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Donham, E M; Hamilton, Scott L; Price, Nichole N; Kram, Susan; Kelly, Emily; Johnson, Maggie Dorothy; Neu, Alexander T; Smith, Jennifer E (2021): Seawater carbonate chemistry and kelp forest community structure,net community calcification [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.934044

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Abstract:
Ocean acidification (OA) is likely to differentially affect the biology and physiology of calcifying and non-calcifying taxa, thereby potentially altering key ecological interactions (e.g., facilitation, competition, predation) in ways that are difficult to predict from single-species experiments. We used a two-factor experimental design to investigate how multispecies benthic assemblages in southern California kelp forests respond to OA and grazing by the purple sea urchin, Strongylocentrotus purpuratus. Settlement tiles accrued natural mixed assemblages of algae and invertebrates in a kelp forest off San Diego, CA for one year before being exposed to OA and grazing in a laboratory experiment for two months. Space occupying organisms were identified and pooled into six functional groups: calcified invertebrates, non-calcified invertebrates, calcified algae, fleshy algae, sediment, and bare space for subsequent analyses of community structure. Interestingly, communities that developed on separate tile racks were unique, despite being deployed close in space, and further changes in community structure in response to OA and grazing depended on this initial community state. On Rack 1, we found significant effects of both pCO2 and grazing with elevated pCO2 increasing cover of fleshy algae, but sea urchin grazers decreasing cover of fleshy algae. On Rack 2, we found a 35% higher percent cover of sediment on tiles reared in ambient pCO2 but observed 27% higher cover of bare space in the high pCO2 conditions. On Rack 3, we found an average of 45% lower percent cover of calcified sessile invertebrates at ambient pCO2 than in high pCO2 treatments on Rack 3. Net community calcification was 137% lower in elevated pCO2 treatments. Kelp sporophyte densities on tiles without urchins were 74% higher than on tiles with urchins and kelp densities were highest in the elevated pCO2 treatment. Urchin growth and grazing rates were 49% and 126% higher under ambient than high pCO2 conditions. This study highlights consistent negative impacts of OA on community processes such as calcification and grazing rates, even though impacts on community structure were highly context-dependent.
Keyword(s):
Behaviour; Benthos; Calcification/Dissolution; Coast and continental shelf; Community composition and diversity; Entire community; Laboratory experiment; Mesocosm or benthocosm; North Pacific; Other; Rocky-shore community; Temperate
Supplement to:
Donham, E M; Hamilton, Scott L; Price, Nichole N; Kram, Susan; Kelly, Emily; Johnson, Maggie Dorothy; Neu, Alexander T; Smith, Jennifer E (2021): Experimental assessment of the impacts of ocean acidification and urchin grazing on benthic kelp forest assemblages. Journal of Experimental Marine Biology and Ecology, 540, 151548, https://doi.org/10.1016/j.jembe.2021.151548
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2021): seacarb: seawater carbonate chemistry with R. R package version 3.2.16. https://cran.r-project.org/web/packages/seacarb/index.html
Coverage:
Latitude: 32.854100 * Longitude: -117.281200
Event(s):
Mias_Reef * Latitude: 32.854100 * Longitude: -117.281200 * Method/Device: Experiment (EXP)
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2021-07-26.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
TypeTypeDonham, E Mstudy
IdentificationIDDonham, E MTile
TreatmentTreatDonham, E M
TreatmentTreatDonham, E MGrazer presence
IdentificationIDDonham, E MTile Rack
IndividualsInd#Donham, E MKelp sporophyte density
Dry massDry mgDonham, E MKelp
Calcification rateCalc rate%/dayDonham, E Mchange in tile buoyant wt
Grazing rateGraze rateg/g/dayDonham, E MSea urchin (g kelp removed per day per g urchin dry wt)
10 Calcification rateCalc rate%/dayDonham, E MSea urchin
11 CoverageCov%Donham, E MFinal Calcified Inverts
12 CoverageCov%Donham, E MFinal Non-Calcified Inverts
13 CoverageCov%Donham, E MFinal Calcified Algae
14 CoverageCov%Donham, E MFinal Fleshy Algae
15 CoverageCov%Donham, E MFinal Sediment
16 CoverageCov%Donham, E MFinal Bare
17 CoverageCov%Donham, E MInitial Calcified Inverts
18 CoverageCov%Donham, E MInitial Non-Calcified Inverts
19 CoverageCov%Donham, E MInitial Calcified Algae
20 CoverageCov%Donham, E MInitial Fleshy Algae
21 CoverageCov%Donham, E MInitial Sediment
22 CoverageCov%Donham, E MInitial Bare
23 pHpHDonham, E MPotentiometrictotal scale
24 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmDonham, E MCalculated using CO2SYS
25 Bicarbonate ion[HCO3]-µmol/kgDonham, E MCalculated using CO2SYS
26 Carbonate ion[CO3]2-µmol/kgDonham, E MCalculated using CO2SYS
27 Carbon dioxideCO2µmol/kgDonham, E MCalculated using CO2SYS
28 Calcite saturation stateOmega CalDonham, E MCalculated using CO2SYS
29 Aragonite saturation stateOmega ArgDonham, E MCalculated using CO2SYS
30 Temperature, waterTemp°CDonham, E M
31 SalinitySalDonham, E M
32 Alkalinity, totalATµmol/kgDonham, E MPotentiometric titration
33 Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
34 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
35 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
36 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
37 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
38 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
39 Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
40 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
41 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
1598 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Type
(study)

