitude: 2.000000 * Method/Device: Multiple investigations (MULT)
Italy  * Latitude: 43.000000 * Longitude: 12.000000 * Location: Italy * Method/Device: Multiple investigations (MULT)
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
Event labelEventVéquaud, Pierre
Sample IDSample IDVéquaud, Pierre
Reference/sourceReferenceVéquaud, Pierre
Sample typeSamp typeVéquaud, Pierre
Area/localityAreaVéquaud, Pierre
ELEVATIONElevationm a.s.l.Véquaud, PierreGeocode
LATITUDELatitudeVéquaud, PierreGeocode
Latitude 2Latitude 2Véquaud, Pierre
LONGITUDELongitudeVéquaud, PierreGeocode
10 Longitude 2Longitude 2Véquaud, Pierre
11 DATE/TIMEDate/TimeVéquaud, PierreGeocode
12 Temperature, air, annual meanMAAT°CVéquaud, Pierre
13 Precipitation, annual total, meanPrecip annual tot meanmm/aVéquaud, Pierre
14 pHpHVéquaud, Pierre
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
725 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Event

Sample ID

Reference

Samp type

Area

Elevation [m a.s.l.]

Latitude

Latitude 2

Longitude
10 
Longitude 2
11 
Date/Time
12 
MAAT [°C]
13 
Precip annual tot mean [mm/a]
14 
pH
Peru TAM4Véquaud et al., 2021a ; Whitaker et al., 2014SoilPeru194-12.83900069.2960002010-1226.4027303.70
PeruTAM3Véquaud et al., 2021a ; Whitaker et al., 2014SoilPeru210-12.83000069.2710002010-1226.4031994.00
PeruVCVéquaud et al., 2021a ; Whitaker et al., 2014SoilPeru1063-12.86600069.4010002010-1220.7030874.70
PeruSP2Véquaud et al., 2021a ; Whitaker et al., 2014SoilPeru1500-13.04900071.5370002010-1217.4026313.50
PeruSP1Véquaud et al., 2021a ; Whitaker et al., 2014SoilPeru1750-13.04700071.5430002010-1215.8026313.60
PeruTU8Véquaud et al., 2021a ; Whitaker et al., 2014SoilPeru1850-13.07100071.5550002010-1216.0024723.50
PeruTU7Véquaud et al., 2021a ; Whitaker et al., 2014SoilPeru2020-13.07400071.5590002010-1214.9018273.40
PeruTU5Véquaud et al., 2021a ; Whitaker et al., 2014SoilPeru2520-13.09400071.5740002010-1212.103.70
PeruTU4Véquaud et al., 2021a ; Whitaker et al., 2014SoilPeru2720-13.10700071.5890002010-1211.1023183.60
PeruTU3Véquaud et al., 2021a ; Whitaker et al., 2014SoilPeru3020-13.10900071.6000002010-129.5017763.40
PeruTU2Véquaud et al., 2021a ; Whitaker et al., 2014SoilPeru3200-13.11100071.6040002010-128.903.50
PeruWAYVéquaud et al., 2021a ; Whitaker et al., 2014SoilPeru3025-13.19000071.5870002010-1211.1017063.50
PeruTU1Véquaud et al., 2021a ; Whitaker et al., 2014SoilPeru3400-13.11100071.6040002010-127.7025553.40
PeruTCVéquaud et al., 2021a ; Whitaker et al., 2014SoilPeru36442010-126.503.40
Tibet T1Véquaud et al., 2021a ; Wang et al., 2015SoilTibet310629.58333329.9594.41666794.752011-078.945.53
TibetT2Véquaud et al., 2021a ; Wang et al., 2015SoilTibet311729.58333329.9594.41666794.752011-078.886.43
TibetT3Véquaud et al., 2021a ; Wang et al., 2015SoilTibet313229.58333329.9594.41666794.752011-078.796.01
TibetT4Véquaud et al., 2021a ; Wang et al., 2015SoilTibet334429.58333329.9594.41666794.752011-077.596.03
TibetT5Véquaud et al., 2021a ; Wang et al., 2015SoilTibet335529.58333329.9594.41666794.752011-077.525.87
TibetT6Véquaud et al., 2021a ; Wang et al., 2015SoilTibet335629.58333329.9594.41666794.752011-077.525.52
TibetC1Véquaud et al., 2021a ; Wang et al., 2015SoilTibet403029.58333329.9594.41666794.752011-073.685.21
TibetC2Véquaud et al., 2021a ; Wang et al., 2015SoilTibet404629.58333329.9594.41666794.752011-073.584.68
TibetC3Véquaud et al., 2021a ; Wang et al., 2015SoilTibet405029.58333329.9594.41666794.752011-073.564.61
TibetC4Véquaud et al., 2021a ; Wang et al., 2015SoilTibet391229.58333329.9594.41666794.752011-074.355.04
TibetC5Véquaud et al., 2021a ; Wang et al., 2015SoilTibet391829.58333329.9594.41666794.752011-074.314.68
TibetC6Véquaud et al., 2021a ; Wang et al., 2015SoilTibet429829.58333329.9594.41666794.752011-072.155.04
