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Noisette, Fanny; Calosi, Piero; Madeira, Diana; Chemel, Mathilde; Menu-Courey, Kayla; Piedalue, Sarah; Gurney-Smith, Helen; Daoud, Dounia; Azetsu-Scott, Kumiko (2021): Seawater carbonate chemistry and stage survival and morphological measurements, mineral contents and resting metabolic rates of larvae and juvenile American Lobster [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.942695

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Abstract:
Bentho-pelagic life cycles are the dominant reproductive strategy in marine invertebrates, providing great dispersal ability, access to different resources, and the opportunity to settle in suitable habitats upon the trigger of environmental cues at key developmental moments. However, free-dispersing larvae can be highly sensitive to environmental changes. Among these, the magnitude and the occurrence of elevated carbon dioxide (CO2) concentrations in oceanic habitats is predicted to exacerbate over the next decades, particularly in coastal areas, reaching levels beyond those historically experienced by most marine organisms. Here, we aimed to determine the sensitivity to elevated pCO2 of successive life stages of a marine invertebrate species with a bentho-pelagic life cycle, exposed continuously during its early ontogeny, whilst providing in-depth insights on their metabolic responses. We selected, as an ideal study species, the American lobster Homarus americanus, and investigated life history traits, whole-organism physiology, and metabolomic fingerprints from larval stage I to juvenile stage V exposed to different pCO2 levels. Current and future ocean acidification scenarios were tested, as well as extreme high pCO2/low pH conditions that are predicted to occur in coastal benthic habitats and with leakages from underwater carbon capture storage (CCS) sites. Larvae demonstrated greater tolerance to elevated pCO2, showing no significant changes in survival, developmental time, morphology, and mineralisation, although they underwent intense metabolomic reprogramming. Conversely, juveniles showed the inverse pattern, with a reduction in survival and an increase in development time at the highest pCO2 levels tested, with no indication of metabolomic reprogramming. Metabolomic sensitivity to elevated pCO2 increased until metamorphosis (between larval and juvenile stages) and decreased afterward, suggesting this transition as a metabolic keystone for marine invertebrates with complex life cycles.
Keyword(s):
Animalia; Arthropoda; Benthic animals; Biomass/Abundance/Elemental composition; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Growth/Morphology; Homarus americanus; Laboratory experiment; Mortality/Survival; North Atlantic; Pelagos; Respiration; Single species; Temperate; Zooplankton
Supplement to:
Noisette, Fanny; Calosi, Piero; Madeira, Diana; Chemel, Mathilde; Menu-Courey, Kayla; Piedalue, Sarah; Gurney-Smith, Helen; Daoud, Dounia; Azetsu-Scott, Kumiko (2021): Tolerant Larvae and Sensitive Juveniles: Integrating Metabolomics and Whole-Organism Responses to Define Life-Stage Specific Sensitivity to Ocean Acidification in the American Lobster. Metabolites, 11(9), 584, https://doi.org/10.3390/metabo11090584
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2021): seacarb: seawater carbonate chemistry with R. R package version 3.2.16. https://cran.r-project.org/web/packages/seacarb/index.html
Coverage:
Latitude: 47.779722 * Longitude: -63.286389
Event(s):
Shippagan * Latitude: 47.779722 * Longitude: -63.286389 * Method/Device: Experiment (EXP)
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2022-03-22.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
TypeTypeNoisette, Fannystudy
SpeciesSpeciesNoisette, Fanny
Registration number of speciesReg spec noNoisette, FannyWoRMS Aphia ID
Uniform resource locator/link to referenceURL refNoisette, Fanny
StageStageNoisette, Fanny
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmNoisette, Fanny
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air), standard errorpCO2water_SST_wet std e±Noisette, Fanny
SurvivalSurvival%Noisette, Fanny
Survival rate, standard errorSurvival rate std e±Noisette, Fanny