ID
(Tile)

Treat

Treat
(Grazer presence)

ID
(Tile Rack)

Ind [#]
(Kelp sporophyte density)

Dry m [g]
(Kelp)

Calc rate [%/day]
(change in tile buoyant wt)

Graze rate [g/g/day]
(Sea urchin (g kelp removed pe...)
10 
Calc rate [%/day]
(Sea urchin)
11 
Cov [%]
(Final Calcified Inverts)
12 
Cov [%]
(Final Non-Calcified Inverts)
13 
Cov [%]
(Final Calcified Algae)
14 
Cov [%]
(Final Fleshy Algae)
15 
Cov [%]
(Final Sediment)
16 
Cov [%]
(Final Bare)
17 
Cov [%]
(Initial Calcified Inverts)
18 
Cov [%]
(Initial Non-Calcified Inverts)
19 
Cov [%]
(Initial Calcified Algae)
20 
Cov [%]
(Initial Fleshy Algae)
21 
Cov [%]
(Initial Sediment)
22 
Cov [%]
(Initial Bare)
23 
pH
(total scale, Potentiometric)
24 
pCO2water_SST_wet [µatm]
(Calculated using CO2SYS)
25 
[HCO3]- [µmol/kg]
(Calculated using CO2SYS)
26 
[CO3]2- [µmol/kg]
(Calculated using CO2SYS)
27 
CO2 [µmol/kg]
(Calculated using CO2SYS)
28 
Omega Cal
(Calculated using CO2SYS)
29 
Omega Arg
(Calculated using CO2SYS)
30 
Temp [°C]
31 
Sal
32 
AT [µmol/kg]
(Potentiometric titration)
33 
CSC flag
(Calculated using seacarb afte...)
34 
CO2 [µmol/kg]
(Calculated using seacarb afte...)
35 
fCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
36 
pCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
37 
[HCO3]- [µmol/kg]
(Calculated using seacarb afte...)
38 
[CO3]2- [µmol/kg]
(Calculated using seacarb afte...)
39 
DIC [µmol/kg]
(Calculated using seacarb afte...)
40 
Omega Arg
(Calculated using seacarb afte...)
41 
Omega Cal
(Calculated using seacarb afte...)
laboratoryA1Ambient pCO2NoA10.020.0111.112.025.0516.1655.5610.1012.502.274.5518.1862.500.008.00443.651917.10129.2117.673.111.9813.1533.612238.122121817.67442.05443.691918.56128.512064.741.973.09
laboratoryA10High pCO2NoA100.58-0.0611.341.030.0024.7450.5212.3714.890.009.5734.0440.431.067.531569.382113.6350.2762.711.210.7713.0333.622238.590572857.761439.911445.272119.4347.892225.080.731.15
laboratoryA11High pCO2YesA00.00-0.1015.1511.114.0421.2129.2919.1921.516.457.5337.6324.732.157.531569.382113.6350.2762.711.210.7713.0333.622238.590572857.761439.911445.272119.4347.892225.080.731.15
laboratoryA12High pCO2YesA50.17-0.09-0.170.5947.964.082.0413.2725.517.1446.433.572.3815.4832.140.007.531569.382113.6350.2762.711.210.7713.0333.622238.590572857.761439.911445.272119.4347.892225.080.731.15
laboratoryA13High pCO2YesA00.00-0.04-0.350.794.082.041.0224.4932.6535.718.643.706.1728.4053.090.007.531569.382113.6350.2762.711.210.7713.0333.622238.590572857.761439.911445.272119.4347.892225.080.731.15
laboratoryA2Ambient pCO2NoA00.00-0.0116.331.021.0225.5120.4135.718.970.000.0033.3356.411.288.00443.651917.10129.2117.673.111.9813.1533.612238.122121817.67442.05443.691918.56128.512064.741.973.09
laboratoryA3Ambient pCO2NoA40.26-0.039.185.100.0016.3335.7133.673.531.180.0043.5350.591.188.00443.651917.10129.2117.673.111.9813.1533.612238.122121817.67442.05443.691918.56128.512064.741.973.09
laboratoryA4Ambient pCO2YesA10.02-0.020.181.2020.418.1610.2016.3320.4124.495.061.276.3355.7031.650.008.00443.651917.10129.2117.673.111.9813.1533.612238.122121817.67442.05443.691918.56128.512064.741.973.09