TibetC7Véquaud et al., 2021a ; Wang et al., 2015SoilTibet429529.58333329.9594.41666794.752011-072.164.87
TibetC8Véquaud et al., 2021a ; Wang et al., 2015SoilTibet430429.58333329.9594.41666794.752011-072.115.26
TibetF1Véquaud et al., 2021a ; Wang et al., 2015SoilTibet447929.58333329.9594.41666794.752011-071.125.26
TibetF2Véquaud et al., 2021a ; Wang et al., 2015SoilTibet447929.58333329.9594.41666794.752011-071.125.07
TibetF3Véquaud et al., 2021a ; Wang et al., 2015SoilTibet447429.58333329.9594.41666794.752011-071.145.24
Italy 0mVéquaud et al., 2021a ; Bonanomi et al., 2020SoilItaly039.90670316.1891582016-1218.006.78
Italy200mVéquaud et al., 2021a ; Bonanomi et al., 2020SoilItaly20039.90670316.1891582016-1217.006.19
Italy400mVéquaud et al., 2021a ; Bonanomi et al., 2020SoilItaly40039.90670316.1891582016-1216.006.13
Italy600mVéquaud et al., 2021a ; Bonanomi et al., 2020SoilItaly60039.90670316.1891582016-1215.006.14
Italy800mVéquaud et al., 2021a ; Bonanomi et al., 2020SoilItaly80039.90670316.1891582016-1214.004.53
Italy1000mVéquaud et al., 2021a ; Bonanomi et al., 2020SoilItaly100039.90670316.1891582016-1213.005.41
Italy1200mVéquaud et al., 2021a ; Bonanomi et al., 2020SoilItaly120039.90670316.1891582016-1212.006.37
Italy1400mVéquaud et al., 2021a ; Bonanomi et al., 2020SoilItaly140039.90670316.1891582016-1211.005.62
Italy1600mVéquaud et al., 2021a ; Bonanomi et al., 2020SoilItaly160039.90670316.1891582016-1210.004.93
Italy1800mVéquaud et al., 2021a ; Bonanomi et al., 2020SoilItaly180039.90670316.1891582016-129.004.91
Italy2000mVéquaud et al., 2021a ; Bonanomi et al., 2020SoilItaly200039.90670316.1891582016-128.005.52
Italy2100mVéquaud et al., 2021a ; Bonanomi et al., 2020SoilItaly210039.90670316.1891582016-127.505.91
Italy2200mVéquaud et al., 2021a ; Bonanomi et al., 2020SoilItaly220039.90670316.1891582016-127.005.85
ItalyAH-29Huguet et al., 2019; Véquaud et al., 2021aSoilItaly40042.08690014.2006702016-1214.108.10
ItalyAH-30Huguet et al., 2019; Véquaud et al., 2021aSoilItaly80042.08391014.1762602016-1211.808.70
ItalyAH-31Huguet et al., 2019; Véquaud et al., 2021aSoilItaly100042.07850014.1676202016-1210.607.70
ItalyAH-32Huguet et al., 2019; Véquaud et al., 2021aSoilItaly120042.07572014.1628002016-129.507.70
ItalyAH-33Huguet et al., 2019; Véquaud et al., 2021aSoilItaly140042.07427014.1548802016-128.307.60
ItalyAH-34Huguet et al., 2019; Véquaud et al., 2021aSoilItaly160042.07617014.1421602016-127.207.10
ItalyAH-35Huguet et al., 2019; Véquaud et al., 2021aSoilItaly180042.07965014.1343302016-126.008.00
ItalyAH-36Huguet et al., 2019; Véquaud et al., 2021aSoilItaly200042.08598014.1259702016-124.808.10
ItalyAH-37Huguet et al., 2019; Véquaud et al., 2021aSoilItaly240042.09066014.0967202016-122.507.50
ItalyAH-38Huguet et al., 2019; Véquaud et al., 2021aSoilItaly260042.08882014.0888102016-121.408.00
ItalyAH-39Huguet et al., 2019; Véquaud et al., 2021aSoilItaly280042.08780014.0867002016-120.207.90
France LAU2700Véquaud et al., 2021bSoilFrance270045.0597896.3919332017-100.375.08
FranceKS46Véquaud et al., 2021bSoilFrance264645.0597896.3919332017-100.636.30
FranceKS47Véquaud et al., 2021bSoilFrance274845.0600116.3650062017-100.135.98
FranceKS48Véquaud et al., 2021bSoilFrance269545.0591616.3679532017-100.396.45
FranceLAU 2470 Ð PA129Véquaud et al., 2021bSoilFrance247045.0543006.4008642017-101.504.68
FrancePA125Véquaud et al., 2021bSoilFrance263245.0581086.3730172017-100.704.89
FrancePA126Véquaud et al., 2021bSoilFrance268845.0593816.3691862017-100.434.85
FranceCF31Véquaud et al., 2021bSoilFrance250345.0501196.3850422017-101.334.80
FranceCF32Véquaud et al., 2021bSoilFrance257145.0543756.3750422017-101.004.50
FranceCF33Véquaud et al., 2021bSoilFrance253145.0537006.3781972017-101.204.84
