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Di Giglio, Sarah; Agüera, Antonio; Pernet, Philippe; M'Zoudi, Saloua; Angulo-Preckler, Carlos; Avila, Conxita; Dubois, Philippe (2020): Seawater carbonate chemistry and acid-base physiology, skeleton properties, and metal contamination in two echinoderms [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.929722

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Abstract:
Antarctic surface waters are expected to be the first to experience severe ocean acidification (OA) with carbonate undersaturation and large decreases in pH forecasted before the end of this century. Due to the long stability in environmental conditions and the relatively low daily and seasonal variations to which they are exposed, Antarctic marine organisms, especially those with a supposedly poor machinery to eliminate CO2 and protons and with a heavily calcified skeleton like echinoderms, are hypothesized as highly vulnerable to these environmental shifts. The opportunities offered by the natural pH gradient generated by vent activities in Deception Island caldera, Western Antarctic Peninsula, were used to investigate for the first time the acid-base physiologies, the impact of OA on the skeleton and the impact of pH on metal accumulation in the Antarctic sea star Odontaster validus and sea urchin Sterechinus neumayeri. The two species were sampled in four stations within the caldera, two at pH (total scale) 8.0- 8.1 and two at reduced pH 7.8. Measured variables were pH, alkalinity, and dissolved inorganic carbon of the coelomic fluid; characteristic fracture force, stress and Young's modulus using Weibull statistics and Cd, Cu, Fe, Pb and Zn concentrations in the integument, gonads and digestive system. Recorded acid-base characteristics of both studied species fit in the general picture deduced from temperate and tropical sea stars and sea urchins but conditions and possibly confounding factors, principally food availability and quality, in the studied stations prevented definitive conclusions. Reduced seawater pH 7.8 and metals had almost no impact on the skeleton mechanical properties of the two investigated species despite very high Cd concentrations in O. validus integument. Reduced pH was correlated to increased contamination by most metals but this relation was weak. Translocation and caging experiments taking into account food parameters are proposed to better understand future processes linked to ocean acidification and metal contamination in Antarctic echinoderms.
Keyword(s):
Acid-base regulation; Animalia; Antarctic; Benthic animals; Benthos; CO2 vent; Coast and continental shelf; Echinodermata; Field observation; Growth/Morphology; Odontaster validus; Other metabolic rates; Other studied parameter or process; Polar; Single species; Sterechinus neumayeri
Supplement to:
Di Giglio, Sarah; Agüera, Antonio; Pernet, Philippe; M'Zoudi, Saloua; Angulo-Preckler, Carlos; Avila, Conxita; Dubois, Philippe (2021): Effects of ocean acidification on acid-base physiology, skeleton properties, and metal contamination in two echinoderms from vent sites in Deception Island, Antarctica. Science of the Total Environment, 765, 142669, https://doi.org/10.1016/j.scitotenv.2020.142669
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2021): seacarb: seawater carbonate chemistry with R. R package version 3.2.16. https://cran.r-project.org/web/packages/seacarb/index.html
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2021-03-23.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1TypeTypeDi Giglio, Sarahstudy
2SpeciesSpeciesDi Giglio, Sarah
3Registration number of speciesReg spec noDi Giglio, Sarah
4Uniform resource locator/link to referenceURL refDi Giglio, SarahWoRMS Aphia ID
5SiteSiteDi Giglio, Sarah
6Coelomic fluid, pHpH (cf)Di Giglio, Sarahtotal scale
7pH, standard deviationpH std dev±Di Giglio, SarahCoelomic fluid, total scale
8Coelomic fluid, alkalinityAT (cf)µmol/kgDi Giglio, Sarah
9Alkalinity, total, standard deviationAT std dev±Di Giglio, SarahCoelomic fluid
10Coelomic fluid, carbon, inorganic, dissolvedDIC (cf)mmol/lDi Giglio, Sarah
11Carbon, inorganic, dissolved, standard deviationDIC std dev±Di Giglio, SarahCoelomic fluid