10 LengthlmmNoisette, FannyRostrum
11 Length, standard errorl std e±Noisette, FannyRostrum
12 LengthlmmNoisette, FannyCephalothorax
13 Length, standard errorl std e±Noisette, FannyCephalothorax
14 LengthlmmNoisette, FannyAbdomen
15 Length, standard errorl std e±Noisette, FannyAbdomen
16 LengthlmmNoisette, FannyTail
17 Length, standard errorl std e±Noisette, FannyTail
18 LengthlmmNoisette, FannyClaw
19 Length, standard errorl std e±Noisette, FannyClaw
20 LengthlmmNoisette, FannyTotal
21 Length, standard errorl std e±Noisette, FannyTotal
22 RatioRatioNoisette, FannyAbdomen/Total length
23 Ratio, standard errorRatio std e±Noisette, FannyAbdomen/Total length
24 RatioRatioNoisette, FannyCephalothorax/Total length
25 Ratio, standard errorRatio std e±Noisette, FannyCephalothorax/Total length
26 RatioRatioNoisette, FannyCephalothorax/Abdomen
27 Ratio, standard errorRatio std e±Noisette, FannyCephalothorax/Abdomen
28 ReplicatesRepl#Noisette, Fanny
29 CalciumCamg/gNoisette, Fanny
30 Calcium, standard errorCa std e±Noisette, Fanny
31 MagnesiumMgmg/gNoisette, Fanny
32 Magnesium, standard errorMg std e±Noisette, Fanny
33 SodiumNamg/gNoisette, Fanny
34 Sodium, standard errorNa std e±Noisette, Fanny
35 PotassiumKmg/gNoisette, Fanny
36 Potassium, standard errorK+ std e±Noisette, Fanny
37 StrontiumSrmg/gNoisette, Fanny
38 Strontium, standard errorSr std e±Noisette, Fanny
39 Magnesium/Calcium ratioMg/CaNoisette, Fanny
40 Magnesium/Calcium ratio, standard errorMg/Ca std e±Noisette, Fanny
41 Calcium/Magnesium ratioCa/MgNoisette, Fanny
42 Calcium/Magnesium ratio, standard errorCa/Mg std e±Noisette, Fanny
43 Metabolic rate of oxygen, restingMR O2 restµmol/hNoisette, Fanny
44 Metabolic rate of oxygen, standard errorMR O2 std e±Noisette, Fanny
45 Metabolic rate of oxygen, resting, normalizedMR O2 rest normµmol/g/hNoisette, Fanny
46 Metabolic rate of oxygen, standard errorMR O2 std e±Noisette, Fanny
47 Temperature, waterTemp°CNoisette, Fanny
48 Temperature, water, standard errorT std e±Noisette, Fanny
49 SalinitySalNoisette, Fanny
50 Salinity, standard errorSal std e±Noisette, Fanny
51 Oxygen saturationO2 sat%Noisette, Fanny
52 Oxygen saturation, standard errorO2 sat std e±Noisette, Fanny
53 pHpHNoisette, FannyPotentiometrictotal scale
54 pH, standard errorpH std e±Noisette, FannyPotentiometrictotal scale
55 Alkalinity, totalATµmol/kgNoisette, FannyPotentiometric titration
56 Alkalinity, total, standard errorAT std e±Noisette, FannyPotentiometric titration
57 Carbon, inorganic, dissolvedDICµmol/kgNoisette, FannyCalculated using CO2SYS
58 Carbon, inorganic, dissolved, standard errorDIC std e±Noisette, FannyCalculated using CO2SYS
59 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmNoisette, FannyCalculated using CO2SYS
60 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air), standard errorpCO2water_SST_wet std e±Noisette, FannyCalculated using CO2SYS
61 Bicarbonate ion[HCO3]-µmol/kgNoisette, FannyCalculated using CO2SYS
62 Bicarbonate ion, standard error[HCO3]- std e±Noisette, FannyCalculated using CO2SYS
63 Carbonate ion[CO3]2-µmol/kgNoisette, FannyCalculated using CO2SYS
64 Carbonate ion, standard error[CO3]2- std e±Noisette, FannyCalculated using CO2SYS
65 Calcite saturation stateOmega CalNoisette, FannyCalculated using CO2SYS
66 Calcite saturation state, standard errorOmega Cal std e±Noisette, FannyCalculated using CO2SYS
67 Aragonite saturation stateOmega ArgNoisette, FannyCalculated using CO2SYS
68 Aragonite saturation state, standard errorOmega Arg std e±Noisette, FannyCalculated using CO2SYS
69 Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
70 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
71 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
72 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
73 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
74 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
75 Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
76 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
77 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
2541 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Type
(study)

Species

Reg spec no
(WoRMS Aphia ID)

URL ref

Stage

pCO2water_SST_wet [µatm]

pCO2water_SST_wet std e [±]

Survival [%]

