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Liu, Yiwei; Rokitta, Sebastian D; Rost, Björn; Eagle, Robert A (2021): Seawater carbonate chemistry and growth rates, carbon utilization and the internal pH regulation at the site of calcification in Emiliania huxleyi, Calcidiscus leptoporus and Pleurochrysis [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.943274

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Abstract:
Ocean acidification (OA) appears to have diverse impacts on calcareous coccolithophores, but the cellular processes underlying these responses are not well understood. Here we use stable boron and carbon isotopes, B/Ca ratios, as well as inorganic and organic carbon production rates to investigate the carbon utilization and the internal pH regulation at the site of calcification in Emiliania huxleyi, Pleurochrysis carterae and Calcidiscus leptoporus cultured over a wide pCO2 range (180 to 1000 μatm). Despite large variability, the geochemistry data indicate species-specific modes of pH control and differences in the utilization of inorganic carbon. Boron isotope data suggest that all three species generally upregulate the pH of the calcification fluid (pHCF) compared to surrounding seawater, which coincides with relatively constant growth rates and cellular ratios of inorganic to organic carbon. Furthermore, species exhibit different strategies in regulating their pHCF, i.e., two species maintain homeostasis (pHCF = ∼ 8.7), while one species shows a constant offset to the surrounding seawater (ΔpH = ∼0.6 units) over the entire tested pCO2 range. In addition to these different strategies, carbon isotope data suggests that high plasticity in the utilization of dissolved inorganic carbon might be an explanation for species-specific differences in coccolithophore responses to OA.
Keyword(s):
Acid-base regulation; Biomass/Abundance/Elemental composition; Bottles or small containers/Aquaria (<20 L); Calcidiscus leptoporus; Calcification/Dissolution; Chromista; Emiliania huxleyi; Growth/Morphology; Haptophyta; Laboratory experiment; Laboratory strains; Not applicable; Other studied parameter or process; Pelagos; Phytoplankton; Pleurochrysis carterae; Primary production/Photosynthesis; Single species
Supplement to:
Liu, Yiwei; Rokitta, Sebastian D; Rost, Björn; Eagle, Robert A (2021): Constraints on coccolithophores under ocean acidification obtained from boron and carbon geochemical approaches. Geochimica et Cosmochimica Acta, 315, 317-332, https://doi.org/10.1016/j.gca.2021.09.025
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2021): seacarb: seawater carbonate chemistry with R. R package version 3.2.16. https://cran.r-project.org/web/packages/seacarb/index.html
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2022-04-13.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
TypeTypeLiu, Yiweistudy
SpeciesSpeciesLiu, Yiwei
Registration number of speciesReg spec noLiu, YiweiWoRMS Aphia ID
Uniform resource locator/link to referenceURL refLiu, Yiwei
IdentificationIDLiu, Yiwei
pHpHLiu, YiweiNBS scale
pH, standard deviationpH std dev±Liu, YiweiNBS scale
Growth rateµ1/dayLiu, YiweiSpecific
Growth rate, standard deviationµ std dev±Liu, YiweiSpecific
10 Carbon, organic, particulate, per cellPOC/cellpg/#Liu, Yiwei
11 Carbon, organic, particulate, standard deviationPOC std dev±Liu, Yiwei
12 Carbon, inorganic, particulate, per cellPIC/cellpg/#Liu, Yiwei
