Citation:

PANGAEA.945928

Name: Seawater carbonate chemistry and survival and development of European eel embryos
Published: 2022-07-05
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Anguilla anguilla; Animalia; Bottles or small containers/Aquaria (<20 L); Chordata; Coast and continental shelf; Development; Gene expression (incl. proteomics); Laboratory experiment; Mortality/Survival; Nekton; North Atlantic; Pelagos; Reproduction; Single species; Temperate

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Keyword(s):

Anguilla anguilla; Animalia; Bottles or small containers/Aquaria (<20 L); Chordata; Coast and continental shelf; Development; Gene expression (incl. proteomics); Laboratory experiment; Mortality/Survival; Nekton; North Atlantic; Pelagos; Reproduction; Single species; Temperate

Supplement to:

Sganga, Daniela E; Dahlke, Flemming; Sørensen, Sune R; Butts, Ian A E; Tomkiewicz, Jonna; Mazurais, David; Servili, Arianna; Politis, Sebastian N (2022): CO2 induced seawater acidification impacts survival and development of European eel embryos. PLoS ONE, 17(4), e0267228, https://doi.org/10.1371/journal.pone.0267228

Further details:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2021): seacarb: seawater carbonate chemistry with R. R package version 3.2.16. https://cran.r-project.org/web/packages/seacarb/index.html

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Comment:

In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2022-06-29.

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Type	Type		Sganga, Daniela E		Study
2	Species, unique identification	Species UID		Sganga, Daniela E
3	Species, unique identification (URI)	Species UID (URI)		Sganga, Daniela E
4	Species, unique identification (Semantic URI)	Species UID (Semantic URI)		Sganga, Daniela E
5	Identification	ID		Sganga, Daniela E		Parental cross
6	Treatment	Treat		Sganga, Daniela E
7	Time in hours	Time	h	Sganga, Daniela E		post-fertilization
8	Survival	Survival	%	Sganga, Daniela E
9	Survival rate, standard deviation	Survival rate std dev	±	Sganga, Daniela E
10	Irregular cleavages	Irregular cleavages	%	Sganga, Daniela E
11	Irregular cleavages, standard deviation	Irregular cleavages std dev	±	Sganga, Daniela E
12	Eggs, diameter	Eggs diam	mm	Sganga, Daniela E
13	Eggs, diameter, standard deviation	Eggs diam std dev	±	Sganga, Daniela E
14	Perivitelline space size	PV space size	mm²	Sganga, Daniela E
15	Perivitelline space size, standard deviation	PV space size std dev	±	Sganga, Daniela E
16	Gene expression	Gene expression		Sganga, Daniela E		aqp 1
17	Gene expression, standard deviation	Gene expression std dev	±	Sganga, Daniela E		aqp 1
18	Gene expression	Gene expression		Sganga, Daniela E		aqp3
19	Gene expression, standard deviation	Gene expression std dev	±	Sganga, Daniela E		aqp3
20	Gene expression	Gene expression		Sganga, Daniela E		hsp70
21	Gene expression, standard deviation	Gene expression std dev	±	Sganga, Daniela E		hsp70
22	Gene expression	Gene expression		Sganga, Daniela E		hsp90
23	Gene expression, standard deviation	Gene expression std dev	±	Sganga, Daniela E		hsp90
24	Gene expression	Gene expression		Sganga, Daniela E		crhr1
25	Gene expression, standard deviation	Gene expression std dev	±	Sganga, Daniela E		crhr1
26	Gene expression	Gene expression		Sganga, Daniela E		crfr2
27	Gene expression, standard deviation	Gene expression std dev	±	Sganga, Daniela E		crfr2
28	Gene expression	Gene expression		Sganga, Daniela E		nkcc1a
29	Gene expression, standard deviation	Gene expression std dev	±	Sganga, Daniela E		nkcc1a
30	Gene expression	Gene expression		Sganga, Daniela E		ncc
31	Gene expression, standard deviation	Gene expression std dev	±	Sganga, Daniela E		ncc
32	Gene expression	Gene expression		Sganga, Daniela E		car15
33	Gene expression, standard deviation	Gene expression std dev	±	Sganga, Daniela E		car15
34	Gene expression	Gene expression		Sganga, Daniela E		GABAAalpha6b
35	Gene expression, standard deviation	Gene expression std dev	±	Sganga, Daniela E		GABAAalpha6b
36	Gene expression	Gene expression		Sganga, Daniela E		gabra1
37	Gene expression, standard deviation	Gene expression std dev	±	Sganga, Daniela E		gabra1
38	Salinity	Sal		Sganga, Daniela E
39	Salinity, standard deviation	Sal std dev	±	Sganga, Daniela E
40	Temperature, water	Temp	°C	Sganga, Daniela E
41	Temperature, water, standard deviation	Temp std dev	±	Sganga, Daniela E
42	pH	pH		Sganga, Daniela E	Potentiometric	NBS scale
43	pH, standard deviation	pH std dev	±	Sganga, Daniela E	Potentiometric	NBS scale
44	pH	pH		Sganga, Daniela E	Calculated using seacarb	total scale
45	pH, standard deviation	pH std dev	±	Sganga, Daniela E	Calculated using seacarb	total scale
46	Alkalinity, total	AT	mg/kg	Sganga, Daniela E	Potentiometric titration
47	Alkalinity, total, standard deviation	AT std dev	±	Sganga, Daniela E	Potentiometric titration
48	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Sganga, Daniela E	Calculated using seacarb
49	Partial pressure of carbon dioxide, standard deviation	pCO2 std dev	±	Sganga, Daniela E	Calculated using seacarb
50	Bicarbonate ion	[HCO3]-	µmol/kg	Sganga, Daniela E	Calculated using seacarb
51	Bicarbonate ion, standard deviation	[HCO3]- std dev	±	Sganga, Daniela E	Calculated using seacarb
52	Carbonate ion	[CO3]2-	µmol/kg	Sganga, Daniela E	Calculated using seacarb
53	Carbonate ion, standard deviation	[CO3]2- std dev	±	Sganga, Daniela E	Calculated using seacarb
54	Carbon, inorganic, dissolved	DIC	µmol/kg	Sganga, Daniela E	Calculated using seacarb
55	Carbon, inorganic, dissolved, standard deviation	DIC std dev	±	Sganga, Daniela E	Calculated using seacarb
56	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
57	pH	pH		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	total scale
58	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
59	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
60	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
61	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
62	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
63	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
64	Alkalinity, total	AT	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
65	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
66	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

2908 data points

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