Not logged in
PANGAEA.
Data Publisher for Earth & Environmental Science

Reyes-Giler, Christopher L; Benson, Brooke E; Levy, M; Chen, Xuqing; Pires, Anthony; Pechenik, Jan A; Davies, Sarah W (2021): Seawater carbonate chemistry and larval growth, metamorphosis, and juvenile shell growth [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.942641

Always quote citation above when using data! You can download the citation in several formats below.

RIS CitationBibTeX Citation

Abstract:
Rising atmospheric CO2 reduces seawater pH causing ocean acidification (OA). Understanding how resilient marine organisms respond to OA may help predict how community dynamics will shift as CO2 continues rising. The common slipper shell snail Crepidula fornicata is a marine gastropod native to eastern North America that has been a successful invader along the western European coastline and elsewhere. It has also been previously shown to be resilient to global change stressors. To examine the mechanisms underlying C. fornicata's resilience to OA, we conducted two controlled laboratory experiments. First, we examined several phenotypes and genome-wide gene expression of C. fornicata in response to pH treatments (7.5, 7.6, and 8.0) throughout the larval stage and then tested how conditions experienced as larvae influenced juvenile stages (i.e., carry-over effects). Second, we examined genome-wide gene expression patterns of C. fornicata larvae in response to acute (4, 10, 24, and 48 h) pH treatment (7.5 and 8.0). Both C. fornicata larvae and juveniles exhibited resilience to OA and their gene expression responses highlight the role of transcriptome plasticity in this resilience. Larvae did not exhibit reduced growth under OA until they were at least 8 days old. These phenotypic effects were preceded by broad transcriptomic changes, which likely served as an acclimation mechanism for combating reduced pH conditions frequently experienced in littoral zones. Larvae reared in reduced pH conditions also took longer to become competent to metamorphose. In addition, while juvenile sizes at metamorphosis reflected larval rearing pH conditions, no carry-over effects on juvenile growth rates were observed. Transcriptomic analyses suggest increased metabolism under OA, which may indicate compensation in reduced pH environments. Transcriptomic analyses through time suggest that these energetic burdens experienced under OA eventually dissipate, allowing C. fornicata to reduce metabolic demands and acclimate to reduced pH. Carry-over effects from larval OA conditions were observed in juveniles; however, these effects were larger for more severe OA conditions and larvae reared in those conditions also demonstrated less transcriptome elasticity. This study highlights the importance of assessing the effects of OA across life history stages and demonstrates how transcriptomic plasticity may allow highly resilient organisms, like C. fornicata, to acclimate to reduced pH environments.
Keyword(s):
Animalia; Benthic animals; Benthos; Bottles or small containers/Aquaria (<20 L); Coast and continental shelf; Crepidula fornicata; Development; Gene expression (incl. proteomics); Growth/Morphology; Laboratory experiment; Mollusca; North Pacific; Pelagos; Single species; Temperate; Zooplankton
Supplement to:
Reyes-Giler, Christopher L; Benson, Brooke E; Levy, M; Chen, Xuqing; Pires, Anthony; Pechenik, Jan A; Davies, Sarah W (2021): The marine gastropod Crepidula fornicata remains resilient to ocean acidification across two life history stages. Frontiers in Physiology, 12, 702864, https://doi.org/10.3389/fphys.2021.702864
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2021): seacarb: seawater carbonate chemistry with R. R package version 3.2.16. https://cran.r-project.org/web/packages/seacarb/index.html
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2022-03-22.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1TypeTypeDavies, Sarah Wstudy
2SpeciesSpeciesDavies, Sarah W
3Registration number of speciesReg spec noDavies, Sarah WWoRMS Aphia ID
4Uniform resource locator/link to referenceURL refDavies, Sarah W
5StageStageDavies, Sarah W
6TreatmentTreatDavies, Sarah W
7Growth rateµµm/dayDavies, Sarah W
8Shell lengthShell lmmDavies, Sarah W0 day post-metamorphosis
9Shell lengthShell lmmDavies, Sarah W4 day post-metamorphosis
10Shell lengthShell lmmDavies, Sarah W
11Day of experimentDOEdayDavies, Sarah W
12ProportionPropDavies, Sarah WTissue mass
13ProportionPropDavies, Sarah WShell mass
14ProportionPropDavies, Sarah Wlarvae that metamorphosed
15pHpHDavies, Sarah WPotentiometrictotal scale, new seawater added to cultures
16pH, standard deviationpH std dev±Davies, Sarah WPotentiometrictotal scale, new seawater added to cultures
17SalinitySalDavies, Sarah W
18Salinity, standard deviationSal std dev±Davies, Sarah W
19Temperature, waterTemp°CDavies, Sarah W
20Temperature, water, standard deviationTemp std dev±Davies, Sarah W
21Alkalinity, totalATµmol/kgDavies, Sarah WPotentiometric titration
22Alkalinity, total, standard deviationAT std dev±Davies, Sarah WPotentiometric titration
23Aragonite saturation stateOmega ArgDavies, Sarah WCalculated using CO2SYS
24Aragonite saturation state, standard deviationOmega Arg std dev±Davies, Sarah WCalculated using CO2SYS
25Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmDavies, Sarah WCalculated using CO2SYS
26Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Davies, Sarah WCalculated using CO2SYS
27pHpHDavies, Sarah WPotentiometrictotal scale, before regular seawater changes
28pH, standard deviationpH std dev±Davies, Sarah WPotentiometrictotal scale, before regular seawater changes
29Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
30Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
31Carbon dioxide, standard deviationCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
32Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
33Fugacity of carbon dioxide in seawater, standard deviationfCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
34Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
35Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
36Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
37Bicarbonate ion, standard deviation[HCO3]- std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
38Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
39Carbonate ion, standard deviation[CO3]2- std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
40Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
41Carbon, inorganic, dissolved, standard deviationDIC std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
42Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
43Aragonite saturation state, standard deviationOmega Arg std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
44Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
45Calcite saturation state, standard deviationOmega Cal std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
5376 data points

Download Data

Download dataset as tab-delimited text — use the following character encoding:

View dataset as HTML (shows only first 2000 rows)