Citation:

PANGAEA.942466

Name: Peacetime minicosm discrete sampling data
Published: 2021
License: https://creativecommons.org/licenses/by/4.0/

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Related to:

Gazeau, Frédéric; Van Wambeke, France; Marañón, Emilio; Pérez-Lorenzo, Maria; Alliouane, Samir; Stolpe, Christian; Blasco, Thierry; Leblond, Nathalie; Zäncker, Birthe; Engel, Anja; Marie, Barbara; Dinasquet, Julie; Guieu, Cecile (2021): Impact of dust addition on the metabolism of Mediterranean plankton communities and carbon export under present and future conditions of pH and temperature. Biogeosciences, 18(19), 5423-5446, https://doi.org/10.5194/bg-18-5423-2021

Further details:

Continuous temperature and irradiance data

In situ conditions

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2021): seacarb: seawater carbonate chemistry with R. R package version 3.2.16. https://cran.r-project.org/web/packages/seacarb/index.html

Coverage:

Median Latitude: 37.593333 * Median Longitude: 11.766667 * South-bound Latitude: 35.490000 * West-bound Longitude: 2.910000 * North-bound Latitude: 39.340000 * East-bound Longitude: 19.800000

Event(s):

FAST * Latitude: 37.950000 * Longitude: 2.910000 * Method/Device: Experiment (EXP)

ION * Latitude: 35.490000 * Longitude: 19.800000 * Method/Device: Experiment (EXP)

TYR * Latitude: 39.340000 * Longitude: 12.590000 * Method/Device: Experiment (EXP)

Comment:

In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2022-3-14.

Treatment D refer to tanks enriched with Saharan dust, G refer to tanks enriched with Saharan dust and maintained simultaneously under warmer (+3 ◦C) and acidified (−0.3 pH unit) conditions