Survival rate std e [±]
10 
l [mm]
(Rostrum)
11 
l std e [±]
(Rostrum)
12 
l [mm]
(Cephalothorax)
13 
l std e [±]
(Cephalothorax)
14 
l [mm]
(Abdomen)
15 
l std e [±]
(Abdomen)
16 
l [mm]
(Tail)
17 
l std e [±]
(Tail)
18 
l [mm]
(Claw)
19 
l std e [±]
(Claw)
20 
l [mm]
(Total)
21 
l std e [±]
(Total)
22 
Ratio
(Abdomen/Total length)
23 
Ratio std e [±]
(Abdomen/Total length)
24 
Ratio
(Cephalothorax/Total length)
25 
Ratio std e [±]
(Cephalothorax/Total length)
26 
Ratio
(Cephalothorax/Abdomen)
27 
Ratio std e [±]
(Cephalothorax/Abdomen)
28 
Repl [#]
29 
Ca [mg/g]
30 
Ca std e [±]
31 
Mg [mg/g]
32 
Mg std e [±]
33 
Na [mg/g]
34 
Na std e [±]
35 
K [mg/g]
36 
K+ std e [±]
37 
Sr [mg/g]
38 
Sr std e [±]
39 
Mg/Ca
40 
Mg/Ca std e [±]
41 
Ca/Mg
42 
Ca/Mg std e [±]
43 
MR O2 rest [µmol/h]
44 
MR O2 std e [±]
45 
MR O2 rest norm [µmol/g/h]
46 
MR O2 std e [±]
47 
Temp [°C]
48 
T std e [±]
49 
Sal
50 
Sal std e [±]
51 
O2 sat [%]
52 
O2 sat std e [±]
53 
pH
(total scale, Potentiometric)
54 
pH std e [±]
(total scale, Potentiometric)
55 
AT [µmol/kg]
(Potentiometric titration)
56 
AT std e [±]
(Potentiometric titration)
57 
DIC [µmol/kg]
(Calculated using CO2SYS)
58 
DIC std e [±]
(Calculated using CO2SYS)
59 
pCO2water_SST_wet [µatm]
(Calculated using CO2SYS)
60 
pCO2water_SST_wet std e [±]
(Calculated using CO2SYS)
61 
[HCO3]- [µmol/kg]
(Calculated using CO2SYS)
62 
[HCO3]- std e [±]
(Calculated using CO2SYS)
63 
[CO3]2- [µmol/kg]
(Calculated using CO2SYS)
64 
[CO3]2- std e [±]
(Calculated using CO2SYS)
65 
Omega Cal
(Calculated using CO2SYS)
66 
Omega Cal std e [±]
(Calculated using CO2SYS)
67 
Omega Arg
(Calculated using CO2SYS)
68 
Omega Arg std e [±]
(Calculated using CO2SYS)
69 
CSC flag
(Calculated using seacarb afte...)
70 
CO2 [µmol/kg]
(Calculated using seacarb afte...)
71 
fCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
72 
pCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
73 
[HCO3]- [µmol/kg]
(Calculated using seacarb afte...)
74 
[CO3]2- [µmol/kg]
(Calculated using seacarb afte...)
75 
DIC [µmol/kg]
(Calculated using seacarb afte...)
76 
Omega Arg
(Calculated using seacarb afte...)
77 
Omega Cal
(Calculated using seacarb afte...)
laboratoryHomarus americanus (crustaceans)156134marinespecies.orgI4002051131.610.041.790.032.680.051.330.050.810.044.470.070.600.010.400.010.670.02378.3522.6940.8514.69153.5014.5133.228.261.130.270.500.032.040.130.130.0117.811.3217.970.0331.280.0399.701.047.990.002098.273.711922.371.18437.353.791773.581.85133.540.833.260.022.090.01815.26435.58437.101771.39131.801918.452.073.23
laboratoryHomarus americanus (crustaceans)156134marinespecies.orgI600185471.540.041.880.062.690.081.330.040.890.054.570.120.590.010.410.010.710.02348.0722.7213.406.5262.8030.1326.8413.030.710.390.230.065.111.570.160.0121.900.9817.950.0431.370.1096.891.807.850.012097.755.811983.514.03651.6821.511858.465.40102.322.212.500.051.600.03821.98627.61629.801849.9899.871971.831.572.45
laboratoryHomarus americanus (crustaceans)156134marinespecies.orgI800205971.570.031.900.052.800.061.400.030.750.034.700.060.600.010.400.010.690.03459.8611.4216.513.5680.5220.2932.306.240.750.150.270.013.700.180.150.0119.901.5917.970.0331.420.0897.441.667.780.012100.074.702007.843.34778.0318.921892.844.1987.871.632.150.041.380.03826.29751.18753.811884.8086.771997.861.362.12
