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Cryer, Sarah E; Schlosser, Christian; Allison, Nicola (2022): Seawater carbonate chemistry and calcification, photosynthesis and respiration of sub-colonies of a single tropical Stylophora pistillata colony [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.945523

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Abstract:
A decrease in ocean pH of 0.3 units will likely double the proportion of dissolved copper (Cu) present as the free metal ion, Cu2+, the most bioavailable form of Cu, and one of the most common marine pollutants. We assess the impact of ocean acidification and Cu, separately and in combination, on calcification, photosynthesis and respiration of sub-colonies of a single tropical Stylophora pistillata colony. After 15 days of treatment, total calcification rates were significantly decreased in corals exposed to high seawater pCO2 (∼1000-μatm, 2100 scenario) and at both ambient (1.6–1.9 nmols) and high (2.5–3.6 nmols) dissolved Cu concentrations compared to controls. The effect was increased when both stressors were combined. Coral respiration rates were significantly reduced by the combined stressors after 2 weeks of exposure, indicating the importance of experiment duration. It is therefore likely rising atmospheric CO2 will exacerbate the negative effects of Cu pollution to S. pistillata.
Keyword(s):
Animalia; Benthic animals; Benthos; Calcification/Dissolution; Cnidaria; Containers and aquaria (20-1000 L or < 1 m**2); Inorganic toxins; Laboratory experiment; Laboratory strains; Not applicable; Primary production/Photosynthesis; Respiration; Single species; Stylophora pistillata
Supplement to:
Cryer, Sarah E; Schlosser, Christian; Allison, Nicola (2022): The combined effects of ocean acidification and copper on the physiological responses of the tropical coral Stylophora pistillata. Marine Environmental Research, 176, 105610, https://doi.org/10.1016/j.marenvres.2022.105610
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2021): seacarb: seawater carbonate chemistry with R. R package version 3.2.16. https://cran.r-project.org/web/packages/seacarb/index.html
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2022-06-15.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
TypeTypeCryer, Sarah EStudy
Species, unique identificationSpecies UIDCryer, Sarah E
Species, unique identification (URI)Species UID (URI)Cryer, Sarah E
Species, unique identification (Semantic URI)Species UID (Semantic URI)Cryer, Sarah E
IdentificationIDCryer, Sarah ECoral
Day of experimentDOEdayCryer, Sarah E
Calcification rateCalc ratenmol/#/hCryer, Sarah ELight
Net photosynthesis rate, oxygen, per coral sub-colonyPN O2/colonyµmol/h/#Cryer, Sarah E
Gross photosynthesis rate, oxygen, per coral sub-colonyPG O2/colonyµmol/h/#Cryer, Sarah E
10 Net photosynthesis rate, oxygen, per coral sub-colonyPN O2/colonyµmol/day/#Cryer, Sarah E
11 Calcification rateCalc ratenmol/#/hCryer, Sarah EDark
12 Respiration rate, oxygen, per coral sub-colonyResp O2/colonyµmol/h/#Cryer, Sarah E
13 Calcification rate, per coral sub-colonyCalc rate/colonyµmol/day/#Cryer, Sarah ETotal Chamber
14 Respiration rate, oxygen, per coral sub-colonyResp O2/colonyµmol/day/#Cryer, Sarah E
15 TreatmentTreatCryer, Sarah E
16 Time in weeksTime weekweeksCryer, Sarah E
17 Calcification rate, per coral sub-colonyCalc rate/colonyµmol/day/#Cryer, Sarah E
18 Gross calcification rate, relativeGCR relCryer, Sarah ERelative
19 SalinitySalCryer, Sarah E
20 Carbon, inorganic, dissolvedDICµmol/kgCryer, Sarah E
21 Carbon, inorganic, dissolved, standard deviationDIC std dev±Cryer, Sarah E
22 ReplicatesRepl#Cryer, Sarah E
23 Alkalinity, totalATµmol/kgCryer, Sarah E
24 Alkalinity, total, standard deviationAT std dev±Cryer, Sarah E
25 ReplicatesRepl#Cryer, Sarah E
26 Temperature, waterTemp°CCryer, Sarah E
27 Temperature, water, standard deviationTemp std dev±Cryer, Sarah E
28 ReplicatesRepl#Cryer, Sarah E
29 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmCryer, Sarah EGas Stream
30 Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Cryer, Sarah EGas Stream
31 ReplicatesRepl#Cryer, Sarah E
32 CopperCunmol/lCryer, Sarah EDissolved
33 Copper, standard deviationCu std dev±Cryer, Sarah EDissolved
34 ReplicatesRepl#Cryer, Sarah E
35 Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
36 pHpHYang, YanCalculated using seacarb after Nisumaa et al. (2010)total scale
37 pH, standard deviationpH std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)total scale
38 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
39 Carbon dioxide, standard deviationCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
40 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
41 Fugacity of carbon dioxide in seawater, standard deviationfCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
42 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
43 Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
44 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
45 Bicarbonate ion, standard deviation[HCO3]- std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
46 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
47 Carbonate ion, standard deviation[CO3]2- std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
48 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
49 Aragonite saturation state, standard deviationOmega Arg std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
50 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
51 Calcite saturation state, standard deviationOmega Cal std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
1171 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Type
(Study)

