Dede Bledina bdede@mpi-bremen.de 0000-0001-5244-5499 Meyerdierks Anke ameyerdi@mpi-bremen.de 0000-0002-8834-5446 2021 Niche differentiation of sulfur-oxidizing bacteria (SUP05) in submarine hydrothermal plumes dataset https://doi.org/10.1594/PANGAEA.939214 2021-12-09T12:36:40 Chemistry and microbial cell numbers of two bathy- (Brothers volcano; BrV-cone and northwest caldera; NWC) and a mesopelagic (Macauley volcano; McV) plumes on the Kermadec intra-oceanic arc in the South Pacific Ocean. The microbial cell numbers were determined using Catalyzed reporter deposition fluorescence in situ hybridization (CARD-FISH). Chemical measurements of DFe, DOC, TDN, PO4, NOx and SPE-DOC in the plumes are given. Dede Bledina bdede@mpi-bremen.de 0000-0001-5244-5499 Hansen Christian T chansen@marum.de 0000-0003-4943-0231 Neuholz René rene.neuholz@uni-oldenburg.de 0000-0002-0774-8359 Schnetger Bernhard bernhard.schnetger@uol.de 0000-0003-1638-3977 Kleint Charlotte c.kleint@jacobs-university.de 0000-0001-8594-3304 Walker Sharon L sharon.l.walker@noaa.gov Bach Wolfgang wbach@uni-bremen.de https://www.marum.de/en/Wolfgang-Bach.html 0000-0002-3099-7142 Amann Rudolf 0000-0002-0846-7372 Meyerdierks Anke ameyerdi@mpi-bremen.de 0000-0002-8834-5446 2022 Niche differentiation of sulfur-oxidizing bacteria (SUP05) in submarine hydrothermal plumes journal article The ISME Journal https://doi.org/10.1038/s41396-022-01195-x Specifications for CARD-FISH probes other https://download.pangaea.de/reference/111180/attachments/dede_2021_ISME_PangaeaSubmission_probe.txt 178.77712 -178.43373 -35.25835 -28.2596 -179.83714833333332 -32.27900833333333 2016-12-24T22:01:00 2017-01-16T10:13:00 195.0 1750.0 uncoded table Bundesministerium für Bildung und Forschung, Bonn BMBF https://www.bmbf.de https://doi.org/10.13039/501100002347 03G0253 Geosphere-Biosphere Interactions SO253_1-1 -28.2596 -179.07518 -2039.0 2016-12-24T22:01:00 South Pacific Ocean SO253 HYDROTHERMADEC https://doi.org/10.2312/cr_so253 Koschinsky, Andrea 2016-12-22 2017-01-21 Noumea, New Caledonia Auckland, New Zealand 20170003 hdl:10013/epic.48493.d026 hdl:10013/epic.46850.d046 Sonne_2 https://uol.de/icbm/forschungsplattformen-schiffe/sonne DBBE 9633927 CTD/Rosette CTD-RO CTD http://vocab.nerc.ac.uk/collection/L05/current/130/ CTD & XBT Water samplers SO253_4-1 -30.20932 -178.43373 -575.0 2016-12-26T05:28:00 South Pacific Ocean SO253 HYDROTHERMADEC https://doi.org/10.2312/cr_so253 Koschinsky, Andrea 2016-12-22 2017-01-21 Noumea, New Caledonia Auckland, New Zealand 20170003 hdl:10013/epic.48493.d026 hdl:10013/epic.46850.d046 Sonne_2 https://uol.de/icbm/forschungsplattformen-schiffe/sonne DBBE 9633927 CTD/Rosette CTD-RO CTD http://vocab.nerc.ac.uk/collection/L05/current/130/ CTD & XBT Water samplers SO253_10-1 -30.21465 -178.44357 -461.0 2016-12-27T10:02:00 South Pacific Ocean SO253 HYDROTHERMADEC https://doi.org/10.2312/cr_so253 Koschinsky, Andrea 2016-12-22 2017-01-21 Noumea, New Caledonia Auckland, New Zealand 20170003 hdl:10013/epic.48493.d026 hdl:10013/epic.46850.d046 Sonne_2 https://uol.de/icbm/forschungsplattformen-schiffe/sonne DBBE 9633927 CTD/Rosette CTD-RO CTD http://vocab.nerc.ac.uk/collection/L05/current/130/ CTD & XBT Water samplers SO253_49-1 -34.8627 179.08982 -1760.0 2017-01-08T08:08:00 South Pacific Ocean SO253 HYDROTHERMADEC https://doi.org/10.2312/cr_so253 Koschinsky, Andrea 2016-12-22 2017-01-21 Noumea, New Caledonia Auckland, New Zealand 20170003 hdl:10013/epic.48493.d026 hdl:10013/epic.46850.d046 Sonne_2 https://uol.de/icbm/forschungsplattformen-schiffe/sonne DBBE 9633927 CTD/Rosette CTD-RO CTD http://vocab.nerc.ac.uk/collection/L05/current/130/ CTD & XBT Water samplers SO253_54-1 -34.86943 179.06265 -1805.0 2017-01-09T11:12:00 South Pacific Ocean SO253 HYDROTHERMADEC https://doi.org/10.2312/cr_so253 Koschinsky, Andrea 2016-12-22 2017-01-21 Noumea, New Caledonia Auckland, New Zealand 20170003 hdl:10013/epic.48493.d026 hdl:10013/epic.46850.d046 Sonne_2 