13 Particulate inorganic carbon per cell, standard deviationPIC/cell std dev±Liu, Yiwei
14 Carbon, organic, particulate, production per cellPOC prod/cellpg/#/dayLiu, Yiwei
15 Carbon, inorganic, particulate, production per cellPIC prod/cellpg/#/dayLiu, Yiwei
16 Particulate inorganic carbon/particulate organic carbon ratioPIC/POCLiu, Yiwei
17 Particulate inorganic carbon/particulate organic carbon ratio, standard deviationPIC/POC ratio std dev±Liu, Yiwei
18 δ13C, particulate organic carbonδ13C POC‰ PDBLiu, Yiwei
19 δ13C, particulate organic carbon, standard deviationδ13C POC std dev±Liu, Yiwei
20 δ13C, particulate inorganic carbonδ13C PICLiu, Yiwei
21 δ13C, particulate inorganic carbon, standard deviationδ13C PIC std dev±Liu, Yiwei
22 δ13C, dissolved inorganic carbonδ13C DIC‰ PDBLiu, Yiweit0
23 δ13C, dissolved inorganic carbonδ13C DIC‰ PDBLiu, Yiweitfin
24 δ13C, dissolved inorganic carbonδ13C DIC‰ PDBLiu, Yiweiaverage
25 δ13C, dissolved inorganic carbon, standard deviationδ13C DIC std dev±Liu, Yiwei
26 Difference δ13C, particulate organic carbon and dissolved inorganic carbonδ13C POC - δ13C DICLiu, Yiwei
27 Difference δ13C, particulate organic carbon and dissolved inorganic carbon, standard deviationδ13C POC - δ13C DIC std dev±Liu, Yiwei2 SD
28 Difference δ13C, particulate inorganic carbon and dissolved inorganic carbonδ13C PIC - δ13C DICLiu, Yiwei
29 Difference δ13C, particulate inorganic carbon and dissolved inorganic carbon, standard deviationδ13C PIC - δ13C DIC std dev±Liu, Yiwei2 SD
30 δ11Bδ11B‰ SRMLiu, Yiwei
31 δ11B, standard deviationδ11B std dev±Liu, Yiwei2 SD
32 Calcifying fluid, pHCF pHLiu, Yiwei
33 Calcifying fluid, pH, standard deviationCF pH std dev±Liu, Yiwei2 SD
34 pH, differenceDelta pHLiu, Yiwei
35 pH, difference, standard deviationDelta pH std dev±Liu, Yiwei2 SD
36 Boron/Calcium ratioB/Caµmol/molLiu, Yiwei
37 Boron/Calcium ratio, standard deviationB/Ca std dev±Liu, Yiwei2RSD
38 Magnesium/Calcium ratioMg/Cammol/molLiu, Yiwei
39 Magnesium/Calcium ratio, standard deviationMg/Ca std dev±Liu, Yiwei2RSD
40 Iron/Calcium ratioFe/Caµmol/molLiu, Yiwei
41 Iron/Calcium ratio, standard deviationFe/Ca std dev±Liu, Yiwei2RSD
42 SalinitySalLiu, Yiwei
43 pHpHLiu, YiweiPotentiometricNBS scale
44 pH, standard deviationpH std dev±Liu, YiweiPotentiometricNBS scale
45 Temperature, waterTemp°CLiu, Yiwei
46 Temperature, water, standard deviationTemp std dev±Liu, Yiwei
47 Carbon, inorganic, dissolvedDICµmol/kgLiu, YiweiCalculated using CO2SYS
48 Carbon, inorganic, dissolved, standard deviationDIC std dev±Liu, YiweiCalculated using CO2SYS
49 Alkalinity, totalATµmol/kgLiu, YiweiPotentiometric titration
50 Alkalinity, total, standard deviationAT std dev±Liu, YiweiPotentiometric titration
51 Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
52 pHpHYang, YanCalculated using seacarb after Nisumaa et al. (2010)total scale
53 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
54 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
55 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
56 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
57 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
58 Alkalinity, totalATµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
59 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
60 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
1945 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Type
(study)

