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Elovaara, Samu; Eronen-Rasimus, Eeva; Asmala, Eero; Tamelander, Tobias; Kaartokallio, Hermanni (2021): Monitoring of the growth phase of phytoplankton cultures in part 2 (dissolved organic matter consumption) of the microcosm experiment, Gulf of Finland, Baltic Sea [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.937717, In: Elovaara, S et al. (2021): Phytoplankton and bacterial production, 14C-transfer and optical characteristics of dissolved organic matter (DOM) from a microcosm experiment, Gulf of Finland, Baltic Sea [dataset bundled publication]. PANGAEA, https://doi.org/10.1594/PANGAEA.937723

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Abstract:
The data were collected from an experiment using phytoplankton cultures (Apocalathium malmogiense and Rhodomonas marina). The aim of the experiment was to study carbon cycling among phytoplankton and bacteria, and the effects on the dissolved organic matter (DOM) pool. Measured variables include phytoplankton and bacterial abundance, primary production, bacterial production and respiration, 14C-transfer from phytoplankton to DOM and bacteria, concentrations of particulate and dissolved organic carbon, nitrate, phosphate and chlorophyll a, and optical characteristics of dissolved organic matter. The experiment was conducted at Tvärminne Zoological Station, Hanko, Finland with non-axenic unialgal phytoplankton cultures and bacteria originating from the Baltic Sea. The experiment was conducted between Dec. 2017 and Apr. 2018. The experiment consisted of two parts, the DOM release experiment (part 1) and the DOM consumption experiment (part 2). Separate triplicate batch cultures of both phytoplankton species were grown for each experiment. In the DOM release experiment the cultures were grown for over 4 months and three day-long incubations (key point incubations, KPI's) were initiated on three occasions; the first KPI at early exponential growth phase and the second and third KPI's when the phytoplankton had grown more abundant. During each KPI and aliquot of the culture was inoculated with freshly collected sea water bacteria, and bacterial community composition was measured. This aliquot was then divided into two further aliquots; one was incubated with radioisotopes for productivity (primary and bacterial production) and 14C-flow analyses (production line) and one filtered through 0.8 µm for analysis of DOM optical properties. During the KPI's measurements were taken at 0, 4, 8 and 12 h. Nutrient concentrations (measured from non-filtered and 0.8 µm filtered samples) and concentration of dissolved organic carbon were measured only at 0 and 12 h. Concentrations of particulate organic carbon and nitrogen and chlorophyll a were measured only once for each KPI at the beginning of the incubation. In the DOM consumption experiments the cultures were grown to high abundance, after which the phytoplankton and most of the bacteria were filtered out. The filtrate was then inoculated with freshly collected sea water bacteria, after which it was incubated for 7 days. Bacterial abundance, production, respiration, and community composition, and concentration and optical properties of DOM were measured daily. The experimental design is explained in figure 1 of the associated publication.
This data table contains measurements collected during monitoring of the growth of phytoplankton batch cultures in part 2 of the experiment (DOM consumption experiment), i.e., before the initiation of the incubation. These phytoplankton cultures were used in the incubation of the DOM consumption experiment. The measured variables are phytoplankton abundance and abundance of A. malmogiense cells with lower chlorophyll a fluorescence.
Keyword(s):
14C; Bacteria; bacterial production; Baltic Sea; CDOM; DOM; FDOM; Laboratory experiment; Laboratory strains; Phytoplankton; primary production
Supplement to:
Elovaara, Samu; Eronen-Rasimus, Eeva; Asmala, Eero; Tamelander, Tobias; Kaartokallio, Hermanni (2021): Contrasting patterns of carbon cycling and dissolved organic matter processing in two phytoplankton–bacteria communities. Biogeosciences, 18(24), 6589-6616, https://doi.org/10.5194/bg-18-6589-2021
Coverage:
Latitude: 59.856521 * Longitude: 23.258936
Date/Time Start: 2018-01-31T00:00:00 * Date/Time End: 2018-03-27T00:00:00
Event(s):
Amalmogiense_SHTV-2_FINMARI  * Latitude: 59.856521 * Longitude: 23.258936 * Date/Time: 2002-01-01T00:00:00 * Location: Tvärminne, Storfjärden, Finland * Method/Device: LIMNOS water sampler (LIMNOSWS) * Comment: Collection site of Apocalathium malmogiense culture SHTV-2 of FINMARI culture collection/SYKE Marine Research Centre. Coordinates are approximates as exact sampling location is not recorded.
Rmarina_Crypto08-A2_FINMARI  * Latitude: 59.856521 * Longitude: 23.258936 * Date/Time: 2008-01-01T00:00:00 * Location: Tvärminne, Storfjärden, Finland * Method/Device: LIMNOS water sampler (LIMNOSWS) * Comment: Collection site of Rhodomonas marina culture Crypto08-A2 of FINMARI culture collection/SYKE Marine Research Centre. Coordinates are approximates as exact sampling location is not recorded.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
Event labelEventElovaara, Samu
Type of studyStudy typeElovaara, Samu
Temperature, waterTemp°CElovaara, Samu
SpeciesSpeciesElovaara, SamuFlow cytometry Accuri C6
Uniform resource locator/link to referenceURL refElovaara, SamuWoRMS AphiaID
ReplicateReplElovaara, Samu
DATE/TIMEDate/TimeElovaara, SamuGeocode – experiment
MicrophytoplanktonMicrophytopl#/lElovaara, SamuFlow cytometry Accuri C6
MicrophytoplanktonMicrophytopl#/lElovaara, SamuFlow cytometry Accuri C6low chlorophyll a cells
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
217 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Event