Species UID

Species UID (URI)

Species UID (Semantic URI)

ID
(Coral)

DOE [day]

Calc rate [nmol/#/h]
(Light)

PN O2/colony [µmol/h/#]

PG O2/colony [µmol/h/#]
10 
PN O2/colony [µmol/day/#]
11 
Calc rate [nmol/#/h]
(Dark)
12 
Resp O2/colony [µmol/h/#]
13 
Calc rate/colony [µmol/day/#]
(Total Chamber)
14 
Resp O2/colony [µmol/day/#]
15 
Treat
16 
Time week [weeks]
17 
Calc rate/colony [µmol/day/#]
18 
GCR rel
(Relative)
19 
Sal
20 
DIC [µmol/kg]
21 
DIC std dev [±]
22 
Repl [#]
23 
AT [µmol/kg]
24 
AT std dev [±]
25 
Repl [#]
26 
Temp [°C]
27 
Temp std dev [±]
28 
Repl [#]
29 
pCO2water_SST_wet [µatm]
(Gas Stream)
30 
pCO2 std dev [±]
(Gas Stream)
31 
Repl [#]
32 
Cu [nmol/l]
(Dissolved)
33 
Cu std dev [±]
(Dissolved)
34 
Repl [#]
35 
CSC flag
(Calculated using seacarb afte...)
36 
pH
(total scale, Calculated using...)
37 
pH std dev [±]
(total scale, Calculated using...)
38 
CO2 [µmol/kg]
(Calculated using seacarb afte...)
39 
CO2 std dev [±]
(Calculated using seacarb afte...)
40 
fCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
41 
fCO2 std dev [±]
(Calculated using seacarb afte...)
42 
pCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
43 
pCO2 std dev [±]
(Calculated using seacarb afte...)
44 
[HCO3]- [µmol/kg]
(Calculated using seacarb afte...)
45 
[HCO3]- std dev [±]
(Calculated using seacarb afte...)
46 
[CO3]2- [µmol/kg]
(Calculated using seacarb afte...)
47 
[CO3]2- std dev [±]
(Calculated using seacarb afte...)
48 
Omega Arg
(Calculated using seacarb afte...)
49 
Omega Arg std dev [±]
(Calculated using seacarb afte...)
50 
Omega Cal
(Calculated using seacarb afte...)
51 
Omega Cal std dev [±]
(Calculated using seacarb afte...)
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:2069821-71090021.0627.83252.7263506.77207.00162.48High CO2
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:2069822-7715014.9819.98179.7629505.00121.20120.00High CO2
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:2069823-71240016.8524.01202.2088007.16254.40171.84High CO2
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:2069824-7595010.7214.94128.6424504.22100.80101.28High CO2
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:2069825-71450019.4526.83233.4091507.38283.80177.12High CO2 + High Cu
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:2069826-71100018.0324.18216.3654006.15196.80147.60High CO2 + High Cu
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:2069827-71775028.3836.56340.5681008.18310.20196.32High CO2 + High Cu
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:2069828-71015020.5025.80246.0047505.30178.80127.20High CO2 + High Cu
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:2069829-71300029.7836.08357.3686506.30259.80151.20High Cu
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:20698210-71595023.6029.32283.2069005.72274.20137.28High Cu
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:20698211-7635019.0024.10228.0038005.10121.80122.40High Cu
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:20698212-71910030.6040.40367.2087009.80333.60235.20High Cu
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:20698213-71060030.3038.18363.60105507.88253.80189.12Control
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:20698214-71450019.6725.12236.0474505.45263.40130.80Control
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:20698215-71135019.4525.29233.4063005.84211.80140.16Control
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:20698216-71750023.2732.35279.24120009.08354.00217.92Control
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:206982111325010.4815.63125.7659005.15229.80123.60High CO2
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:206982211220010.7515.71129.0070004.96230.40119.04High CO2
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:206982311770018.2225.12218.6489506.90319.80165.60High CO2
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:206982411185012.5118.61150.1261506.10216.00146.40High CO2
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:206982511711023.1030.15277.2075007.05295.32169.20High CO2 + High Cu
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:206982611163012.6518.92151.8058006.27209.16150.48High CO2 + High Cu
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:206982712885029.8736.49358.44111006.62479.40158.88High CO2 + High Cu
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:206982811325017.2522.02207.0054504.77224.40114.48High CO2 + High Cu
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:206982912200027.0834.38324.96118007.30405.60175.20High Cu
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:2069821011655021.5327.71258.3693006.18310.20148.32High Cu
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:2069821111260022.5025.70270.0093003.20262.8076.80High Cu
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:2069821212630032.7842.60393.36158009.82505.20235.68High Cu
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:2069821313470028.7036.00344.40174507.30625.80175.20Control
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:2069821411390016.4623.24197.5272006.78253.20162.72Control
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:2069821511630027.2535.05327.0082007.80294.00187.20Control
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:2069821612745033.0841.48396.96144008.40502.20201.60Control
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:206982181390016.6024.22199.2067507.62247.80182.88High CO2
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:206982281178013.0822.12156.9661009.04214.56216.96High CO2