laboratoryA5Ambient pCO2YesA00.000.000.741.7217.352.048.1615.3141.8415.310.001.300.0061.0437.660.008.00443.651917.10129.2117.673.111.9813.1533.612238.122121817.67442.05443.691918.56128.512064.741.973.09
laboratoryA6Ambient pCO2YesA40.02-0.040.190.9619.3910.205.109.1818.3737.7627.061.184.7122.3544.710.008.00443.651917.10129.2117.673.111.9813.1533.612238.122121817.67442.05443.691918.56128.512064.741.973.09
laboratoryA7Ambient pCO2YesA50.22-0.021.311.478.160.0012.249.1838.7831.637.140.005.9545.2438.103.578.00443.651917.10129.2117.673.111.9813.1533.612238.122121817.67442.05443.691918.56128.512064.741.973.09
laboratoryA8High pCO2NoA20.01-0.0314.292.045.1024.4952.042.049.590.002.7413.7073.970.007.531569.382113.6350.2762.711.210.7713.0333.622238.590572857.761439.911445.272119.4347.892225.080.731.15
laboratoryA9High pCO2NoA71.27-0.0315.464.121.0323.7145.3610.3113.411.221.2228.0550.006.107.531569.382113.6350.2762.711.210.7713.0333.622238.590572857.761439.911445.272119.4347.892225.080.731.15
laboratoryB1Ambient pCO2NoB00.00-0.044.085.104.0810.2030.6145.924.351.455.8014.4965.228.708.00443.651917.10129.2117.673.111.9813.1533.612238.122121817.67442.05443.691918.56128.512064.741.973.09
laboratoryB10High pCO2NoB171.94-0.0713.401.034.1213.4015.4652.587.590.008.8630.3849.373.807.531569.382113.6350.2762.711.210.7713.0333.622238.590572857.761439.911445.272119.4347.892225.080.731.15
laboratoryB11High pCO2NoB60.08-0.109.002.004.008.008.0069.003.570.0016.6739.2928.5711.907.531569.382113.6350.2762.711.210.7713.0333.622238.590572857.761439.911445.272119.4347.892225.080.731.15
laboratoryB12High pCO2YesB00.00-0.09-2.590.392.042.044.088.1629.5954.088.450.007.0430.9950.702.827.531569.382113.6350.2762.711.210.7713.0333.622238.590572857.761439.911445.272119.4347.892225.080.731.15
laboratoryB13High pCO2YesB10.28-0.09-0.830.9814.298.162.0416.3315.3143.885.190.001.3033.7753.256.497.531569.382113.6350.2762.711.210.7713.0333.622238.590572857.761439.911445.272119.4347.892225.080.731.15
laboratoryB14High pCO2YesB10.00-0.140.890.8610.201.020.0013.2713.2762.245.190.003.9023.3864.942.607.531569.382113.6350.2762.711.210.7713.0333.622238.590572857.761439.911445.272119.4347.892225.080.731.15
laboratoryB2Ambient pCO2NoB20.07-0.0410.102.023.0310.1030.3044.446.063.033.0351.5230.306.068.00443.651917.10129.2117.673.111.9813.1533.612238.122121817.67442.05443.691918.56128.512064.741.973.09
laboratoryB3Ambient pCO2NoB00.00-0.0811.227.142.0413.2721.4344.905.560.006.9429.1754.174.178.00443.651917.10129.2117.673.111.9813.1533.612238.122121817.67442.05443.691918.56128.512064.741.973.09
laboratoryB4Ambient pCO2NoB00.00-0.099.280.006.1914.4344.3325.775.412.702.7028.3855.415.418.00443.651917.10129.2117.673.111.9813.1533.612238.122121817.67442.05443.691918.56128.512064.741.973.09
laboratoryB5Ambient pCO2YesB20.80-0.011.200.2221.431.023.0618.3732.6523.4717.650.000.0035.2947.060.008.00443.651917.10129.2117.673.111.9813.1533.612238.122121817.67442.05443.691918.56128.512064.741.973.09
laboratoryB6Ambient pCO2YesB00.00-0.050.261.8012.121.013.0310.1044.4429.293.901.306.4936.3644.167.798.00443.651917.10129.2117.673.111.9813.1533.612238.122121817.67442.05443.691918.56128.512064.741.973.09