Species

Reg spec no
(WoRMS Aphia ID)

URL ref

ID

pH
(NBS scale)

pH std dev [±]
(NBS scale)

µ [1/day]
(Specific)

µ std dev [±]
(Specific)
10 
POC/cell [pg/#]
11 
POC std dev [±]
12 
PIC/cell [pg/#]
13 
PIC/cell std dev [±]
14 
POC prod/cell [pg/#/day]
15 
PIC prod/cell [pg/#/day]
16 
PIC/POC
17 
PIC/POC ratio std dev [±]
18 
δ13C POC [‰ PDB]
19 
δ13C POC std dev [±]
20 
δ13C PIC []
21 
δ13C PIC std dev [±]
22 
δ13C DIC [‰ PDB]
(t0)
23 
δ13C DIC [‰ PDB]
(tfin)
24 
δ13C DIC [‰ PDB]
(average)
25 
δ13C DIC std dev [±]
26 
δ13C POC - δ13C DIC []
27 
δ13C POC - δ13C DIC std dev [±]
(2 SD)
28 
δ13C PIC - δ13C DIC []
29 
δ13C PIC - δ13C DIC std dev [±]
(2 SD)
30 
δ11B [‰ SRM]
31 
δ11B std dev [±]
(2 SD)
32 
CF pH
33 
CF pH std dev [±]
(2 SD)
34 
Delta pH
35 
Delta pH std dev [±]
(2 SD)
36 
B/Ca [µmol/mol]
37 
B/Ca std dev [±]
(2RSD)
38 
Mg/Ca [mmol/mol]
39 
Mg/Ca std dev [±]
(2RSD)
40 
Fe/Ca [µmol/mol]
41 
Fe/Ca std dev [±]
(2RSD)
42 
Sal
43 
pH
(NBS scale, Potentiometric)
44 
pH std dev [±]
(NBS scale, Potentiometric)
45 
Temp [°C]
46 
Temp std dev [±]
47 
DIC [µmol/kg]
(Calculated using CO2SYS)
48 
DIC std dev [±]
(Calculated using CO2SYS)
49 
AT [µmol/kg]
(Potentiometric titration)
50 
AT std dev [±]
(Potentiometric titration)
51 
CSC flag
(Calculated using seacarb afte...)
52 
pH
(total scale, Calculated using...)
53 
CO2 [µmol/kg]
(Calculated using seacarb afte...)
54 
fCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
55 
pCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
56 
[HCO3]- [µmol/kg]
(Calculated using seacarb afte...)
57 
[CO3]2- [µmol/kg]
(Calculated using seacarb afte...)
58 
AT [µmol/kg]
(Calculated using seacarb afte...)
59 
Omega Arg
(Calculated using seacarb afte...)
60 
Omega Cal
(Calculated using seacarb afte...)
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orgEH180A8.3210.0070.770.0714.790.2011.730.4311.409.040.790.03-32.230.04-13.2800.00-14.80-14.89-14.840.06-17.390.151.560.1322.561.668.480.140.160.1419.002.280.140.02157.4911.0234.108.290.0117.170.841955.8638.472294.0920.47278.179.77276.75277.731741.28204.852248.803.174.92
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orgEH180B8.3510.0210.760.0816.310.0812.460.2812.419.480.760.02-38.810.13-19.8900.00-21.81-21.12-21.470.49-17.341.011.580.9820.342.440.430.06101.037.0734.108.320.0117.230.911912.7083.082267.4749.63278.208.85251.27252.161690.60213.252220.303.305.12
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orgEH180C8.3420.0120.780.0118.520.4014.570.4214.4911.400.790.03-38.130.01-19.6200.00-21.11-20.74-20.930.26-17.200.521.310.5225.851.908.690.110.350.1213.401.610.290.0491.346.3934.108.310.0117.230.771951.4766.792296.1618.20278.199.26262.74263.671728.94213.302257.003.305.12
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orgEH380A8.1110.0030.850.0421.130.6316.220.9517.9913.800.770.05-28.180.02-7.1800.01-9.08-8.53-8.810.39-19.370.771.620.7728.741.668.880.110.770.1134.108.080.0017.100.442050.1242.882275.8340.48277.9617.20486.27487.991895.22137.682236.602.133.31
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orgEH380B8.0940.0070.940.0716.160.1810.930.2315.1210.220.680.02-28.880.21-6.6500.01-8.32-8.29-8.310.02-20.570.411.660.0323.491.668.540.130.450.1334.108.060.0117.620.752052.3136.732281.0534.76277.9418.05518.10519.921901.16133.092231.102.063.20