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:206982382165021.8829.08262.56102007.20382.20172.80High CO2
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:206982481440016.3023.22195.6080006.92268.80166.08High CO2
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:206982582240021.2028.68254.4076007.48360.00179.52High CO2 + High Cu
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:206982682110016.4321.48197.1634005.05294.00121.20High CO2 + High Cu
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:206982783190026.3730.94316.4488504.57489.00109.68High CO2 + High Cu
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:206982881280012.3216.39147.84224004.07422.4097.68High CO2 + High Cu
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:206982982580028.1534.87337.80140006.72477.60161.28High Cu
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:2069821081628018.2225.92218.6476507.70287.16184.80High Cu
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:2069821182725030.5038.70366.00154008.20511.80196.80High Cu
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:2069821281750022.4527.35269.4093004.90321.60117.60High Cu
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:2069821382775024.7033.86296.40137509.16498.00219.84Control
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:2069821481265012.2818.98147.3683006.70251.40160.80Control
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:2069821581535019.3826.06232.5696306.68299.76160.32Control
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:2069821682095020.6229.72247.44152009.10433.80218.40Control
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:2069821151240012.0817.18144.9670505.10233.40122.40High CO2
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:2069822151085012.1017.10145.2066005.00209.40120.00High CO2
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:2069823152020015.2021.17182.40110505.97375.00143.28High CO2
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:2069824151410014.4519.70173.4061005.25242.40126.00High CO2
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:2069825151840016.3322.71195.9687006.38325.20153.12High CO2 + High Cu
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:206982615134008.8013.10105.6073004.30248.40103.20High CO2 + High Cu
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:2069827153130025.3532.67304.20146007.32550.80175.68High CO2 + High Cu
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:2069828151530012.5516.90150.6085504.35286.20104.40High CO2 + High Cu
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:2069829152690025.6033.90307.20181008.30540.00199.20High Cu
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:20698210151748012.1618.78145.92109006.62340.56158.88High Cu
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:20698211151815020.9326.95251.16130506.02374.40144.48High Cu
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:20698212152680018.1229.27217.441530011.15505.20267.60High Cu
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:20698213153400025.6836.00308.161885010.32634.20247.68Control
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:20698214151600013.8319.98165.9696506.15307.80147.60Control
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:20698215152060020.1027.23241.20128507.13401.40171.12Control
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:20698216152415018.3629.30220.321390010.94456.60262.56Control
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:206982High CO20683.41.000000000
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:206982High CO211108.81.62240269235205619219018.2925.80.515100815171.900.342157.710.0526.182.88940.82104.92943.81105.251921.098.31108.7310.851.730.192.620.29
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:206982High CO22895.41.31015092635201534219018.2925.80.515100815171.900.342157.800.0420.222.05726.4774.75728.7874.991862.4410.61132.3411.622.110.213.190.32
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:206982High CO2 + High Cu01083.01.00000000035
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:206982High CO2 + High Cu12551.02.35549399835203529218129.9725.80.314100815173.640.562157.740.0724.064.15864.43149.45867.17149.921895.7114.27115.2318.031.840.302.780.45
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:206982High CO2 + High Cu22647.72.444752231352005146218129.9725.80.314100815173.640.562157.810.0719.953.60716.97129.60719.25130.011852.3925.85132.6520.452.110.343.200.51
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:206982High Cu0989.41.00000000035
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:206982High Cu12079.52.10177885635192438221658.3925.80.3134016202.540.042158.030.0910.952.59393.5593.05394.8093.341707.6737.06205.3839.343.270.644.950.98
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:206982High Cu21445.41.46088538535190548221658.3925.80.3134016202.540.042158.070.099.982.28358.7282.12359.8682.381677.5737.86217.4539.653.460.655.240.99
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:206982Control0969.61.00000000035
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:206982Control11504.01.55115511635189129217912.6725.70.6124016201.630.092158.030.0210.780.65386.3024.92387.5325.001678.858.92201.388.923.210.214.850.31
laboratoryStylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:206982Control21049.91.08284712435189425217912.6725.70.6124016201.630.092158.030.0210.940.66392.1625.39393.4025.471683.578.90199.498.903.180.204.810.31