laboratoryB7Ambient pCO2YesB00.00-0.060.492.539.183.061.0211.2246.9428.571.431.430.0050.0047.140.008.00443.651917.10129.2117.673.111.9813.1533.612238.122121817.67442.05443.691918.56128.512064.741.973.09
laboratoryB8High pCO2NoB00.00-0.1019.390.003.0615.3124.4937.765.560.004.1737.5051.391.397.531569.382113.6350.2762.711.210.7713.0333.622238.590572857.761439.911445.272119.4347.892225.080.731.15
laboratoryB9High pCO2NoB10.02-0.077.142.041.0213.2738.7837.761.300.003.9040.2651.952.607.531569.382113.6350.2762.711.210.7713.0333.622238.590572857.761439.911445.272119.4347.892225.080.731.15
laboratoryC1Ambient pCO2NoC130.280.0124.494.088.1612.2423.4727.5517.071.222.4442.6836.590.008.00443.651917.10129.2117.673.111.9813.1533.612238.122121817.67442.05443.691918.56128.512064.741.973.09
laboratoryC10High pCO2YesC30.10-0.09-2.380.5831.6317.353.067.1414.2926.5329.8511.940.0022.3935.820.007.531569.382113.6350.2762.711.210.7713.0333.622238.590572857.761439.911445.272119.4347.892225.080.731.15
laboratoryC11High pCO2YesC00.00-0.07-0.750.339.181.024.0821.4325.5138.782.6012.992.6050.6528.572.607.531569.382113.6350.2762.711.210.7713.0333.622238.590572857.761439.911445.272119.4347.892225.080.731.15
laboratoryC12High pCO2YesC00.00-0.11-0.370.494.001.002.009.0013.0071.003.950.003.9531.5855.265.267.531569.382113.6350.2762.711.210.7713.0333.622238.590572857.761439.911445.272119.4347.892225.080.731.15
laboratoryC13High pCO2YesC00.00-0.130.141.719.188.166.128.1615.3153.0615.156.066.0639.3930.303.037.531569.382113.6350.2762.711.210.7713.0333.622238.590572857.761439.911445.272119.4347.892225.080.731.15
laboratoryC2Ambient pCO2NoC40.42-0.0119.394.087.145.108.1656.1211.271.417.0425.3554.930.008.00443.651917.10129.2117.673.111.9813.1533.612238.122121817.67442.05443.691918.56128.512064.741.973.09
laboratoryC3Ambient pCO2NoC10.01-0.0330.610.004.0813.2715.3136.7321.790.006.4125.6443.592.568.00443.651917.10129.2117.673.111.9813.1533.612238.122121817.67442.05443.691918.56128.512064.741.973.09
laboratoryC4Ambient pCO2YesC10.06-0.060.780.4718.004.008.005.009.0056.009.722.785.5630.5643.068.338.00443.651917.10129.2117.673.111.9813.1533.612238.122121817.67442.05443.691918.56128.512064.741.973.09
laboratoryC5Ambient pCO2YesC00.00-0.070.681.1230.610.006.121.0218.3743.8828.992.905.8036.2326.090.008.00443.651917.10129.2117.673.111.9813.1533.612238.122121817.67442.05443.691918.56128.512064.741.973.09
laboratoryC6Ambient pCO2YesC00.00-0.070.963.1122.221.015.058.0811.1152.5321.430.004.2954.2920.000.008.00443.651917.10129.2117.673.111.9813.1533.612238.122121817.67442.05443.691918.56128.512064.741.973.09
laboratoryC7High pCO2NoC60.26-0.0815.3112.240.0010.2018.3743.8813.757.501.2546.2530.001.257.531569.382113.6350.2762.711.210.7713.0333.622238.590572857.761439.911445.272119.4347.892225.080.731.15
laboratoryC8High pCO2NoC00.00-0.0815.155.0510.1019.1915.1535.3513.853.086.1535.3838.463.087.531569.382113.6350.2762.711.210.7713.0333.622238.590572857.761439.911445.272119.4347.892225.080.731.15
laboratoryC9High pCO2NoC70.04-0.1114.293.062.043.0613.2764.2913.853.086.1535.3838.463.087.531569.382113.6350.2762.711.210.7713.0333.622238.590572857.761439.911445.272119.4347.892225.080.731.15