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Event label	Event		Gazeau, Frédéric
2	Type	Type		Gazeau, Frédéric		Study
3	Experiment	Exp		Gazeau, Frédéric
4	Treatment	Treat		Gazeau, Frédéric
5	Identification	ID		Gazeau, Frédéric		Minicosm
6	Time point, descriptive	Time point		Gazeau, Frédéric		Sampling
7	Date	Date		Gazeau, Frédéric
8	Local Time	Local time		Gazeau, Frédéric
9	Incubation duration	Inc dur	h	Gazeau, Frédéric
10	Incubation duration	Inc dur	h	Gazeau, Frédéric		rates
11	Volume	Vol	l	Gazeau, Frédéric		prior to sampling
12	Salinity	Sal		Gazeau, Frédéric
13	Temperature, water	Temp	°C	Gazeau, Frédéric
14	pH	pH		Gazeau, Frédéric	Potentiometric	total scale
15	pH, standard deviation	pH std dev	±	Gazeau, Frédéric	Potentiometric	total scale
16	Alkalinity, total	AT	µmol/kg	Gazeau, Frédéric	Potentiometric titration
17	Alkalinity, total, standard deviation	AT std dev	±	Gazeau, Frédéric	Potentiometric titration
18	Carbon, inorganic, dissolved	DIC	µmol/kg	Gazeau, Frédéric	Calculated using seacarb
19	Carbon, inorganic, dissolved, standard error	DIC std e	±	Gazeau, Frédéric	Calculated using seacarb after Orr et al. (2018)
20	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Gazeau, Frédéric	Calculated using seacarb
21	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air), standard error	pCO2water_SST_wet std e	±	Gazeau, Frédéric	Calculated using seacarb after Orr et al. (2018)
22	Carbon dioxide	CO2	µmol/kg	Gazeau, Frédéric	Calculated using seacarb
23	Carbon dioxide, standard error	CO2 std e	±	Gazeau, Frédéric	Calculated using seacarb after Orr et al. (2018)
24	Bicarbonate ion	[HCO3]-	µmol/kg	Gazeau, Frédéric	Calculated using seacarb
25	Bicarbonate, standard error	[HCO3]- std e	±	Gazeau, Frédéric	Calculated using seacarb after Orr et al. (2018)
26	Carbonate ion	[CO3]2-	µmol/kg	Gazeau, Frédéric	Calculated using seacarb
27	Carbonate ion, standard error	[CO3]2- std e	±	Gazeau, Frédéric	Calculated using seacarb after Orr et al. (2018)
28	Aragonite saturation state	Omega Arg		Gazeau, Frédéric	Calculated using seacarb
29	Aragonite saturation state, standard error	Omega Arg std e	±	Gazeau, Frédéric	Calculated using seacarb after Orr et al. (2018)
30	Calcite saturation state	Omega Cal		Gazeau, Frédéric	Calculated using seacarb
31	Calcite saturation state, standard error	Omega Cal std e	±	Gazeau, Frédéric	Calculated using seacarb after Orr et al. (2018)
32	Nitrate	[NO3]-	nmol/l	Gazeau, Frédéric
33	Nitrate	[NO3]-	µmol/l	Gazeau, Frédéric
34	Nitrite	[NO2]-	µmol/l	Gazeau, Frédéric
35	Nitrate and Nitrite	[NO3]- + [NO2]-	µmol/l	Gazeau, Frédéric
36	Phosphate	[PO4]3-	µmol/l	Gazeau, Frédéric
37	Silicate	Si(OH)4	µmol/l	Gazeau, Frédéric
38	Ammonium	[NH4]+	µmol/l	Gazeau, Frédéric
39	Phosphorus, reactive soluble	SRP	µmol/l	Gazeau, Frédéric
40	Oxygen	O2	µmol/l	Gazeau, Frédéric
41	Oxygen, standard deviation	O2 std dev	±	Gazeau, Frédéric
42	Date	Date		Gazeau, Frédéric		BP_incubation time
43	Bacterial production	BP	ng/l/h	Gazeau, Frédéric
44	Bacterial biomass production of carbon, standard deviation	Bact prod std dev	±	Gazeau, Frédéric
45	Alkaline phosphatase, maximum hydrolysis velocity	Phos VM	nmol/l/h	Gazeau, Frédéric
46	Alkaline phosphatase, maximum hydrolysis velocity, standard deviation	Phos VM std dev	±	Gazeau, Frédéric
47	Alkaline phosphatase, Km value	ALKP Km	µmol/l	Gazeau, Frédéric
48	Alkaline phosphatase, Km value, standard deviation	ALKP Km std dev	±	Gazeau, Frédéric
49	Protease, maximum hydrolysis velocity	Prot VM	nmol/l/h	Gazeau, Frédéric
50	Protease, maximum hydrolysis velocity, standard deviation	Prot VM std dev	±	Gazeau, Frédéric
51	Michealis-Menten constant of protease	Prot Km	µmol/l	Gazeau, Frédéric
52	Michealis-Menten constant of protease, standard deviatione	Prot Km std dev	±	Gazeau, Frédéric
53	Respiration rate, oxygen	Resp O2	µmol/l/day	Gazeau, Frédéric
54	Respiration rate, oxygen, standard error	Resp O2 std e	±	Gazeau, Frédéric
55	Net community production of oxygen	NCP O2	µmol/l/day	Gazeau, Frédéric
56	Net community production of oxygen, standard error	NCP O2 std e	±	Gazeau, Frédéric
57	δ13C, dissolved inorganic carbon	δ13C DIC	‰ PDB	Gazeau, Frédéric
