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Pegado, Maria; Santos, Catarina P; Pimentel, Marta; Cyrne, Ricardo; Sampaio, Eduardo; Temporão, Ana; Röckner, Janina; Diniz, Mário; Rosa, Rui (2020): Seawater carbonate chemistry and enzymatic antioxidant defense, protein repair and removal of temperate shark (Scyliorhinus canicula) [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.929859

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Abstract:
Ocean acidification is a consequence of chemical changes driven mainly by a continuous uptake of carbon dioxide, resulting in pH decrease. This phenomenon represents an additional threat to marine life, with expected effects ranging from changes in behavioral responses and calcification rates to the potential promotion of oxidative stress. To unravel the impacts of ocean acidification on the antioxidant system of sharks, we performed a long-term exposure (9 months, since early embryogenesis) to high CO2 conditions (pCO2 900 μatm) on a temperate shark (Scyliorhinus canicula). The following biomarkers were measured: enzymatic antioxidant defense (superoxide dismutase, catalase and glutathione peroxidase), protein repair and removal (heat shock proteins and ubiquitin), and oxidative damage on lipids (malondialdehyde) and DNA (8-hydroxy-2′-deoxyguanosine). Changes in the antioxidant enzyme defense were restricted to an increase in catalase activity in the muscle, an enzyme that plays a major role in oxidative stress mitigation. On the other hand, no evidence of oxidative damage was found, indicating that the observed increase in catalase activity may be enough to neutralize the effects of potentially higher reactive oxygen species. These results further indicate that these sharks' antioxidant system can successfully cope with the levels of carbon dioxide projected for the end of the century. Nonetheless, the interaction between ocean acidification and the rise in temperature expected to occur in a near future may disturb their antioxidant capacity, requiring further investigation.
Keyword(s):
Animalia; Benthos; Chordata; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Laboratory experiment; Nekton; North Atlantic; Other metabolic rates; Other studied parameter or process; Scyliorhinus canicula; Single species; Temperate
Supplement to:
Pegado, Maria; Santos, Catarina P; Pimentel, Marta; Cyrne, Ricardo; Sampaio, Eduardo; Temporão, Ana; Röckner, Janina; Diniz, Mário; Rosa, Rui (2020): Lack of oxidative damage on temperate juvenile catsharks after a long-term ocean acidification exposure. Marine Biology, 167(11), https://doi.org/10.1007/s00227-020-03770-2
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2021): seacarb: seawater carbonate chemistry with R. R package version 3.2.16. https://cran.r-project.org/web/packages/seacarb/index.html
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2021-03-23.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1TypeTypePegado, Mariastudy
2SpeciesSpeciesPegado, Maria
3Registration number of speciesReg spec noPegado, Maria
4Uniform resource locator/link to referenceURL refPegado, MariaWoRMS Aphia ID
5IdentificationIDPegado, MariaIndividual
6ExperimentExpPegado, Maria
7TreatmentTreatPegado, Maria
8ReplicateReplPegado, Maria
9OrganOrganPegado, Maria
10Catalase activity, per protein massCAT/protnmol/min/mgPegado, Maria
11Total glutathione peroxidases activity, per protein massGPxTOT/protnmol/min/mgPegado, Maria
12UbiquitinUbµg/mgPegado, Maria
13DNA damage, per proteinDNA/protµg/mgPegado, Maria
14Lipid peroxidation, per wet massLPOnmol/mgPegado, Maria
15Superoxide dismutase activity, inhibition, per protein massSOD inhib/prot%/min/mgPegado, Maria
16Heat shock protein, per protein massHSP/protng/mgPegado, Maria
17Temperature, waterTemp°CPegado, Maria
18Temperature, water, standard deviationTemp std dev±Pegado, Maria
19pHpHPegado, MariaNBS scale
20pH, standard deviationpH std dev±Pegado, MariaNBS scale
21SalinitySalPegado, Maria
22Salinity, standard deviationSal std dev±Pegado, Maria
23Alkalinity, totalATµmol/kgPegado, Maria
24Alkalinity, total, standard deviationAT std dev±Pegado, Maria
25Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmPegado, MariaCalculated
26Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Pegado, MariaCalculated
27Bicarbonate ion[HCO3]-µmol/kgPegado, MariaCalculated
28Bicarbonate ion, standard deviation[HCO3]- std dev±Pegado, MariaCalculated
29Aragonite saturation stateOmega ArgPegado, MariaCalculated
30Aragonite saturation state, standard deviationOmega Arg std dev±Pegado, MariaCalculated
31Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
32pHpHYang, YanCalculated using seacarb after Nisumaa et al. (2010)total scale
33Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
34Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
35Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
36Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
37Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
38Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
39Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
40Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
29525 data points

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