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Xie, Emei; Xu, Kai; Li, Zhengke; Li, Wei; Yi, Xiangqi; Li, Hongzhou; Han, Yonghe; Zhang, Hong; Zhang, Yong (2021): Seawater carbonate chemistry and elemental contents and macromolecules of the coccolithophore Emiliania huxleyi [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.943450

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Abstract:
Elemental contents change with shifts in macromolecular composition of marine phytoplankton. Recent studies focus on the responses of elemental contents of coccolithophores, a major calcifying phytoplankton group, to changing carbonate chemistry, caused by the dissolution of anthropogenically derived CO2 into the surface ocean. However, the effects of changing carbonate chemistry on biomacromolecules, such as protein and carbohydrate of coccolithophores, are less documented. Here, we disentangled the effects of elevated dissolved inorganic carbon (DIC) concentration (900 to 4,930μmol/kg) and reduced pH value (8.04 to 7.70) on physiological rates, elemental contents, and macromolecules of the coccolithophore Emiliania huxleyi. Compared to present DIC concentration and pH value, combinations of high DIC concentration and low pH value (ocean acidification) significantly increased pigments content, particulate organic carbon (POC), and carbohydrate content and had less impact on growth rate, maximal relative electron transport rate (rETRmax), particulate organic nitrogen (PON), and protein content. In high pH treatments, elevated DIC concentration significantly increased growth rate, pigments content, rETRmax, POC, particulate inorganic carbon (PIC), protein, and carbohydrate contents. In low pH treatments, the extents of the increase in growth rate, pigments and carbohydrate content were reduced. Compared to high pH value, under low DIC concentration, low pH value significantly increased POC and PON contents and showed less impact on protein and carbohydrate contents; however, under high DIC concentration, low pH value significantly reduced POC, PON, protein, and carbohydrate contents. These results showed that reduced pH counteracted the positive effects of elevated DIC concentration on growth rate, rETRmax, POC, PON, carbohydrate, and protein contents. Elevated DIC concentration and reduced pH acted synergistically to increase the contribution of carbohydrate–carbon to POC, and antagonistically to affect the contribution of protein–nitrogen to PON, which further shifted the carbon/nitrogen ratio of E. huxleyi.
Keyword(s):
Biomass/Abundance/Elemental composition; Bottles or small containers/Aquaria (<20 L); Chromista; Emiliania huxleyi; Growth/Morphology; Haptophyta; Laboratory experiment; Laboratory strains; Not applicable; Other; Pelagos; Phytoplankton; Primary production/Photosynthesis; Single species
Supplement to:
Xie, Emei; Xu, Kai; Li, Zhengke; Li, Wei; Yi, Xiangqi; Li, Hongzhou; Han, Yonghe; Zhang, Hong; Zhang, Yong (2021): Disentangling the Effects of Ocean Carbonation and Acidification on Elemental Contents and Macromolecules of the Coccolithophore Emiliania huxleyi. Frontiers in Microbiology, 12, https://doi.org/10.3389/fmicb.2021.737454
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2021): seacarb: seawater carbonate chemistry with R. R package version 3.2.16. https://cran.r-project.org/web/packages/seacarb/index.html
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2022-04-22.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
TypeTypeZhang, Yongstudy
SpeciesSpeciesZhang, Yong
Registration number of speciesReg spec noZhang, YongWoRMS Aphia ID
Uniform resource locator/link to referenceURL refZhang, Yong
Experiment durationExp durationdaysZhang, Yong
TreatmentTreatZhang, Yong
Growth rateµ1/dayZhang, Yong
Growth rate, standard deviationµ std dev±Zhang, Yong
Chlorophyll a per cellChl a/cellpg/#Zhang, Yong
10 Chlorophyll a, standard deviationChl a std dev±Zhang, Yong
11 Carotenoids per cellCarotenoids/cellpg/#Zhang, Yong
12 Carotenoids, standard deviationCarotenoids std dev±Zhang, Yong
13 Carotenoids/Chlorophyll a ratioCarotenoids/Chl aZhang, Yong
14 Carotenoids/Chlorophyll a ratio, standard deviationCarotenoids/Chl a std dev±Zhang, Yong