https://uol.de/icbm/forschungsplattformen-schiffe/sonne DBBE 9633927 CTD/Rosette CTD-RO CTD http://vocab.nerc.ac.uk/collection/L05/current/130/ CTD & XBT Water samplers SO253_79-1 -35.25835 178.77712 -3151.0 2017-01-16T10:13:00 South Pacific Ocean SO253 HYDROTHERMADEC https://doi.org/10.2312/cr_so253 Koschinsky, Andrea 2016-12-22 2017-01-21 Noumea, New Caledonia Auckland, New Zealand 20170003 hdl:10013/epic.48493.d026 hdl:10013/epic.46850.d046 Sonne_2 https://uol.de/icbm/forschungsplattformen-schiffe/sonne DBBE 9633927 CTD/Rosette CTD-RO CTD http://vocab.nerc.ac.uk/collection/L05/current/130/ CTD & XBT Water samplers 526 CC-BY-4.0 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/ Event label Event Dede Bledina bdede@mpi-bremen.de 0000-0001-5244-5499 Event Latitude of event Latitude Dede Bledina bdede@mpi-bremen.de 0000-0001-5244-5499 Latitude Longitude of event Longitude Dede Bledina bdede@mpi-bremen.de 0000-0001-5244-5499 Longitude Date/Time of event Date/Time Dede Bledina bdede@mpi-bremen.de 0000-0001-5244-5499 Date/Time DEPTH, water Depth water m depth http://purl.obolibrary.org/obo/PATO_0001595 water http://purl.obolibrary.org/obo/CHEBI_15377 Length L http://dbpedia.org/resource/Length Dede Bledina bdede@mpi-bremen.de 0000-0001-5244-5499 Depth water [m] Sample ID Sample ID Dede Bledina bdede@mpi-bremen.de 0000-0001-5244-5499 Sample ID Origin Origin Dede Bledina bdede@mpi-bremen.de 0000-0001-5244-5499 Source Origin (Source) Type Type type Dede Bledina bdede@mpi-bremen.de 0000-0001-5244-5499 Cast type Type (Cast type) Location Location location Dede Bledina bdede@mpi-bremen.de 0000-0001-5244-5499 Plume area Location (Plume area) Turbidity (Nephelometric turbidity unit) Turbidity NTU https://en.wikipedia.org/wiki/Turbidity Turbidity http://dbpedia.org/resource/Turbidity CTD, SEA-BIRD SBE 9 plus CTD & XBT Sea-Bird SBE 9plus CTD http://vocab.nerc.ac.uk/collection/L22/current/TOOL1508/ Dede Bledina bdede@mpi-bremen.de 0000-0001-5244-5499 Turbidity [NTU] (CTD, SEA-BIRD SBE 9 plus) Temperature, water Temp °C Temperature Θ http://dbpedia.org/resource/Temperature water http://purl.obolibrary.org/obo/CHEBI_15377 CTD, SEA-BIRD SBE 9 plus CTD & XBT Sea-Bird SBE 9plus CTD http://vocab.nerc.ac.uk/collection/L22/current/TOOL1508/ Dede Bledina bdede@mpi-bremen.de 0000-0001-5244-5499 Temp [°C] (CTD, SEA-BIRD SBE 9 plus) pH pH Dede Bledina bdede@mpi-bremen.de 0000-0001-5244-5499 pH Oxygen O2 µmol/kg oxygen O https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:25805 Molar Concentration Dede Bledina bdede@mpi-bremen.de 0000-0001-5244-5499 O2 [µmol/kg] Iron, dissolved Fe diss nmol/l dissolved http://purl.obolibrary.org/obo/PATO_0001986 Molar Concentration High Resolution Sector Field Inductively Coupled Plasma Mass Spectrometry HR-SF-ICP-MS Dede Bledina bdede@mpi-bremen.de 0000-0001-5244-5499 Fe diss [nmol/l] (High Resolution Sector Field ...) Carbon, organic, dissolved DOC µmol/l carbon C https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:27594 organic dissolved http://purl.obolibrary.org/obo/PATO_0001986 Molar Concentration High temperature catalytic combustion Dede Bledina bdede@mpi-bremen.de 0000-0001-5244-5499 DOC [µmol/l] (High temperature catalytic co...) Nitrogen, total dissolved TDN µmol/l nitrogen N https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:25555 Molar Concentration High temperature catalytic combustion Dede Bledina bdede@mpi-bremen.de 0000-0001-5244-5499 TDN [µmol/l] (High temperature catalytic co...) Phosphate [PO4]3- µmol/l phosphate http://purl.obolibrary.org/obo/CHEBI_26020 Molar Concentration Colorimetric analysis Dede Bledina bdede@mpi-bremen.de 0000-0001-5244-5499 [PO4]3- [µmol/l] (Colorimetric analysis) Nitrogen oxide NOx µmol/l nitrogen oxide http://purl.obolibrary.org/obo/CHEBI_35196 Molar Concentration Colorimetric analysis Dede Bledina bdede@mpi-bremen.de 0000-0001-5244-5499 NOx [µmol/l] (Colorimetric analysis) Hydrogen sulfide H2S µmol/l hydrogen sulfide