Citation:

PANGAEA.941416

Name: Seawater carbonate chemistry and performance and oxidative status in a tolerant burrowing clam
Published: 2021
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Animalia; Benthic animals; Benthos; Bottles or small containers/Aquaria (<20 L); Coast and continental shelf; Growth/Morphology; Laboratory experiment; Mollusca; North Pacific; Other studied parameter or process; Panopea generosa; Respiration; Single species; Temperate

Always quote citation above when using data! You can download the citation in several formats below.

RIS Citation BibTeX Citation Text Citation Facebook Twitter

Abstract:

Whereas low levels of thermal stress, irradiance, and dietary restriction can have beneficial effects for many taxa, stress acclimation remains understudied in marine invertebrates, despite being threatened by climate change stressors such as ocean acidification. To test for life-stage and stress-intensity dependence in eliciting enhanced tolerance under subsequent stress encounters, we initially conditioned pediveliger Pacific geoduck (Panopea generosa) larvae to (i) ambient and moderately elevated pCO2 (920 µatm and 2800 µatm, respectively) for 110 days, (ii) secondarily applied a 7-day exposure to ambient, moderate, and severely elevated pCO2 (750 µatm, 2800 µatm, and 4900 µatm, respectively), followed by 7 days in ambient conditions, and (iii) implemented a 7-day third exposure to ambient (970 µatm) and moderate pCO2 (3000 µatm). Initial conditioning to moderate pCO2 stress followed by second and third exposure to severe and moderate pCO2 stress increased respiration rate, organic biomass, and shell size suggesting a stress-intensity-dependent effect on energetics. Additionally, stress-acclimated clams had lower antioxidant capacity compared to clams under ambient conditions, supporting the hypothesis that stress over postlarval-to-juvenile development affects oxidative status later in life. Time series and stress intensity-specific approaches can reveal life-stages and magnitudes of exposure, respectively, that may elicit beneficial phenotypic variation.

Keyword(s):

Animalia; Benthic animals; Benthos; Bottles or small containers/Aquaria (<20 L); Coast and continental shelf; Growth/Morphology; Laboratory experiment; Mollusca; North Pacific; Other studied parameter or process; Panopea generosa; Respiration; Single species; Temperate

Related to:

Gurr, Samuel J; Trigg, Shelly A; Vadopalas, Brent; Roberts, Steven B; Putnam, H M (2021): Repeat exposure to hypercapnic seawater modifies growth and oxidative status in a tolerant burrowing clam. Journal of Experimental Biology, 224(13), https://doi.org/10.1242/jeb.233932

Original version:

Gurr, Samuel J; Trigg, Shelly A; Vadopalas, Brent; Roberts, Steven B; Putnam, H M (2020): Repeat exposure to hypercapnic seawater modifies performance and oxidative status in a tolerant burrowing clam. Zenodo, https://doi.org/10.5281/zenodo.3903019

Further details:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2021): seacarb: seawater carbonate chemistry with R. R package version 3.2.16. https://cran.r-project.org/web/packages/seacarb/index.html

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Coverage:

Date/Time Start: 2019-07-04T00:00:00 * Date/Time End: 2019-08-14T00:00:00

Comment:

In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2022-2-24.

'EH' and 'AH' represents the ambient pCO2 history ('AH') or moderately-elevated pCO2 history ('EH') during the acclimation period prior to the repeat exposures. Characters after the 'history (AH or EH) represent pCO2 levels during the second exposure (A = ambient, M = moderately-elevated, and S = severely-elevated) and the third exposure (A = ambient, M = moderately-elevated). For instance, a row as 'EHSA' means moderately-elevated pCO2 acclimation, second exposure to severely-elevated pCO2, and third exposure to ambient pCO2. If an exposure is not given then that measurement was taken before the treatment was relevant.

