Marie, Dominique; Romac, Sarah (2022): Flow cytometry data of phytoplankton, bacteria and viruses obtained for samples collected during the Tara Pacific Expedition 2016-2018 [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.944490
Always quote citation above when using data! You can download the citation in several formats below.
Published: 2022-05-23 • DOI registered: 2022-07-02
Abstract:
The Tara Pacific expedition (2016-2018) sampled coral ecosystems around 32 islands in the Pacific Ocean, and sampled the surface of oceanic waters at 249 locations, resulting in the collection of nearly 58,000 samples. The expedition was designed to systematically study corals, fish, plankton, and seawater, and included the collection of samples for advanced biogeochemical, molecular, and imaging analysis. Here we provide flow cytometry data obtained for pico- and nano-phytoplankton, bacteria and viruses. Samples were fixed with Glutaraldehyde, kept onboard in liquid nitrogen and then stored at -80°C back in the laboratory. They were then analyzed unstained for phytoplankton using a FACS Canto II flow cytometer and stained using SYBR Green-I for bacteria and viruses.
Related to:
Lombard, Fabien; Bourdin, Guillaume; Pesant, Stephane; Agostini, Sylvain; Baudena, Alberto; Boissin, Emilie; Cassar, Nicolas; Clampitt, Megan; Conan, Pascal; Da Silva, Ophélie; Dimier, Céline; Douville, Eric; Elineau, A; Fin, Jonathan; Flores, J Michel; Ghiglione, Jean Francois; Hume, Benjamin C C; Jalabert, Laetitia; John, Seth G; Kelly, Rachel Lauren; Koren, Ilan; Lin, Yajuan; Marie, Dominique; McMinds, Ryan; Meriguet, Zoe; Metzl, Nicolas; Paz-Garcíax, David A; Pedrotti, Maria Luiza; Poulain, Julie; Pujo-Pay, Mireille; Ras, Josephine; Reverdin, Gilles; Romac, Sarah; Rouan, Alice; Röttinger, Eric; Vardi, Assaf; Voolstra, Christian R; Moulin, Clémentine; Iwankow, Guillaume; Banaigs, Bernard; Bowler, Chris; De Vargas, Colomban; Forcioli, Didier; Furla, Paola; Galand, Pierre E; Gilson, Eric; Reynaud, Stéphanie; Sunagawa, Shinichi; Sullivan, Matthew B; Thomas, Olivier; Troublé, Romain; Vega Thurber, Rebecca; Wincker, Patrick; Zoccola, Didier; Allemand, Denis; Planes, Serge; Boss, Emmanuel; Gorsky, G (2023): Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems. Scientific Data, 10(1), 324, https://doi.org/10.1038/s41597-022-01757-w
Marie, Dominique; Partensky, Frédéric; Vaulot, Daniel; Brussaard, Corina P D (1999): Enumeration of Phytoplankton, Bacteria, and Viruses in Marine Samples. Current Protocols in Cytometry, 10(1), https://doi.org/10.1002/0471142956.cy1111s10
Project(s):
Fondation Tara Expeditions (FondTara)
Tara Pacific Expedition (Tara_Pacific)
Coverage:
Median Latitude: 2.561144 * Median Longitude: -163.671746 * South-bound Latitude: -35.609350 * West-bound Longitude: 112.022083 * North-bound Latitude: 51.053467 * East-bound Longitude: -9.602950
Date/Time Start: 2016-05-30T13:15:00 * Date/Time End: 2018-10-19T10:54:00
Minimum DEPTH, water: 0.15 m * Maximum DEPTH, water: 17.00 m
Event(s):
TARA_20160530T1315Z_D_O-SRF_DOLPHIN-CARBOY (OA002-I00-S00) * Latitude Start: 45.403750 * Longitude Start: -9.602950 * Latitude End: 45.396167 * Longitude End: -9.619167 * Date/Time Start: 2016-05-30T13:15:00 * Date/Time End: 2016-05-30T13:24:00 * Location: Pacific * Campaign: TARA_PACIFIC_2016-2018 * Basis: SV Tara * Method/Device: DOLPHIN-CARBOY
TARA_20160531T1315Z_D_O-SRF_DOLPHIN-CARBOY (OA003-I00-S00) * Latitude Start: 43.881667 * Longitude Start: -12.435000 * Latitude End: 43.868317 * Longitude End: -12.472017 * Date/Time Start: 2016-05-31T13:15:00 * Date/Time End: 2016-05-31T13:34:00 * Location: Pacific * Campaign: TARA_PACIFIC_2016-2018 * Basis: SV Tara * Method/Device: DOLPHIN-CARBOY
TARA_20160601T0804Z_D_O-SRF_DOLPHIN-CARBOY (OA004-I00-S00) * Latitude Start: 42.721667 * Longitude Start: -14.806667 * Latitude End: 42.717000 * Longitude End: -14.815000 * Date/Time Start: 2016-06-01T08:04:00 * Date/Time End: 2016-06-01T08:08:00 * Location: Pacific * Campaign: TARA_PACIFIC_2016-2018 * Basis: SV Tara * Method/Device: DOLPHIN-CARBOY
Parameter(s):
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
37617 data points
Download Data
View dataset as HTML (shows only first 2000 rows)