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Ulrich, Robert N; Guillermic, Maxence; Campbell, Julia; Hakim, Abbas; Han, Rachel; Singh, Shayleen; Stewart, Justin D; Román-Palacios, Cristian; Carroll, Hannah M; De Corte, Ilian; Gilmore, Rosaleen E; Doss, Whitney; Tripati, Aradhna K; Ries, Justin B; Eagle, Robert A (2021): Seawater carbonate chemistry and elemental ratios in biogenic marine calcium carbonates [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.933051

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Abstract:
Elemental ratios in biogenic marine calcium carbonates are widely used in geobiology, environmental science, and paleoenvironmental reconstructions. It is generally accepted that the elemental abundance of biogenic marine carbonates reflects a combination of the abundance of that ion in seawater, the physical properties of seawater, the mineralogy of the biomineral, and the pathways and mechanisms of biomineralization. Here we report measurements of a suite of nine elemental ratios (Li/Ca, B/Ca, Na/Ca, Mg/Ca, Zn/Ca, Sr/Ca, Cd/Ca, Ba/Ca, and U/Ca) in 18 species of benthic marine invertebrates spanning a range of biogenic carbonate polymorph mineralogies (low-Mg calcite, high-Mg calcite, aragonite, mixed mineralogy) and of phyla (including Mollusca, Echinodermata, Arthropoda, Annelida, Cnidaria, Chlorophyta, and Rhodophyta) cultured at a single temperature (25°C) and a range of pCO2 treatments (ca. 409, 606, 903, and 2856 ppm). This dataset was used to explore various controls over elemental partitioning in biogenic marine carbonates, including species-level and biomineralization-pathway-level controls, the influence of internal pH regulation compared to external pH changes, and biocalcification responses to changes in seawater carbonate chemistry. The dataset also enables exploration of broad scale phylogenetic patterns of elemental partitioning across calcifying species, exhibiting high phylogenetic signals estimated from both uni- and multivariate analyses of the elemental ratio data (univariate: lambda = 0–0.889; multivariate: lambda = 0.895–0.99). Comparing partial R2 values returned from non-phylogenetic and phylogenetic regression analyses echo the importance of and show that phylogeny explains the elemental ratio data 1.4–59 times better than mineralogy in five out of nine of the elements analyzed. Therefore, the strong associations between biomineral elemental chemistry and species relatedness suggests mechanistic controls over element incorporation rooted in the evolution of biomineralization mechanisms.
Keyword(s):
Animalia; Annelida; Arbacia punctulata; Argopecten irradians; Arthropoda; Benthic animals; Benthos; Biomass/Abundance/Elemental composition; Callinectes sapidus; Chlorophyta; Cnidaria; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Crassostrea virginica; Crepidula fornicata; Echinodermata; Eucidaris tribuloides; Halimeda incrassata; Homarus americanus; Hydroides crucigera; Laboratory experiment; Littorina littorea; Macroalgae; Mercenaria mercenaria; Mollusca; Mya arenaria; Mytilus edulis; Neogoniolithon spectabile; North Atlantic; Oculina arbuscula; Penaeus plebejus; Plantae; Rhodophyta; Single species; Strombus alatus; Temperate; Urosalpinx cinerea
Supplement to:
Ulrich, Robert N; Guillermic, Maxence; Campbell, Julia; Hakim, Abbas; Han, Rachel; Singh, Shayleen; Stewart, Justin D; Román-Palacios, Cristian; Carroll, Hannah M; De Corte, Ilian; Gilmore, Rosaleen E; Doss, Whitney; Tripati, Aradhna K; Ries, Justin B; Eagle, Robert A (2021): Patterns of Element Incorporation in Calcium Carbonate Biominerals Recapitulate Phylogeny for a Diverse Range of Marine Calcifiers. Frontiers in Earth Science, 9, https://doi.org/10.3389/feart.2021.641760
Related to:
Liu, Yiwei; Sutton, Jill N; Ries, Justin B; Eagle, Robert A (2020): Seawater carbonate chemistry and calcification rate of 10 investigated species of marine calcifiers. PANGAEA, https://doi.org/10.1594/PANGAEA.918128
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2021): seacarb: seawater carbonate chemistry with R. R package version 3.2.16. https://cran.r-project.org/web/packages/seacarb/index.html
