Not logged in
PANGAEA.
Data Publisher for Earth & Environmental Science

Martins, Catarina P P; Arnold, Angelina L; Kömpf, Katharina; Schubert, Patrick; Ziegler, Maren; Wilke, Thomas; Reichert, Jessica (2022): Seawater carbonate chemistry and physiological parameters of Acropora humilis, Acropora millepora, Pocillopora damicornis, Pocillopora verrucosa, Porites cylindrica, and Porites lutea [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.946411

Always quote citation above when using data! You can download the citation in several formats below.

RIS CitationBibTeX Citation

Abstract:
Ocean acidification (OA) poses a major threat to calcifying organisms such as reef-building corals, typically leading to reduced calcification rates. Mechanisms to compensate the effects of OA on coral growth may, however, involve processes other than calcification. Yet, the physiological patterns mediating coral growth under OA are not fully understood, despite an extensive body of literature characterizing physiological changes in corals under OA. Therefore, we conducted a three-month laboratory experiment with six scleractinian coral species (Acropora humilis, Acropora millepora, Pocillopora damicornis, Pocillopora verrucosa, Porites cylindrica, and Porites lutea) to assess physiological parameters that potentially characterize growth (calcification, volume, and surface area), maintenance (tissue biomass, and lipid and protein content), and cellular stress (apoptotic activity) response under ambient (pH 7.9) and low pH (pH 7.7). We identified genus- and species-specific physiological parameters potentially mediating the observed growth responses to low pH. We found no significant changes in calcification but species showed decreasing growth in volume and surface area, which occurred alongside changes in maintenance and cellular stress parameters that differed between genera and species. Acropora spp. showed elevated cellular stress and Pocillopora spp. showed changes in maintenance-associated parameters, while both genera largely maintained growth under low pH. Conversely, Porites spp. experienced the largest decreases in volume growth but showed no major changes in parameters related to maintenance or cellular stress. Our findings indicate that growth- and calcification-related responses alone may not fully reflect coral susceptibility to OA. They may also contribute to a better understanding of the complex physiological processes leading to differential growth changes of reef-building corals in response to low pH conditions.
Keyword(s):
Acropora humilis; Acropora millepora; Animalia; Benthic animals; Benthos; Calcification/Dissolution; Cnidaria; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Growth/Morphology; Laboratory experiment; Other studied parameter or process; Pocillopora damicornis; Pocillopora verrucosa; Porites cylindrica; Porites lutea; Respiration; Single species; South Pacific; Tropical
Supplement to:
Martins, Catarina P P; Arnold, Angelina L; Kömpf, Katharina; Schubert, Patrick; Ziegler, Maren; Wilke, Thomas; Reichert, Jessica (2022): Growth Response of Reef-Building Corals to Ocean Acidification Is Mediated by Interplay of Taxon-Specific Physiological Parameters. Frontiers in Marine Science, 9, https://doi.org/10.3389/fmars.2022.872631
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2021): seacarb: seawater carbonate chemistry with R. R package version 3.2.16. https://cran.r-project.org/web/packages/seacarb/index.html
Martins, Catarina P P (2022): Raw data for: Growth response of reef-building corals to ocean acidification is mediated by interplay of taxon-specific physiological parameters. figshare, https://doi.org/10.6084/m9.figshare.19107380