http://purl.obolibrary.org/obo/CHEBI_16136 Molar Concentration Modeled Dede Bledina bdede@mpi-bremen.de 0000-0001-5244-5499 H2S [µmol/l] (Modeled) Carbon, organic, dissolved, extracted DOC extr µmol/l carbon C https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:27594 organic dissolved http://purl.obolibrary.org/obo/PATO_0001986 extracted Molar Concentration Solid-phase extracted (Dittmer etal, 2008) SPE https://doi.org/10.4319/lom.2008.6.230 Dede Bledina bdede@mpi-bremen.de 0000-0001-5244-5499 solid-phase extractable dissolved organic carbon DOC extr [µmol/l] (solid-phase extractable disso...) Analysis Analysis Dede Bledina bdede@mpi-bremen.de 0000-0001-5244-5499 CARD FISH Analysis (CARD FISH) Analysis Analysis Dede Bledina bdede@mpi-bremen.de 0000-0001-5244-5499 Metagenome Analysis (Metagenome) Analysis Analysis Dede Bledina bdede@mpi-bremen.de 0000-0001-5244-5499 Metatranscriptome Analysis (Metatranscriptome) Prokaryotic cell abundance P cell abund #/cm**3 Dede Bledina bdede@mpi-bremen.de 0000-0001-5244-5499 P cell abund [#/cm**3] Bacteria, targed with EUB338(I-III) oligonucleotide FISH-probe EUB338 I-III % https://doi.org/10.1016/S0723-2020(99)80053-8 Bacteria https://www.marinespecies.org/aphia.php?p=taxdetails&id=6 Dimensionless Ratio ψ Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH) https://doi.org/10.1128/AEM.68.6.3094-3101.2002 Dede Bledina bdede@mpi-bremen.de 0000-0001-5244-5499 EUB338 I-III [%] (Catalysed reporter deposition...) Archaea, targed with ARCH915 oligonucleotide FISH-probe ARCH915 % http://aem.asm.org/content/60/4/1232.full.pdf Archaea https://www.marinespecies.org/aphia.php?p=taxdetails&id=8 Dimensionless Ratio ψ Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH) https://doi.org/10.1128/AEM.68.6.3094-3101.2002 Dede Bledina bdede@mpi-bremen.de 0000-0001-5244-5499 ARCH915 [%] (Catalysed reporter deposition...) Gammaproteobacteria, targeted with Gam42a oligonucleotide FISH-probe Gam42a % https://doi.org/10.1016/S0723-2020(11)80121-9 Gammaproteobacteria https://www.marinespecies.org/aphia.php?p=taxdetails&id=393018 Dimensionless Ratio ψ Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH) https://doi.org/10.1128/AEM.68.6.3094-3101.2002 Dede Bledina bdede@mpi-bremen.de 0000-0001-5244-5499 Gam42a [%] (Catalysed reporter deposition...) Gammaproteobacteria, targed with the SUP05_1241 oligonucleotide FISH-probe SUP05_1241 SUP05 cluster % Gammaproteobacteria https://www.marinespecies.org/aphia.php?p=taxdetails&id=393018 Dimensionless Ratio ψ Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH) https://doi.org/10.1128/AEM.68.6.3094-3101.2002 Dede Bledina bdede@mpi-bremen.de 0000-0001-5244-5499 SUP05_1241 SUP05 cluster [%] (Catalysed reporter deposition...) CurationLevelC Enhanced curation https://wiki.pangaea.de/wiki/Curation_levels citable Candidatus Thioglobus intraoceanic arc metabolic flexibility Metagenome metatranscriptome microbial ecology volcanic arc author20120 author30038 author30670 author34884 author51751 author58740 author75681 author85106 author85916 award920 basis5064 campaign44349 curlevel30 event2835922 event2835924 event2835928 event2835959 event2835963 event2835985 funder276 geocode1599 geocode1600 geocode1601 geocode1619 geocode8128 journal7763 license21 method10923 method12784 method13908 method14147 method14148 method14149 method6800 method7511 param102656 param129028 param129029 param129077 param136089 param149278 param16065 param160675 param160676 param1720 param2267 param24607 param48494 param52477 param6205 param717 param758 param764 param766 param79702 param80103 pi85916 ref111180 ref111627 term1052338 term1061861 term1069111 term1073131 term1073484 term1073493 term1073771 term1074698 term21005 term2299371 term2606205 term2663532 term2664318 term38477 term38494 term38548 term43794 term43863 term43972 term43980 term44030 term44340 term44419 term49506 term67626 term68002 term68026 term69786 term69787 term69788 term69789 term69790 term69791 topotype11