laboratoryHomarus americanus (crustaceans)156134marinespecies.orgI10002047131.460.072.080.102.830.111.310.050.830.054.900.200.580.010.420.010.740.024103.2825.9623.613.14112.8417.5438.883.501.700.400.250.034.250.550.150.0116.931.4117.950.0431.400.0898.171.097.720.012092.043.042013.483.67897.6233.961903.574.2678.611.701.920.041.230.03830.49870.70873.741902.8676.212009.561.201.87
laboratoryHomarus americanus (crustaceans)156134marinespecies.orgI1200186751.560.042.080.092.910.121.380.050.940.064.990.200.580.010.420.010.720.03467.3518.7720.554.27133.4013.2844.757.730.960.250.370.103.170.630.150.0119.901.4417.880.0531.420.0699.241.037.620.012098.656.962054.434.111155.7636.471950.584.1563.471.431.550.030.990.02839.301120.041123.961945.4361.752046.480.971.51
laboratoryHomarus americanus (crustaceans)156134marinespecies.orgI2000155381.590.051.920.072.790.101.350.050.770.054.710.140.590.010.410.010.700.03379.7331.5615.114.5972.6620.6821.164.481.260.520.230.054.760.870.140.0119.641.3317.960.0431.370.0697.981.247.380.012107.734.712134.023.562062.2363.162023.852.4337.900.950.930.020.590.01870.702018.882025.942016.3336.902123.920.580.90
laboratoryHomarus americanus (crustaceans)156134marinespecies.orgI30002078101.480.061.900.082.790.081.340.050.830.034.680.140.600.010.400.010.680.02438.578.2512.752.3574.8317.3924.105.370.550.090.350.063.120.610.130.0118.001.9917.970.0331.330.0698.201.227.220.012100.108.372167.894.762974.2175.122037.573.9726.590.650.650.020.420.018103.222947.782958.112036.2925.762165.270.400.63
laboratoryHomarus americanus (crustaceans)156134marinespecies.orgII4001510001.650.072.300.083.280.131.370.050.940.055.580.200.590.010.410.010.710.023121.0740.0725.137.17106.9629.2037.319.112.050.670.220.014.680.260.190.0217.082.1117.970.0331.280.0399.701.047.990.002098.273.711922.371.18437.353.791773.581.85133.540.833.260.022.090.01815.26435.58437.101771.39131.801918.452.073.23
laboratoryHomarus americanus (crustaceans)156134marinespecies.orgII600179731.550.052.570.073.320.071.330.061.040.045.900.100.560.010.440.010.780.03399.0510.1719.842.9395.4820.7929.413.041.700.200.200.015.070.260.160.0115.500.8917.950.0431.370.1096.891.807.850.012097.755.811983.514.03651.6821.511858.465.40102.322.212.500.051.600.03821.98627.61629.801849.9899.871971.831.572.45
laboratoryHomarus americanus (crustaceans)156134marinespecies.orgII8002076171.510.072.680.053.490.071.390.051.080.046.160.090.570.010.430.010.770.024131.3759.4730.3811.63153.4939.2859.3621.012.381.100.470.253.720.970.170.0215.951.3917.970.0331.420.0897.441.667.780.012100.074.702007.843.34778.0318.921892.844.1987.871.632.150.041.380.03826.29751.18753.811884.8086.771997.861.362.12
laboratoryHomarus americanus (crustaceans)156134marinespecies.orgII1000149091.540.092.670.063.250.161.450.071.070.065.920.150.540.020.460.020.880.10398.1235.0223.784.93112.682.1440.763.231.650.680.290.063.820.740.170.0215.411.9617.950.0431.400.0898.171.097.720.012092.043.042013.483.67897.6233.961903.574.2678.611.701.920.041.230.03830.49870.70873.741902.8676.212009.561.201.87
laboratoryHomarus americanus (crustaceans)156134marinespecies.orgII12002081101.730.052.390.043.410.071.300.081.070.035.810.090.590.010.410.010.700.02483.4417.7918.503.3080.3711.6733.136.631.530.320.230.024.450.430.180.0117.941.1117.880.0531.420.0699.241.037.620.012098.656.962054.434.111155.7636.471950.584.1563.471.431.550.030.990.02839.301120.041123.961945.4361.752046.480.971.51