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Type	Type		Gurr, Samuel J		study
2	Species	Species		Gurr, Samuel J
3	Registration number of species	Reg spec no		Gurr, Samuel J		WoRMS Aphia ID
4	Uniform resource locator/link to reference	URL ref		Gurr, Samuel J
5	DATE/TIME	Date/Time		Gurr, Samuel J		Geocode
6	Identification	ID		Gurr, Samuel J		Tank
7	Treatment	Treat		Gurr, Samuel J		ID.initial
8	Identification	ID		Gurr, Samuel J		head.tank.INITIAL
9	Identification	ID		Gurr, Samuel J		tray.ID.INTIAL
10	Treatment	Treat		Gurr, Samuel J		ID.SUBSQ
11	Identification	ID		Gurr, Samuel J		head.tank.SUBSQ
12	Identification	ID		Gurr, Samuel J		tray.ID.SUBSQ
13	Run	Run		Gurr, Samuel J
14	Position	Position		Gurr, Samuel J		SDR
15	Treatment	Treat		Gurr, Samuel J		Sw.Condition
16	Shell length	Shell l	mm	Gurr, Samuel J
17	Shell length	Shell l	mm	Gurr, Samuel J		sum
18	Individuals	Ind	#	Gurr, Samuel J		count
19	Respiration rate, oxygen, per individual	Resp O2/ind	mg/#/h	Gurr, Samuel J
20	Identification	ID		Gurr, Samuel J
21	Day of experiment	DOE	day	Gurr, Samuel J
22	Ash free dry mass	afdm	mg	Gurr, Samuel J
23	Protein/dry weight ratio	Protein/DW	µg/mg	Gurr, Samuel J
24	Copper reducing equivalents, per protein	CRE/prot	µmol/mg	Gurr, Samuel J
25	Salinity	Sal		Gurr, Samuel J		Initial exposure
26	Salinity, standard deviation	Sal std dev	±	Gurr, Samuel J		Initial exposure
27	Temperature, water	Temp	°C	Gurr, Samuel J		Initial exposure
28	Temperature, water, standard deviation	Temp std dev	±	Gurr, Samuel J		Initial exposure
29	pH	pH		Gurr, Samuel J		Initial exposure, total scale
30	pH, standard deviation	pH std dev	±	Gurr, Samuel J		Initial exposure, total scale
31	Alkalinity, total	AT	µmol/kg	Gurr, Samuel J		Initial exposure
32	Alkalinity, total, standard deviation	AT std dev	±	Gurr, Samuel J		Initial exposure
33	Salinity	Sal		Gurr, Samuel J		Secondary exposure
34	Salinity, standard deviation	Sal std dev	±	Gurr, Samuel J		Secondary exposure
35	Temperature, water	Temp	°C	Gurr, Samuel J		Secondary exposure
36	Temperature, water, standard deviation	Temp std dev	±	Gurr, Samuel J		Secondary exposure
37	pH	pH		Gurr, Samuel J		Secondary exposure, total scale
38	pH, standard deviation	pH std dev	±	Gurr, Samuel J		Secondary exposure, total scale
39	Alkalinity, total	AT	µmol/kg	Gurr, Samuel J		Secondary exposure
40	Alkalinity, total, standard deviation	AT std dev	±	Gurr, Samuel J		Secondary exposure
41	Salinity	Sal		Gurr, Samuel J		Tertiary exposure
42	Salinity, standard deviation	Sal std dev	±	Gurr, Samuel J		Tertiary exposure
43	Temperature, water	Temp	°C	Gurr, Samuel J		Tertiary exposure
44	Temperature, water, standard deviation	Temp std dev	±	Gurr, Samuel J		Tertiary exposure
45	pH	pH		Gurr, Samuel J		Tertiary exposure, total scale
46	pH, standard deviation	pH std dev	±	Gurr, Samuel J		Tertiary exposure, total scale
47	Alkalinity, total	AT	µmol/kg	Gurr, Samuel J		Tertiary exposure
48	Alkalinity, total, standard deviation	AT std dev	±	Gurr, Samuel J		Tertiary exposure
49	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
50	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	Initial exposure
51	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	Initial exposure
52	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	Initial exposure
53	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	Initial exposure
54	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	Initial exposure
55	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	Initial exposure
56	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	Initial exposure
57	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	Initial exposure
58	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	Secondary exposure, total scale
59	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	Secondary exposure, total scale
60	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	Secondary exposure, total scale
61	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	Secondary exposure, total scale
62	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	Secondary exposure, total scale
63	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	Secondary exposure, total scale
64	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	Secondary exposure, total scale
65	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	Secondary exposure, total scale
66	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	Tertiary exposure
67	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	Tertiary exposure
68	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	Tertiary exposure
69	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	Tertiary exposure
70	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	Tertiary exposure
71	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	Tertiary exposure
72	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	Tertiary exposure
73	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	Tertiary exposure

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

39178 data points

Download Data

Download dataset as tab-delimited text — use the following character encoding:

View dataset as HTML (shows only first 2000 rows)