FranceEN51Véquaud et al., 2021bSoilFrance250445.0486676.3872282017-101.335.65
FranceEN52Véquaud et al., 2021bSoilFrance253345.0505536.3819112017-101.195.91
FranceEN53Véquaud et al., 2021bSoilFrance255845.0529616.3777502017-101.067.14
FranceV26Véquaud et al., 2021bSoilFrance223045.0441506.4022782017-102.674.74
FranceV27Véquaud et al., 2021bSoilFrance230545.0482756.3960582017-102.305.08
FranceV28Véquaud et al., 2021bSoilFrance233345.0498116.3923692017-102.175.50
FranceLAU 2100Véquaud et al., 2021bSoilFrance210045.0450316.4071472017-103.314.80
FranceLAU1920Véquaud et al., 2021bSoilFrance192045.0405696.4190312017-104.195.23
FranceFP88Véquaud et al., 2021bSoilFrance204145.0403676.4084422017-103.605.20
FranceLD113Véquaud et al., 2021bSoilFrance194045.0395426.4352032017-104.096.15
FranceLD1820Véquaud et al., 2021bSoilFrance182045.0259286.4523972017-104.687.34
FranceLD1620Véquaud et al., 2021bSoilFrance162044.9965586.4806672017-105.666.34
FranceLECAS1620Véquaud et al., 2021bSoilFrance162045.0137616.4667892017-105.666.22
FranceLECAS1580Véquaud et al., 2021bSoilFrance158045.0013286.4742612017-105.866.58
FranceLECAS1540Véquaud et al., 2021bSoilFrance154044.9943116.4786942017-106.056.69
FranceFEC21Véquaud et al., 2021bSoilFrance147545.6673535.9714082017-107.504.68
FranceFEC22Véquaud et al., 2021bSoilFrance145045.6708225.9737192017-106.495.95
FranceFEC23Véquaud et al., 2021bSoilFrance136045.6748925.9981862017-107.445.06
FranceFEC31OVéquaud et al., 2021bSoilFrance137545.6755445.9961672017-106.014.90
FranceFEC32OVéquaud et al., 2021bSoilFrance136745.6759195.9976442017-106.904.80
FranceFEC33OV©quaud et al., 2021bSoilFrance136245.6743815.9966312017-107.705.15
FranceFEC31BVéquaud et al., 2021bSoilFrance137545.6755445.9961672017-106.864.80
FranceFEC32BVéquaud et al., 2021bSoilFrance136745.6759195.9976442017-106.904.87
FranceFEC33BVéquaud et al., 2021bSoilFrance136245.6743815.9966312017-106.925.48
FranceFEC11Véquaud et al., 2021bSoilFrance128645.6389645.9933442017-107.303.82
FranceFEC12Véquaud et al., 2021bSoilFrance131445.6454815.9906722017-107.393.62
FranceFEC13Véquaud et al., 2021bSoilFrance132145.6465865.9900252017-107.135.47
FranceMOU31Véquaud et al., 2021bSoilFrance90545.6728115.9621312017-109.166.41
FranceMOU32Véquaud et al., 2021bSoilFrance93845.6715815.9624502017-108.607.20
FranceMOU33Véquaud et al., 2021bSoilFrance101745.6684615.9614502017-107.936.70
FranceMOU11Véquaud et al., 2021bSoilFrance46245.6800195.9417502017-1011.987.46
FranceMOU12Véquaud et al., 2021bSoilFrance56545.6797895.9505312017-1010.836.70
FranceMOU13Véquaud et al., 2021bSoilFrance52045.6813395.9480192017-1011.257.10
FranceBOU11Véquaud et al., 2021bSoilFrance23245.6483035.8677332017-1012.497.30
FranceBOU12Véquaud et al., 2021bSoilFrance23445.6476225.8677362017-1012.457.49
FranceBOU13Véquaud et al., 2021bSoilFrance23745.6360835.8693282017-1012.447.33
FranceBOU21Véquaud et al., 2021bSoilFrance23245.6483565.8662332017-1012.737.25
FranceBOU22Véquaud et al., 2021bSoilFrance23245.6499645.8666692017-1012.467.49
FranceBOU23Véquaud et al., 2021aSoilFrance23445.6395035.8701472017-1012.457.64
Chile Laguna NegraVéquaud et al., 2021aSoilChile690-38.58534571.8110009.2123755.38
ChileQuepeVéquaud et al., 2021aSoilChile870-38.64800071.8700008.8622825.62
ChileMallecoVéquaud et al., 2021aSoilChile891-38.21600071.8210007.9428814.94
ChileVerde conguillioVéquaud et al., 2021aSoilChile980-38.68400071.6100008.4623355.63
ChileCaptrenVéquaud et al., 2021aSoilChile985-38.63900071.7030005.7526444.67
ChileConguillioVéquaud et al., 2021aSoilChile1125-38.63100071.6560006.0324805.00
ChileGalletueVéquaud et al., 2021aSoilChile1151-38.68000071.2940006.0421335.89
ChileEl ToroVéquaud et al., 2021aSoilChile1196-38.70800071.3500007.1119705.79