58	δ13C, dissolved organic carbon	δ13C DOC	‰ PDB	Gazeau, Frédéric
59	Net community production, cumulated	NCP cum	µmol/l	Gazeau, Frédéric		13C
60	Carbon, organic, dissolved	DOC	µmol/l	Gazeau, Frédéric
61	Coefficient of variation	CV	%	Gazeau, Frédéric		DOC
62	Date	Date		Gazeau, Frédéric		PP_start incubation
63	Photosynthetic production of total organic matter	tPP	µg/l/day	Gazeau, Frédéric		24h
64	Photosynthetic production of dissolved organic matter	dPP	µg/l/day	Gazeau, Frédéric		24h
65	Photosynthetic production of particulate organic matter	pPP	µg/l/h	Gazeau, Frédéric		above_2microns
66	Photosynthetic production of particulate organic matter, standard deviation	pPP std dev	±	Gazeau, Frédéric		above_2microns
67	Photosynthetic production of particulate organic matter	pPP	µg/l/h	Gazeau, Frédéric		below_2microns
68	Photosynthetic production of particulate organic matter, standard deviation	pPP std dev	±	Gazeau, Frédéric		below_2microns
69	Photosynthetic production of dissolved organic matter	dPP	µg/l/h	Gazeau, Frédéric
70	Photosynthetic production of dissolved organic matter, standard deviation	dPP std dev	±	Gazeau, Frédéric
71	Photosynthetic production of particulate organic matter	pPP	µg/l/h	Gazeau, Frédéric
72	Photosynthetic production of particulate organic matter, standard deviation	pPP std dev	±	Gazeau, Frédéric
73	Photosynthetic production of total organic matter	tPP	µg/l/h	Gazeau, Frédéric
74	Photosynthetic production of total organic matter, standard deviation	tPP std dev	±	Gazeau, Frédéric
75	Extracellular release	Extrac rel	%	Gazeau, Frédéric
76	Extracellular release, standard deviation	Extrac rel std dev	±	Gazeau, Frédéric
77	δ13C, dissolved organic carbon	δ13C DOC	‰ PDB	Gazeau, Frédéric
78	Suspended particulate matter	SPM	mg/l	Gazeau, Frédéric
79	Prokaryotes, heterotroph	Prok het	#/ml	Gazeau, Frédéric
80	Nanoflagellates, heterotrophic	HNF	#/ml	Gazeau, Frédéric
81	Nanoeukaryotes	NEuk	#/ml	Gazeau, Frédéric
82	Picoeukaryotes	PEuk	#/ml	Gazeau, Frédéric
83	Synechococcus	Synechococcus	#/ml	Gazeau, Frédéric
84	Chlorophyll c3	Chl c3	µg/l	Gazeau, Frédéric
85	Chlorophyll c1+c2	Chl c1+c2	µg/l	Gazeau, Frédéric
86	Peridinin	Perid	µg/l	Gazeau, Frédéric
87	Phaeophorbide a	Phaeopho a	µg/l	Gazeau, Frédéric
88	19-Butanoyloxyfucoxanthin	But-fuco	µg/l	Gazeau, Frédéric
89	Fucoxanthin	Fuco	µg/l	Gazeau, Frédéric
90	Neoxanthin	Neo	µg/l	Gazeau, Frédéric
91	Prasinoxanthin	Pras	µg/l	Gazeau, Frédéric
92	Violaxanthin	Viola	µg/l	Gazeau, Frédéric
93	19-Hexanoyloxyfucoxanthin	Hex-fuco	µg/l	Gazeau, Frédéric
94	Diadinoxanthin	Diadino	µg/l	Gazeau, Frédéric
95	Antheraxanthin	Anthera	µg/l	Gazeau, Frédéric
96	Alloxanthin	Allo	µg/l	Gazeau, Frédéric
97	Diatoxanthin	Diato	µg/l	Gazeau, Frédéric
98	Zeaxanthin	Zea	µg/l	Gazeau, Frédéric
99	Lutein	Lut	µg/l	Gazeau, Frédéric
100	Bacteriochlorophyll a	BChl a	µg/l	Gazeau, Frédéric
101	Chlorophyll b	Chl b	µg/l	Gazeau, Frédéric
102	Chlorophyll b	Chl b	µg/l	Gazeau, Frédéric		total
103	Divinyl chlorophyll a	DV chl a	µg/l	Gazeau, Frédéric
104	Chlorophyll a	Chl a	µg/l	Gazeau, Frédéric
105	Chlorophyll a, total	TChl a	µg/l	Gazeau, Frédéric
106	Phaeophytin a	Phaeophytin a	µg/l	Gazeau, Frédéric		sum
107	Carotene	Carotene	µg/l	Gazeau, Frédéric		sum
108	Iron, dissolved	Fe diss	nmol/l	Gazeau, Frédéric
109	Aluminium, dissolved	Al diss	nmol/l	Gazeau, Frédéric
110	Carbon, organic, particulate	POC	µmol/l	Gazeau, Frédéric
111	δ13C, particulate organic carbon	δ13C POC	‰ PDB	Gazeau, Frédéric
112	Transparent exopolymer particles	TEP	#/ml	Gazeau, Frédéric
113	Transparent exopolymer particles	TEP	µm²/l	Gazeau, Frédéric
114	Transparent exopolymer particles per carbon biomass	TEP C	µg/l	Gazeau, Frédéric
115	Date	Date		Gazeau, Frédéric		optics_measurements
116	Fluorescence, chlorophyll	F chl	µg/l	Gazeau, Frédéric
117	Fluorescence, chlorophyll, standard deviation	Fluores chl std dev	±	Gazeau, Frédéric
118	Fluorescence, dissolved organic matter	fDOM	ppb (QSE)	Gazeau, Frédéric
119	Fluorescence, dissolved organic matter, standard deviation	fDOM std dev	±	Gazeau, Frédéric
120	Nitrogen fixation rate	N2 fix	nmol/l/day	Gazeau, Frédéric
121	Primary production of carbon	PP C	µg/l/day	Gazeau, Frédéric		13C