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orgEH380C8.1010.0170.890.0218.030.2811.230.7515.999.950.620.04-32.220.02-12.2500.01-14.20-13.71-13.960.34-18.260.691.710.6920.192.420.320.04106.027.4234.108.070.0117.370.842052.0741.272274.4541.99277.9517.72504.97506.741899.57134.812233.802.093.24
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orgEH750A7.8870.0240.900.0813.190.049.590.1111.818.590.730.01-40.310.11-22.4600.00-24.05-23.67-23.860.27-16.450.581.400.5419.112.290.280.04398.2427.8834.107.860.0217.220.572169.8620.702283.7831.77277.7431.11882.75885.872049.6189.182270.001.382.14
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orgEH750B7.8820.0260.830.0318.570.0711.670.5315.409.680.630.03-40.280.42-23.2400.00-25.24-24.69-24.960.39-15.321.141.720.7822.431.668.470.140.590.1519.812.380.220.03105.307.3734.107.860.0217.030.592162.1824.582280.4035.46277.7431.33884.03887.152043.1387.742260.201.362.11
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orgEH750C7.8780.0280.820.0715.710.7411.800.7612.819.620.750.06-42.700.04-23.4300.01-25.61-24.95-25.280.47-17.420.941.850.9322.271.908.460.120.580.1322.532.700.280.04111.427.8034.107.850.0217.400.772158.8928.452276.4639.79277.7331.65902.83906.012040.1587.092255.601.352.09
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orgEH1000A7.7640.0210.730.0813.160.1810.592.089.627.750.810.16-39.610.56-20.4900.00-22.41-22.26-22.340.10-17.271.131.840.2129.721.668.940.111.180.1222.452.690.310.04186.5313.0634.107.740.0217.200.442192.1725.382301.6912.14277.6241.861186.931191.122081.9768.382251.201.061.64
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orgEH1000B7.8000.0650.920.1711.310.347.810.3610.417.180.690.04-43.400.10-23.5300.01-24.82-24.84-24.830.01-18.570.211.290.0334.107.770.0617.220.642160.9672.402259.6358.22277.6537.961077.111080.912049.9373.112231.201.131.76
laboratoryEmiliania huxleyi (phytoplankton)115104marinespecies.orgEH1000C7.7710.0250.840.0317.740.509.461.0014.867.920.530.06-40.330.13-23.6700.01-25.70-25.32-25.510.27-14.820.601.840.5320.801.908.360.130.590.1434.107.740.0217.530.772189.7445.682280.6635.18277.6241.171178.831182.982078.8769.662251.201.081.67
laboratoryCalcidiscus leptoporus (phytoplankton)235923marinespecies.orgCL180A8.3610.0280.3963.910.2331.205.8324.7812.100.490.09-36.170.15-21.2470.01-19.20-18.81-19.000.28-17.160.64-2.240.5635.131.909.400.211.040.21119.954.8011.591.53539.6337.7733.908.330.0217.400.771986.597.482321.1018.81278.219.02256.92257.831752.64224.942306.603.495.41
laboratoryCalcidiscus leptoporus (phytoplankton)235923marinespecies.orgCL180B8.3550.0150.3762.681.2234.554.6423.1212.750.550.07-34.860.37-18.9910.02-16.79-16.40-16.600.28-18.260.93-2.390.5519.451.908.260.15-0.100.1533.908.330.0117.020.461981.477.752316.7013.99278.219.09256.25257.151751.07221.342296.803.435.32
laboratoryCalcidiscus leptoporus (phytoplankton)235923marinespecies.orgCL180C8.3500.0110.3957.341.3931.207.4322.6412.320.540.13-34.690.02-19.7570.01-17.80-17.76-17.780.03-16.920.07-1.980.0675.833.037.430.98966.0367.6233.908.320.0116.970.511982.205.342316.3413.60278.209.20258.76259.681753.66219.352294.603.405.27
laboratoryCalcidiscus leptoporus (phytoplankton)235923marinespecies.orgCL380A8.1280.0180.380.0565.642.7230.543.5524.8711.570.470.06-35.380.07-17.9500.01-16.61-16.60-16.610.01-18.780.14-1.340.0327.141.908.780.110.650.1233.908.100.0117.170.702081.9412.562311.888.71277.9816.82476.13477.811920.78144.302277.002.243.47
laboratoryCalcidiscus leptoporus (phytoplankton)235923marinespecies.orgCL380B8.1220.0210.380.0673.069.6334.1013.4427.7912.970.470.19-35.091.01-19.03-19.04-19.030.01-16.062.0233.908.090.0117.250.712085.365.612313.8510.87277.9717.14486.10487.811925.69142.572277.602.213.43