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2022-07-18.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
TypeTypeMartins, Catarina P PStudy
Species, unique identificationSpecies UIDMartins, Catarina P P
Species, unique identification (URI)Species UID (URI)Martins, Catarina P P
Species, unique identification (Semantic URI)Species UID (Semantic URI)Martins, Catarina P P
TreatmentTreatMartins, Catarina P P
Calcification rate of calcium carbonate per monthCalc rate CaCO3/monthmg/cm2/monthMartins, Catarina P P
Calcification rate, standard deviationCalc rate std dev±Martins, Catarina P P
Growth rate, volume per surface areaµmm3/mm2/monthMartins, Catarina P P
Growth rate, standard deviationµ std dev±Martins, Catarina P P
10 Growth rateµ%/monthMartins, Catarina P PSurface Area
11 Growth rate, standard deviationµ std dev±Martins, Catarina P PSurface Area
12 Tissue biomassTis biommg/gMartins, Catarina P P
13 Tissue biomass, standard deviationTis biom std dev±Martins, Catarina P P
14 Proteins, per ash free dry massProt/afdmmg/gMartins, Catarina P P
15 Proteins, standard deviationProtein std dev±Martins, Catarina P P
16 Lipids, per ash free dry massLipid/afdmmg/gMartins, Catarina P P
17 Lipids, standard deviationLipids std dev±Martins, Catarina P P
18 Apoptotic activity, per proteinApoptotic act/protRLU/µgMartins, Catarina P P
19 Apoptotic activity, per protein, standard deviationApoptotic act/prot std dev±Martins, Catarina P P
20 Temperature, waterTemp°CMartins, Catarina P P
21 Temperature, water, standard deviationTemp std dev±Martins, Catarina P P
22 ReplicatesRepl#Martins, Catarina P P
23 SalinitySalMartins, Catarina P P
24 Salinity, standard deviationSal std dev±Martins, Catarina P P
25 ReplicatesRepl#Martins, Catarina P P
26 pHpHMartins, Catarina P Ptotal scale
27 pH, standard deviationpH std dev±Martins, Catarina P Ptotal scale
28 ReplicatesRepl#Martins, Catarina P Ptotal scale
29 Alkalinity, totalATµmol/kgMartins, Catarina P P
30 Alkalinity, total, standard deviationAT std dev±Martins, Catarina P P
31 ReplicatesRepl#Martins, Catarina P P
32 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmMartins, Catarina P PCalculated using CO2SYS
33 Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Martins, Catarina P PCalculated using CO2SYS
34 ReplicatesRepl#Martins, Catarina P P
35 Aragonite saturation stateOmega ArgMartins, Catarina P PCalculated using CO2SYS
36 Aragonite saturation state, standard deviationOmega Arg std dev±Martins, Catarina P PCalculated using CO2SYS
37 ReplicatesRepl#Martins, Catarina P P
38 pHpHMartins, Catarina P PDaily Minimum, total scale
39 pH, standard deviationpH std dev±Martins, Catarina P PDaily Minimum, total scale
40 ReplicatesRepl#Martins, Catarina P PDaily Minimum, total scale
41 pHpHMartins, Catarina P PDaily Maximum, total scale
42 pH, standard deviationpH std dev±Martins, Catarina P PDaily Maximum, total scale
43 ReplicatesRepl#Martins, Catarina P PDaily Maximum, total scale
44 Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
45 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
46 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
47 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
48 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
49 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
50 Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
51 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
52 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
600 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Type
(Study)