Study type

Temp [°C]

Species

URL ref
(WoRMS AphiaID)

Repl

Date/Time
(experiment)

Microphytopl [#/l]

Microphytopl [#/l]
(low chlorophyll a cells)
Amalmogiense_SHTV-2_FINMARI laboratory experiment4Apocalathium malmogiensemarinespecies.orgA2018-03-1100
Amalmogiense_SHTV-2_FINMARIlaboratory experiment4Apocalathium malmogiensemarinespecies.orgB2018-03-116359102432253
Amalmogiense_SHTV-2_FINMARIlaboratory experiment4Apocalathium malmogiensemarinespecies.orgC2018-03-11594166730000
Amalmogiense_SHTV-2_FINMARIlaboratory experiment4Apocalathium malmogiensemarinespecies.orgA2018-02-137100000183333
Amalmogiense_SHTV-2_FINMARIlaboratory experiment4Apocalathium malmogiensemarinespecies.orgB2018-02-137638436244300
Amalmogiense_SHTV-2_FINMARIlaboratory experiment4Apocalathium malmogiensemarinespecies.orgC2018-02-138099369465300
Amalmogiense_SHTV-2_FINMARIlaboratory experiment4Apocalathium malmogiensemarinespecies.orgD2018-02-1311089259726172
Amalmogiense_SHTV-2_FINMARIlaboratory experiment4Apocalathium malmogiensemarinespecies.orgA2018-03-024668737289855
Amalmogiense_SHTV-2_FINMARIlaboratory experiment4Apocalathium malmogiensemarinespecies.orgB2018-03-023182752195072
Amalmogiense_SHTV-2_FINMARIlaboratory experiment4Apocalathium malmogiensemarinespecies.orgC2018-03-023689024182927
Amalmogiense_SHTV-2_FINMARIlaboratory experiment4Apocalathium malmogiensemarinespecies.orgA2018-03-2278310101898955
Amalmogiense_SHTV-2_FINMARIlaboratory experiment4Apocalathium malmogiensemarinespecies.orgB2018-03-227710548596893
Amalmogiense_SHTV-2_FINMARIlaboratory experiment4Apocalathium malmogiensemarinespecies.orgC2018-03-228774671756579
Amalmogiense_SHTV-2_FINMARIlaboratory experiment4Apocalathium malmogiensemarinespecies.orgA2018-03-2762397891982657
Amalmogiense_SHTV-2_FINMARIlaboratory experiment4Apocalathium malmogiensemarinespecies.orgB2018-03-2790322581037489
Amalmogiense_SHTV-2_FINMARIlaboratory experiment4Apocalathium malmogiensemarinespecies.orgC2018-03-2789132341016652
Rmarina_Crypto08-A2_FINMARI laboratory experiment4Rhodomonas marinamarinespecies.orgA2018-01-31204016220
Rmarina_Crypto08-A2_FINMARIlaboratory experiment4Rhodomonas marinamarinespecies.orgB2018-01-31264936170
Rmarina_Crypto08-A2_FINMARIlaboratory experiment4Rhodomonas marinamarinespecies.orgC2018-01-31229604710
Rmarina_Crypto08-A2_FINMARIlaboratory experiment4Rhodomonas marinamarinespecies.orgD2018-01-31249027900
Rmarina_Crypto08-A2_FINMARIlaboratory experiment4Rhodomonas marinamarinespecies.orgA2018-02-13652461660
Rmarina_Crypto08-A2_FINMARIlaboratory experiment4Rhodomonas marinamarinespecies.orgB2018-02-13620946470
Rmarina_Crypto08-A2_FINMARIlaboratory experiment4Rhodomonas marinamarinespecies.orgC2018-02-13640455620
Rmarina_Crypto08-A2_FINMARIlaboratory experiment4Rhodomonas marinamarinespecies.orgD2018-02-13614274450
Rmarina_Crypto08-A2_FINMARIlaboratory experiment4Rhodomonas marinamarinespecies.orgA2018-02-23847979800
Rmarina_Crypto08-A2_FINMARIlaboratory experiment4Rhodomonas marinamarinespecies.orgB2018-02-23787073170
Rmarina_Crypto08-A2_FINMARIlaboratory experiment4Rhodomonas marinamarinespecies.orgC2018-02-23853990230
Rmarina_Crypto08-A2_FINMARIlaboratory experiment4Rhodomonas marinamarinespecies.orgD2018-02-23678345500
Rmarina_Crypto08-A2_FINMARIlaboratory experiment4Rhodomonas marinamarinespecies.orgA2018-03-02901664930
Rmarina_Crypto08-A2_FINMARIlaboratory experiment4Rhodomonas marinamarinespecies.orgB2018-03-02789446720
Rmarina_Crypto08-A2_FINMARIlaboratory experiment4Rhodomonas marinamarinespecies.orgC2018-03-021078177970