laboratoryCalcidiscus leptoporus (phytoplankton)235923marinespecies.orgCL380C8.1200.0210.340.0765.252.4234.637.6621.9311.640.530.12-35.140.19-15.86-15.60-15.730.18-19.420.5233.908.090.0217.100.442086.826.682308.024.49277.9717.19485.61487.331927.57142.042278.202.203.42
laboratoryCalcidiscus leptoporus (phytoplankton)235923marinespecies.orgCL750A7.8700.0230.430.1754.380.8824.404.0023.6410.610.450.07-43.030.08-25.5180.01-25.21-25.01-25.110.14-17.920.33-0.410.2834.951.909.380.201.510.2033.907.840.0117.350.712215.3413.892319.9517.56277.7233.16943.40946.722094.8287.322309.701.352.10
laboratoryCalcidiscus leptoporus (phytoplankton)235923marinespecies.orgCL750B7.8640.0280.450.1054.891.6235.872.6524.6016.080.650.05-39.700.51-25.40-24.73-25.060.48-14.641.3933.907.840.0216.930.402214.616.142311.958.79277.7233.51941.81945.152095.2185.872306.701.332.07
laboratoryCalcidiscus leptoporus (phytoplankton)235923marinespecies.orgCL750C7.8390.0240.420.1256.372.0037.466.5023.7015.750.660.12-40.680.42-25.0530.01-25.22-24.81-25.010.29-15.671.02-0.040.5728.351.908.860.121.020.1333.907.810.0217.150.602213.154.012309.155.72277.6935.551005.461009.012096.2481.312296.601.261.96
laboratoryCalcidiscus leptoporus (phytoplankton)235923marinespecies.orgCL1000A7.7570.0100.210.14155.563.3341.863.3533.258.950.270.02-36.040.24-25.93-25.29-25.610.45-10.431.0282.123.280.680.09636.0344.5233.907.730.0017.250.712205.1027.782324.0822.07277.6142.881216.281220.572094.8067.432261.401.041.62
laboratoryCalcidiscus leptoporus (phytoplankton)235923marinespecies.orgCL1000B7.7620.0280.250.0771.911.7553.686.5218.1213.520.750.09-38.100.28-26.10-25.55-25.820.39-12.280.9633.907.740.0217.180.572203.3914.692324.8522.92277.6242.381199.731203.972092.9968.032261.101.051.64
laboratoryCalcidiscus leptoporus (phytoplankton)235923marinespecies.orgCL1000C7.7620.0280.340.0261.580.1731.294.1721.0410.700.510.07-40.570.27-25.31-25.37-25.340.04-15.230.5433.907.730.0217.380.712212.905.342324.7322.79277.6142.641214.171218.442101.8668.402270.701.061.65
laboratoryPleurochrysis carterae (phytoplankton)235969marinespecies.orgPC180D8.3990.0430.770.07128.967.4423.199.1999.1417.830.180.07-31.590.17-9.3300.01-9.98-9.00-9.490.69-22.101.430.161.3828.351.908.880.120.480.1430.808.370.0416.900.481971.7133.932352.181.13278.258.49234.35235.181740.05223.162283.903.505.48
laboratoryPleurochrysis carterae (phytoplankton)235969marinespecies.orgPC180E8.3810.0350.880.54176.202.2726.659.60155.4123.510.150.05-30.630.04-7.4900.0135.491.909.460.221.080.2330.808.360.0316.720.531988.2523.782356.817.76278.238.94245.41246.281762.41216.852290.703.405.32
laboratoryPleurochrysis carterae (phytoplankton)235969marinespecies.orgPC180F8.3740.0350.810.50166.8014.4432.5815.40135.2926.430.200.09-31.410.82-7.9700.01-8.51-8.64-8.580.09-22.831.660.610.1833.111.909.220.150.850.1730.808.350.0317.040.471990.2025.112354.524.63278.229.16253.76254.651767.15213.902288.203.365.25
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laboratoryPleurochrysis carterae (phytoplankton)235969marinespecies.orgPC380E8.1460.0790.860.58141.614.2016.989.44121.2114.530.120.07-32.410.03-6.5200.01-6.62-5.83-6.220.56-26.181.12-0.301.1228.721.908.900.120.750.2061.821.247.200.95899.5862.9730.808.120.0717.001.002084.9237.672353.803.64278.0016.84466.24467.881929.51138.542267.702.173.40
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