Species UID

Species UID (URI)

Species UID (Semantic URI)

Treat

Calc rate CaCO3/month [mg/cm2/month]

Calc rate std dev [±]

µ [mm3/mm2/month]

µ std dev [±]
10 
µ [%/month]
(Surface Area)
11 
µ std dev [±]
(Surface Area)
12 
Tis biom [mg/g]
13 
Tis biom std dev [±]
14 
Prot/afdm [mg/g]
15 
Protein std dev [±]
16 
Lipid/afdm [mg/g]
17 
Lipids std dev [±]
18 
Apoptotic act/prot [RLU/µg]
19 
Apoptotic act/prot std dev [±]
20 
Temp [°C]
21 
Temp std dev [±]
22 
Repl [#]
23 
Sal
24 
Sal std dev [±]
25 
Repl [#]
26 
pH
(total scale)
27 
pH std dev [±]
(total scale)
28 
Repl [#]
(total scale)
29 
AT [µmol/kg]
30 
AT std dev [±]
31 
Repl [#]
32 
pCO2water_SST_wet [µatm]
(Calculated using CO2SYS)
33 
pCO2 std dev [±]
(Calculated using CO2SYS)
34 
Repl [#]
35 
Omega Arg
(Calculated using CO2SYS)
36 
Omega Arg std dev [±]
(Calculated using CO2SYS)
37 
Repl [#]
38 
pH
(Daily Minimum, total scale)
39 
pH std dev [±]
(Daily Minimum, total scale)
40 
Repl [#]
(Daily Minimum, total scale)
41 
pH
(Daily Maximum, total scale)
42 
pH std dev [±]
(Daily Maximum, total scale)
43 
Repl [#]
(Daily Maximum, total scale)
44 
CSC flag
(Calculated using seacarb afte...)
45 
CO2 [µmol/kg]
(Calculated using seacarb afte...)
46 
fCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
47 
pCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
48 
[HCO3]- [µmol/kg]
(Calculated using seacarb afte...)
49 
[CO3]2- [µmol/kg]
(Calculated using seacarb afte...)
50 
DIC [µmol/kg]
(Calculated using seacarb afte...)
51 
Omega Arg
(Calculated using seacarb afte...)
52 
Omega Cal
(Calculated using seacarb afte...)
laboratoryAcropora humilismarinespecies.orgurn:lsid:marinespecies.org:taxname:207094Ambient pH40350.120.1116.7811.3159.826.8146.7102.5169.5119.627618225.40.454333.50.647.920.184582172240165772464582.611.04587.660.04698.280.0969816.33573.99575.821746.34163.491926.152.633.99
laboratoryAcropora humilismarinespecies.orgurn:lsid:marinespecies.org:taxname:207094Low pH30250.050.0610.969.7246.326.7237.1226.3135.3119.641021825.20.654333.50.647.740.075432172240168711605431.790.45437.620.06697.810.0969824.73867.57870.351901.89112.052038.661.802.73
laboratoryAcropora milleporamarinespecies.orgurn:lsid:marinespecies.org:taxname:207023Ambient pH36180.030.125.5010.8243.415.4304.2127.8206.597.820613725.40.454333.50.647.920.184582172240165772464582.611.04587.660.04698.280.0969816.33573.99575.821746.34163.491926.152.633.99
laboratoryAcropora milleporamarinespecies.orgurn:lsid:marinespecies.org:taxname:207023Low pH3419-0.030.042.074.9740.69.3235.9111.0148.839.641515125.20.654333.50.647.740.075432172240168711605431.790.45437.620.06697.810.0969824.73867.57870.351901.89112.052038.661.802.73
laboratoryPocillopora damicornismarinespecies.orgurn:lsid:marinespecies.org:taxname:206953Ambient pH31180.130.1416.488.2643.114.2190.171.7203.256.026014025.40.454333.50.647.920.184582172240165772464582.611.04587.660.04698.280.0969816.33573.99575.821746.34163.491926.152.633.99
laboratoryPocillopora damicornismarinespecies.orgurn:lsid:marinespecies.org:taxname:206953Low pH2470.050.0510.854.4974.143.5229.3153.6126.185.422511225.20.654333.50.647.740.075432172240168711605431.790.45437.620.06697.810.0969824.73867.57870.351901.89112.052038.661.802.73
laboratoryPocillopora verrucosamarinespecies.orgurn:lsid:marinespecies.org:taxname:206954Ambient pH37120.100.1121.739.1133.17.2236.3102.7156.173.124316025.40.454333.50.647.920.184582172240165772464582.611.04587.660.04698.280.0969816.33573.99575.821746.34163.491926.152.633.99
laboratoryPocillopora verrucosamarinespecies.orgurn:lsid:marinespecies.org:taxname:206954Low pH24140.060.0810.166.2337.910.2153.387.3100.052.023519025.20.654333.50.647.740.075432172240168711605431.790.45437.620.06697.810.0969824.73867.57870.351901.89112.052038.661.802.73
laboratoryPorites cylindricamarinespecies.orgurn:lsid:marinespecies.org:taxname:207229Ambient pH33170.070.0814.719.5475.539.9155.999.9129.782.81025725.40.454333.50.647.920.184582172240165772464582.611.04587.660.04698.280.0969816.33573.99575.821746.34163.491926.152.633.99
laboratoryPorites cylindricamarinespecies.orgurn:lsid:marinespecies.org:taxname:207229Low pH2318-0.020.069.284.0954.811.4169.454.1138.116.4622725.20.654333.50.647.740.075432172240168711605431.790.45437.620.06697.810.0969824.73867.57870.351901.89112.052038.661.802.73
laboratoryPorites luteamarinespecies.orgurn:lsid:marinespecies.org:taxname:207246Ambient pH183980.250.1944.1519.4841.05.1227.593.9156.349.3762925.40.454333.50.647.920.184582172240165772464582.611.04587.660.04698.280.0969816.33573.99575.821746.34163.491926.152.633.99
laboratoryPorites luteamarinespecies.orgurn:lsid:marinespecies.org:taxname:207246Low pH148940.090.0734.1212.1365.217.8180.854.1141.753.2804425.20.654333.50.647.740.075432172240168711605431.790.45437.620.06697.810.0969824.73867.57870.351901.89112.052038.661.802.73