122	Aspartic acid and Asparagine	AsX	nmol/l	Gazeau, Frédéric
123	Glutamic acid	Glu	nmol/l	Gazeau, Frédéric
124	Serine	Ser	nmol/l	Gazeau, Frédéric
125	Glycine	Gly	nmol/l	Gazeau, Frédéric
126	Threonine	Thr	nmol/l	Gazeau, Frédéric
127	Arginine	Arg	nmol/l	Gazeau, Frédéric
128	Alanine	Ala	nmol/l	Gazeau, Frédéric
129	gamma-Aminobutyric acid	g-ABA	nmol/l	Gazeau, Frédéric
130	Tyrosine	Tyr	nmol/l	Gazeau, Frédéric
131	Valine	Val	nmol/l	Gazeau, Frédéric
132	Isoleucine	Ile	nmol/l	Gazeau, Frédéric
133	Phenylalanine	Phe	nmol/l	Gazeau, Frédéric
134	Leucine	Leu	nmol/l	Gazeau, Frédéric
135	Amino acids	AA	nmol/l	Gazeau, Frédéric
136	Amino acid, hydrolysable as carbon	THAA-C	µmol/l	Gazeau, Frédéric
137	Amino acid, hydrolysable as nitrogen	THAA-N	µmol/l	Gazeau, Frédéric
138	Fucose	Fuc	µg/l	Gazeau, Frédéric
139	Fucose, standard deviation	Fuc std dev	±	Gazeau, Frédéric
140	Rhamnose	Rha	µg/l	Gazeau, Frédéric
141	Rhamnose, standard deviation	Rha std dev	±	Gazeau, Frédéric
142	Galactosamine	GalN	µg/l	Gazeau, Frédéric
143	Galactosamine, standard deviation	GalN std dev	±	Gazeau, Frédéric
144	Arabinose	Ara	µg/l	Gazeau, Frédéric
145	Arabinose, standard deviation	Ara std dev	±	Gazeau, Frédéric
146	Glucosamine	GlcN	µg/l	Gazeau, Frédéric
147	Glucosamine, standard deviation	GlcN std dev	±	Gazeau, Frédéric
148	Galactose	Gal	µg/l	Gazeau, Frédéric
149	Galactose, standard deviation	Gal std dev	±	Gazeau, Frédéric
150	Glucose	Glc	µg/l	Gazeau, Frédéric
151	Glucose, standard deviation	Glc std dev	±	Gazeau, Frédéric
152	Mannose/Xylose	Man/Xyl	µg/l	Gazeau, Frédéric
153	Mannose/Xylose, standard deviation	Man/Xyl std dev	±	Gazeau, Frédéric
154	Gluconic acid	GlucAc	µg/l	Gazeau, Frédéric
155	Gluconic acid, standard deviation	GlucAc std dev	±	Gazeau, Frédéric
156	Muramic acid	Mur	µg/l	Gazeau, Frédéric
157	Muramic acid, standard deviation	Mur std dev	±	Gazeau, Frédéric
158	Galacturonic acid	GalA	µg/l	Gazeau, Frédéric
159	Galacturonic acid, standard deviation	GalA std dev	±	Gazeau, Frédéric
160	Glucuronic acid	GlcA	µg/l	Gazeau, Frédéric
161	Glucuronic acid, standard deviation	GlcA std dev	±	Gazeau, Frédéric
162	Carbohydrates, total hydrolyzable	THCHO	nmol/l	Gazeau, Frédéric
163	Carbohydrates, total hydrolyzable	THCHO	µg/l	Gazeau, Frédéric
164	Carbohydrates, total hydrolyzable, standard error	THCHO std e	±	Gazeau, Frédéric
165	Carbohydrates, total hydrolyzable	THCHO	nmol/l	Gazeau, Frédéric		in carbon
166	Diatoms	Diatoms	#/l	Gazeau, Frédéric		Pente
167	Diatoms	Diatoms	#/l	Gazeau, Frédéric		Centric
168	Dinoflagellates	Dinofl	#/l	Gazeau, Frédéric
169	Flagellates, autotrophic	Flag auto	#/l	Gazeau, Frédéric
170	Ciliates	Ciliates	#/l	Gazeau, Frédéric
171	Ciliates, mixotrophic	Ciliates mixo	#/l	Gazeau, Frédéric
172	Ciliates, heterotrophic	Ciliates het	#/l	Gazeau, Frédéric
173	Total sediment, flux	Sed flux	mg/m²/day	Gazeau, Frédéric
174	Organic matter, flux	OM flux	mg/m²/day	Gazeau, Frédéric
175	Carbon, organic, flux	TOC flux	mg/m²/day	Gazeau, Frédéric
176	Lithogenic material	Litho	%	Gazeau, Frédéric
177	Calcium carbonate	CaCO3	%	Gazeau, Frédéric
178	Opal particles	Opal	%	Gazeau, Frédéric
179	Organic matter	OM	%	Gazeau, Frédéric
180	Copepoda	Copepoda	#	Gazeau, Frédéric
181	Crustacea	Crustacea	#	Gazeau, Frédéric
182	Mollusca	Mollusca	#	Gazeau, Frédéric
183	Harosa	Harosa	#	Gazeau, Frédéric
184	Cnidaria	Cnidaria	#	Gazeau, Frédéric
185	Chaetognatha	Chaetognatha	#	Gazeau, Frédéric
186	Appendicularia	Appendic	#	Gazeau, Frédéric
187	Annelida	Annelida	#	Gazeau, Frédéric
188	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
189	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
190	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
191	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
192	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
193	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
194	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
195	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
196	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

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17025 data points

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