15 Maximal electron transport rate, relativerETR maxZhang, Yong
16 Maximal electron transport rate, relative, standard deviationrETR max std dev±Zhang, Yong
17 Light use efficiencyalphaZhang, Yong
18 Light use efficiency, standard deviationalpha std dev±Zhang, Yong
19 Light saturation pointIkµmol/m2/sZhang, Yong
20 Light saturation point, standard deviationIk std dev±Zhang, Yong
21 Carbon, inorganic, particulate, per cellPIC/cellpg/#Zhang, Yong
22 Carbon, inorganic, particulate, standard deviationPIC std dev±Zhang, Yong
23 Carbon, organic, particulate, per cellPOC/cellpg/#Zhang, Yong
24 Carbon, organic, particulate, standard deviationPOC std dev±Zhang, Yong
25 Nitrogen, organic, particulate, per cellPON/cellpg/#Zhang, Yong
26 Nitrogen, organic, particulate, standard deviationPON std dev±Zhang, Yong
27 Particulate inorganic carbon/particulate organic carbon ratioPIC/POCZhang, Yong
28 Particulate inorganic carbon/particulate organic carbon ratio, standard deviationPIC/POC ratio std dev±Zhang, Yong
29 Carbon, organic, particulate/Nitrogen, organic, particulate ratioPOC/PONZhang, Yong
30 Carbon, organic, particulate/Nitrogen, organic, particulate ratio, standard deviationPOC/PON std dev±Zhang, Yong
31 Protein per cellProtein/cellpg/#Zhang, Yong
32 Proteins, standard deviationProtein std dev±Zhang, Yong
33 Carbohydrates, per cellCHO/cellpg/#Zhang, Yong
34 Carbohydrates, total, standard deviationCHO tot std dev±Zhang, Yong
35 Carbon, organic, particulatePOC%Zhang, YongAllocated to protein
36 Carbon, organic, particulate, standard deviationPOC std dev±Zhang, YongAllocated to protein
37 Carbon, organic, particulatePOC%Zhang, YongAllocated to carbohydrate
38 Carbon, organic, particulate, standard deviationPOC std dev±Zhang, YongAllocated to carbohydrate
39 Carbon, organic, particulatePOC%Zhang, YongAllocated to Chl a
40 Carbon, organic, particulate, standard deviationPOC std dev±Zhang, YongAllocated to Chl a
41 Carbon, organic, particulatePOC%Zhang, YongAllocated to carotenoid
42 Carbon, organic, particulate, standard deviationPOC std dev±Zhang, YongAllocated to carotenoid
43 Nitrogen, organic, particulatePON%Zhang, YongAllocated to protein
44 Nitrogen, organic, particulate, standard deviationPON std dev±Zhang, YongAllocated to protein
45 Nitrogen, organic, particulatePON%Zhang, YongAllocated to Chl a
46 Nitrogen, organic, particulate, standard deviationPON std dev±Zhang, YongAllocated to Chl a
47 SalinitySalZhang, Yong
48 Temperature, waterTemp°CZhang, Yong
49 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmZhang, YongCalculated using CO2SYS
50 Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Zhang, YongCalculated using CO2SYS
51 pHpHZhang, YongPotentiometrictotal scale
52 pH, standard deviationpH std dev±Zhang, YongPotentiometrictotal scale
53 Alkalinity, totalATµmol/kgZhang, YongPotentiometric titration
54 Alkalinity, total, standard deviationAT std dev±Zhang, YongPotentiometric titration
55 Carbon, inorganic, dissolvedDICµmol/kgZhang, YongCalculated using CO2SYS
56 Carbon, inorganic, dissolved, standard deviationDIC std dev±Zhang, YongCalculated using CO2SYS
57 Bicarbonate ion[HCO3]-µmol/kgZhang, YongCalculated using CO2SYS
58 Bicarbonate ion, standard deviation[HCO3]- std dev±Zhang, YongCalculated using CO2SYS
59 Carbonate ion[CO3]2-µmol/kgZhang, YongCalculated using CO2SYS
60 Carbonate ion, standard deviation[CO3]2- std dev±Zhang, YongCalculated using CO2SYS
61 Carbon dioxideCO2µmol/kgZhang, YongCalculated using CO2SYS
62 Carbon dioxide, standard deviationCO2 std dev±Zhang, YongCalculated using CO2SYS
63 Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
64 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
65 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
66 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
67 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
68 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
69 Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
70 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
71 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
284 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Type
(study)

Species

Reg spec no
(WoRMS Aphia ID)

URL ref

Exp duration [days]

Treat

µ [1/day]

µ std dev [±]

