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Brennan, Reid S; deMayo, James A; Dam, Hans G; Finiguerra, Michael B; Baumann, Hannes; Pespeni, Melissa H (2022): Seawater carbonate chemistry and allele frequencygene, expression plasticity, genetic diversity and egg production rate of marine copepod [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.946063

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Abstract:
Adaptive evolution and phenotypic plasticity will fuel resilience in the geologically unprecedented warming and acidification of the earth's oceans, however, we have much to learn about the interactions and costs of these mechanisms of resilience. Here, using 20 generations of experimental evolution followed by three generations of reciprocal transplants, we investigated the relationship between adaptation and plasticity in the marine copepod, Acartia tonsa, in future global change conditions (high temperature and high CO2). We found parallel adaptation to global change conditions in genes related to stress response, gene expression regulation, actin regulation, developmental processes, and energy production. However, reciprocal transplantation showed that adaptation resulted in a loss of transcriptional plasticity, reduced fecundity, and reduced population growth when global change-adapted animals were returned to ambient conditions or reared in low food conditions. However, after three successive transplant generations, global change-adapted animals were able to match the ambient-adaptive transcriptional profile. Concurrent changes in allele frequencies and erosion of nucleotide diversity suggest that this recovery occurred via adaptation back to ancestral conditions. These results demonstrate that while plasticity facilitated initial survival in global change conditions, it eroded after 20 generations as populations adapted, limiting resilience to new stressors and previously benign environments.
Keyword(s):
Acartia tonsa; Animalia; Arthropoda; Bottles or small containers/Aquaria (<20 L); Coast and continental shelf; Development; Gene expression (incl. proteomics); Laboratory experiment; Mortality/Survival; North Atlantic; Other; Pelagos; Reproduction; Single species; Temperate; Temperature; Zooplankton
Supplement to:
Brennan, Reid S; deMayo, James A; Dam, Hans G; Finiguerra, Michael B; Baumann, Hannes; Pespeni, Melissa H (2022): Loss of transcriptional plasticity but sustained adaptive capacity after adaptation to global change conditions in a marine copepod. Nature Communications, 13(1), https://doi.org/10.1038/s41467-022-28742-6
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2021): seacarb: seawater carbonate chemistry with R. R package version 3.2.16. https://cran.r-project.org/web/packages/seacarb/index.html
Coverage:
Latitude: 41.320725 * Longitude: -72.001643
Date/Time Start: 2016-06-01T00:00:00 * Date/Time End: 2016-06-30T00:00:00
Event(s):
Esker_Point_Beach * Latitude: 41.320725 * Longitude: -72.001643 * Date/Time Start: 2016-06-01T00:00:00 * Date/Time End: 2016-06-30T00:00:00
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2022-07-07.
AM= ambient pH, OWA=future warming and acidification conditions
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1TypeTypeBrennan, Reid SStudy
2Species, unique identificationSpecies UIDBrennan, Reid S
3Species, unique identification (URI)Species UID (URI)Brennan, Reid S
4Species, unique identification (Semantic URI)Species UID (Semantic URI)Brennan, Reid S
5FigureFigBrennan, Reid S
6Principal component 1PC1ScoreBrennan, Reid S
7Principal component 2PC2ScoreBrennan, Reid S
8IdentificationIDBrennan, Reid S
9TreatmentTreatBrennan, Reid SLine
10TreatmentTreatBrennan, Reid Sreciprocal transplant
11GroupGroupBrennan, Reid S
12GroupGroupBrennan, Reid S
13GenerationGeneration#Brennan, Reid S
14CountsCounts#Brennan, Reid Sdifferentially expressed genes
15ScoreScoreBrennan, Reid Sdiscriminant function
16Nucleotide diversitypiBrennan, Reid S
17IdentificationIDBrennan, Reid SX
18Phytoplankton, biomass as carbonPhytopl Cµg/lBrennan, Reid SFood
19IdentificationIDBrennan, Reid SBin
20Eggs, hatchedEggs hatch#Brennan, Reid S1
21Eggs, hatchedEggs hatch#Brennan, Reid S2
22Eggs, hatchedEggs hatch#Brennan, Reid S3
23Eggs, unhatchedEggs unhatch#Brennan, Reid S1
24Eggs, unhatchedEggs unhatch#Brennan, Reid S2
25Eggs, unhatchedEggs unhatch#Brennan, Reid S3
26Egg production rate per femaleEPR#/female/dayBrennan, Reid S
27Hatching frequencyHatch freqBrennan, Reid S1
28Hatching frequencyHatch freqBrennan, Reid S2
29Hatching frequencyHatch freqBrennan, Reid S3
30Hatching frequencyHatch freqBrennan, Reid S
31ReplicateReplBrennan, Reid S
32IdentificationIDBrennan, Reid SBeak
33Time in daysTimedaysBrennan, Reid S
34SurvivalSurv#Brennan, Reid S
35Proportion of survivalSurvivalBrennan, Reid S
36Reproductive rateLambdaBrennan, Reid S
37Temperature, waterTemp°CBrennan, Reid S
38pHpHBrennan, Reid SNBS scale
39Alkalinity, totalATµmol/kgBrennan, Reid S
40SalinitySalBrennan, Reid S
41Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
42pHpHYang, YanCalculated using seacarb after Nisumaa et al. (2010)total scale
43Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
44Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
45Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
46Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
47Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
48Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
49Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
50Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
30685 data points

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