Ries, Justin B; Cohen, Anne L; McCorkle, Daniel C (2009): Seawater carbonate chemistry and biological processes during experiments with calcifiing organisms, 2009. PANGAEA, https://doi.org/10.1594/PANGAEA.733947
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2021-06-24.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1TypeTypeUlrich, Robert Nstudy
2SpeciesSpeciesUlrich, Robert N
3Registration number of speciesReg spec noUlrich, Robert N
4Uniform resource locator/link to referenceURL refUlrich, Robert NWoRMS Aphia ID
5OrganismsOrgUlrich, Robert N
6IdentificationIDUlrich, Robert NRies
7MaterialMaterialUlrich, Robert NCarbonate
8PhylumPhylumUlrich, Robert N
9Carbon dioxide, partial pressurepCO2ppmvUlrich, Robert N
10InstrumentInstrumentUlrich, Robert N
11Lithium/Calcium ratioLi/Caµmol/molUlrich, Robert N
12Boron/Calcium ratioB/Caµmol/molUlrich, Robert N
13Magnesium/Calcium ratioMg/Cammol/molUlrich, Robert N
14Zinc/Calcium ratioZn/Caµmol/molUlrich, Robert N
15Strontium/Calcium ratioSr/Cammol/molUlrich, Robert N
16Cadmium/Calcium ratioCd/Caµmol/molUlrich, Robert N
17Barium/Calcium ratioBa/Caµmol/molUlrich, Robert N
18Uranium/Calcium ratioU/Canmol/molUlrich, Robert N
19Sodium/Calcium ratioNa/Cammol/molUlrich, Robert N
20Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmUlrich, Robert N
21Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Ulrich, Robert N
22SalinitySalUlrich, Robert N
23Salinity, standard deviationSal std dev±Ulrich, Robert N
24Temperature, waterTemp°CUlrich, Robert N
25Temperature, water, standard deviationTemp std dev±Ulrich, Robert N
26Alkalinity, totalATµmol/kgUlrich, Robert N
27Alkalinity, total, standard deviationAT std dev±Ulrich, Robert N
28pHpHUlrich, Robert NNBS scale
29pH, standard deviationpH std dev±Ulrich, Robert NNBS scale
30Carbon, inorganic, dissolvedDICµmol/kgUlrich, Robert N
31Carbon, inorganic, dissolved, standard deviationDIC std dev±Ulrich, Robert N
32Carbonate ion[CO3]2-µmol/kgUlrich, Robert N
33Carbonate ion, standard deviation[CO3]2- std dev±Ulrich, Robert N
34Bicarbonate ion[HCO3]-µmol/kgUlrich, Robert N
35Bicarbonate ion, standard deviation[HCO3]- std dev±Ulrich, Robert N
36Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmUlrich, Robert N
37Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Ulrich, Robert N
38Aragonite saturation stateOmega ArgUlrich, Robert N
39Aragonite saturation state, standard deviationOmega Arg std dev±Ulrich, Robert N
40Calcite saturation stateOmega CalUlrich, Robert N
41Apparent partition coefficient, lithiumKLiUlrich, Robert N
42Apparent partition coefficient, boronKBUlrich, Robert N
43Apparent partition coefficient, magnesiumKMgUlrich, Robert N
44Apparent partition coefficient, zincKZnUlrich, Robert N
45Apparent partition coefficient, strontiumKSrUlrich, Robert N
46Apparent partition coefficient, cadmiumKCdUlrich, Robert N
47Apparent partition coefficient, bariumKBaUlrich, Robert N
48Apparent partition coefficient, uraniumKUUlrich, Robert N
49Apparent partition coefficient, sodiumKNaUlrich, Robert N
50Apparent partition coefficient, boron to calcite incorporation x1000KD x 1000Ulrich, Robert N
51Apparent partition coefficient, boron to aragonite incorporation x10001000xKD (aragonite)Ulrich, Robert N
52Apparent partition coefficient, boron to aragonite incorporation x10001000xKD (aragonite)Ulrich, Robert N
53Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
54pHpHYang, YanCalculated using seacarb after Nisumaa et al. (2010)total scale
55Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
56Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
57Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
58Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
59Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
60Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
61Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
62Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
22651 data points

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