laboratoryHomarus americanus (crustaceans)156134marinespecies.orgII2000159641.600.082.560.063.560.071.370.061.050.046.120.100.580.010.420.010.720.02362.825.9312.181.4160.847.9920.301.051.090.130.190.015.180.150.240.1016.503.4317.960.0431.370.0697.981.247.380.012107.734.712134.023.562062.2363.162023.852.4337.900.950.930.020.590.01870.702018.882025.942016.3336.902123.920.580.90
laboratoryHomarus americanus (crustaceans)156134marinespecies.orgII3000156381.580.062.390.063.300.071.330.051.020.035.690.100.580.010.420.010.730.02363.8519.9013.803.4355.1114.1524.737.591.110.350.230.024.500.340.200.0218.961.6617.970.0331.330.0698.201.227.220.012100.108.372167.894.762974.2175.122037.573.9726.590.650.650.020.420.018103.222947.782958.112036.2925.762165.270.400.63
laboratoryHomarus americanus (crustaceans)156134marinespecies.orgIII4001561101.970.072.920.053.760.071.630.081.480.066.680.090.560.010.440.010.780.02383.8718.1713.874.0463.5813.6422.459.191.420.320.160.016.350.510.170.0211.221.3017.970.0331.280.0399.701.047.990.002098.273.711922.371.18437.353.791773.581.85133.540.833.260.022.090.01815.26435.58437.101771.39131.801918.452.073.23
laboratoryHomarus americanus (crustaceans)156134marinespecies.orgIII6001587101.850.122.780.143.610.151.500.111.410.086.390.280.570.010.430.010.770.023101.5820.4316.843.1676.0917.8029.005.041.770.350.170.006.010.160.180.0211.091.2217.950.0431.370.1096.891.807.850.012097.755.811983.514.03651.6821.511858.465.40102.322.212.500.051.600.03821.98627.61629.801849.9899.871971.831.572.45
laboratoryHomarus americanus (crustaceans)156134marinespecies.orgIII800207691.900.102.970.053.850.081.730.061.520.036.810.080.560.010.440.010.780.03460.3110.7110.762.2839.266.8920.604.821.110.210.170.015.780.330.320.0218.291.0117.970.0331.420.0897.441.667.780.012100.074.702007.843.34778.0318.921892.844.1987.871.632.150.041.380.03826.29751.18753.811884.8086.771997.861.362.12
laboratoryHomarus americanus (crustaceans)156134marinespecies.orgIII1000205991.860.053.010.043.740.081.690.051.480.046.750.090.550.010.450.010.810.024112.3649.0819.538.4382.3731.1433.0316.551.980.860.170.015.850.360.160.0210.701.6917.950.0431.400.0898.171.097.720.012092.043.042013.483.67897.6233.961903.574.2678.611.701.920.041.230.03830.49870.70873.741902.8676.212009.561.201.87
laboratoryHomarus americanus (crustaceans)156134marinespecies.orgIII1200208671.970.072.930.053.600.061.680.031.500.046.540.090.550.000.450.000.820.014142.7583.7826.8516.08106.1762.4353.6732.892.631.560.190.015.330.240.280.0216.491.0217.880.0531.420.0699.241.037.620.012098.656.962054.434.111155.7636.471950.584.1563.471.431.550.030.990.02839.301120.041123.961945.4361.752046.480.971.51
laboratoryHomarus americanus (crustaceans)156134marinespecies.orgIII2000147892.010.093.080.043.810.071.680.031.560.056.880.090.550.000.450.000.810.01360.052.659.900.5542.684.6918.211.391.050.030.170.016.100.400.320.0318.041.0617.960.0431.370.0697.981.247.380.012107.734.712134.023.562062.2363.162023.852.4337.900.950.930.020.590.01870.702018.882025.942016.3336.902123.920.580.90
laboratoryHomarus americanus (crustaceans)156134marinespecies.orgIII30001571101.690.103.150.043.830.051.670.051.470.056.970.080.550.000.450.000.820.013110.0128.8019.066.2679.3226.1535.0712.961.940.530.170.015.990.520.310.0218.491.2217.970.0331.330.0698.201.227.220.012100.108.372167.894.762974.2175.122037.573.9726.590.650.650.020.420.018103.222947.782958.112036.2925.762165.270.400.63
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