Chl a/cell [pg/#]
10 
Chl a std dev [±]
11 
Carotenoids/cell [pg/#]
12 
Carotenoids std dev [±]
13 
Carotenoids/Chl a
14 
Carotenoids/Chl a std dev [±]
15 
rETR max
16 
rETR max std dev [±]
17 
alpha
18 
alpha std dev [±]
19 
Ik [µmol/m2/s]
20 
Ik std dev [±]
21 
PIC/cell [pg/#]
22 
PIC std dev [±]
23 
POC/cell [pg/#]
24 
POC std dev [±]
25 
PON/cell [pg/#]
26 
PON std dev [±]
27 
PIC/POC
28 
PIC/POC ratio std dev [±]
29 
POC/PON
30 
POC/PON std dev [±]
31 
Protein/cell [pg/#]
32 
Protein std dev [±]
33 
CHO/cell [pg/#]
34 
CHO tot std dev [±]
35 
POC [%]
(Allocated to protein)
36 
POC std dev [±]
(Allocated to protein)
37 
POC [%]
(Allocated to carbohydrate)
38 
POC std dev [±]
(Allocated to carbohydrate)
39 
POC [%]
(Allocated to Chl a)
40 
POC std dev [±]
(Allocated to Chl a)
41 
POC [%]
(Allocated to carotenoid)
42 
POC std dev [±]
(Allocated to carotenoid)
43 
PON [%]
(Allocated to protein)
44 
PON std dev [±]
(Allocated to protein)
45 
PON [%]
(Allocated to Chl a)
46 
PON std dev [±]
(Allocated to Chl a)
47 
Sal
48 
Temp [°C]
49 
pCO2water_SST_wet [µatm]
(Calculated using CO2SYS)
50 
pCO2 std dev [±]
(Calculated using CO2SYS)
51 
pH
(total scale, Potentiometric)
52 
pH std dev [±]
(total scale, Potentiometric)
53 
AT [µmol/kg]
(Potentiometric titration)
54 
AT std dev [±]
(Potentiometric titration)
55 
DIC [µmol/kg]
(Calculated using CO2SYS)
56 
DIC std dev [±]
(Calculated using CO2SYS)
57 
[HCO3]- [µmol/kg]
(Calculated using CO2SYS)
58 
[HCO3]- std dev [±]
(Calculated using CO2SYS)
59 
[CO3]2- [µmol/kg]
(Calculated using CO2SYS)
60 
[CO3]2- std dev [±]
(Calculated using CO2SYS)
61 
CO2 [µmol/kg]
(Calculated using CO2SYS)
62 
CO2 std dev [±]
(Calculated using CO2SYS)
63 
CSC flag
(Calculated using seacarb afte...)
64 
CO2 [µmol/kg]
(Calculated using seacarb afte...)
65 
fCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
66 
pCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
67 
[HCO3]- [µmol/kg]
(Calculated using seacarb afte...)
68 
[CO3]2- [µmol/kg]
(Calculated using seacarb afte...)
69 
DIC [µmol/kg]
(Calculated using seacarb afte...)
70 
Omega Arg
(Calculated using seacarb afte...)
71 
Omega Cal
(Calculated using seacarb afte...)
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.org2Present DIC and pH1.330.010.110.010.080.020.730.03252.1410.840.580.030433.7813.684.170.2910.060.291.680.060.420.046.000.365.760.233.340.1830.391.8813.280.870.780.050.610.0254.931.600.400.01332032268.110.01213310185410164711196210.50.2810.29314.13315.201673.60184.821868.712.904.49
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.org2Reduced pH1.160.020.070.010.060.010.780.01197.7112.100.530.010370.1019.121.800.2911.870.162.130.150.150.025.590.416.280.523.550.2628.022.0911.961.000.450.010.380.0147.274.930.220.02332033977.730.1084767767728636111.10.2810.87331.68332.81736.6533.91781.430.530.82
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.org2Ocean carbonation1.580.060.140.010.120.010.830.02308.8715.570.700.030439.9830.395.580.2714.530.702.250.070.380.036.470.489.240.115.190.1833.761.2714.310.870.720.040.650.0465.762.580.400.013320880498.080.025229174702334205464681628.71.6828.10857.78860.704264.97439.554732.626.9110.67
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.org2Ocean acidification1.270.020.120.010.080.010.690.01241.187.210.600.031402.4923.212.650.1811.440.461.810.050.230.026.340.265.860.424.610.1727.131.5416.140.810.780.040.580.0351.923.590.420.023320901147.720.0121621720501719251596229.40.4829.36896.30899.351945.3287.522062.191.382.12