12Coelomic fluid, partial pressure of carbon dioxidepCO2 (cf)µatmDi Giglio, Sarah
13Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Di Giglio, SarahCoelomic fluid
14Coelomic fluid, bicarbonate ion[HCO3]- (cf)µmol/kgDi Giglio, Sarah
15Bicarbonate ion, standard deviation[HCO3]- std dev±Di Giglio, SarahCoelomic fluid
16Coelomic fluid, carbonate ion[CO3]2- (cf)µmol/kgDi Giglio, Sarah
17Carbonate ion, standard deviation[CO3]2- std dev±Di Giglio, SarahCoelomic fluid
18Coelomic fluid, calcite saturation stateOmega Cal (cf)Di Giglio, Sarah
19Calcite saturation state, standard deviationOmega Cal std dev±Di Giglio, SarahCoelomic fluid
20Coelomic fluid, aragonite saturation stateOmega Arg (cf)Di Giglio, Sarah
21Aragonite saturation state, standard deviationOmega Arg std dev±Di Giglio, SarahCoelomic fluid
22Arm lengthALmmDi Giglio, Sarah
23Arm length, standard deviationAL std dev±Di Giglio, Sarah
24LengthlmmDi Giglio, SarahD test
25Length, standard deviationl std dev±Di Giglio, SarahD test
26LengthlmmDi Giglio, SarahH test
27Length, standard deviationl std dev±Di Giglio, SarahH test
28LengthlmmDi Giglio, Saraheffective
29Length, standard deviationl std dev±Di Giglio, Saraheffective
30HeighthmmDi Giglio, Sarah
31Height, standard deviationh std dev±Di Giglio, Sarah
32Second moment of areaI2m4Di Giglio, Sarah
33Second moment of area, standard deviationI2 std dev±Di Giglio, Sarah
34Characteristic stressSigma0MPaDi Giglio, Sarah
35Confidence intervalCIDi Giglio, Sarah
36Confidence intervalCIDi Giglio, Sarah
37Weibull modulusmDi Giglio, Sarah
38Confidence intervalCIDi Giglio, Sarah
39Confidence intervalCIDi Giglio, Sarah
40ForceFNDi Giglio, Sarahat fracture
41Confidence intervalCIDi Giglio, Sarah
42Confidence intervalCIDi Giglio, Sarah
43Young's modulusE mGPaDi Giglio, Sarahcharacteristic
44Confidence intervalCIDi Giglio, Sarah
45Confidence intervalCIDi Giglio, Sarah
46CadmiumCdmg/kgDi Giglio, SarahIntegument
47Cadmium, standard deviationCd std dev±Di Giglio, SarahIntegument
48CopperCuµg/gDi Giglio, SarahIntegument
49Copper, standard deviationCu std dev±Di Giglio, SarahIntegument
50IronFeµg/gDi Giglio, SarahIntegument
51Iron, standard deviationFe std dev±Di Giglio, SarahIntegument
52LeadPbmg/kgDi Giglio, SarahIntegument
53Lead, standard deviationPb std dev±Di Giglio, SarahIntegument
54ZincZnµg/gDi Giglio, SarahIntegument
55Zinc, standard deviationZn std dev±Di Giglio, SarahIntegument
56CadmiumCdmg/kgDi Giglio, SarahGonads
57Cadmium, standard deviationCd std dev±Di Giglio, SarahGonads
58CopperCuµg/gDi Giglio, SarahGonads
59Copper, standard deviationCu std dev±Di Giglio, SarahGonads
60IronFeµg/gDi Giglio, SarahGonads
61Iron, standard deviationFe std dev±Di Giglio, SarahGonads
62LeadPbmg/kgDi Giglio, SarahGonads
63Lead, standard deviationPb std dev±Di Giglio, SarahGonads
64ZincZnµg/gDi Giglio, SarahGonads
65Zinc, standard deviationZn std dev±Di Giglio, SarahGonads
66CadmiumCdmg/kgDi Giglio, SarahPyloric caeca of Odontaster validus, digestive tract of Sterechinus neumayeri
67Cadmium, standard deviationCd std dev±Di Giglio, SarahPyloric caeca of Odontaster validus, digestive tract of Sterechinus neumayeri
68CopperCuµg/gDi Giglio, SarahPyloric caeca of Odontaster validus, digestive tract of Sterechinus neumayeri
69Copper, standard deviationCu std dev±Di Giglio, SarahPyloric caeca of Odontaster validus, digestive tract of Sterechinus neumayeri
70IronFeµg/gDi Giglio, SarahPyloric caeca of Odontaster validus, digestive tract of Sterechinus neumayeri
71Iron, standard deviationFe std dev±Di Giglio, SarahPyloric caeca of Odontaster validus, digestive tract of Sterechinus neumayeri
72LeadPbmg/kgDi Giglio, SarahPyloric caeca of Odontaster validus, digestive tract of Sterechinus neumayeri
73Lead, standard deviationPb std dev±Di Giglio, SarahPyloric caeca of Odontaster validus, digestive tract of Sterechinus neumayeri
74ZincZnµg/gDi Giglio, SarahPyloric caeca of Odontaster validus, digestive tract of Sterechinus neumayeri
75Zinc, standard deviationZn std dev±Di Giglio, SarahPyloric caeca of Odontaster validus, digestive tract of Sterechinus neumayeri
76Temperature, waterTemp°CDi Giglio, Sarah
77Temperature, water, standard deviationTemp std dev±Di Giglio, Sarah
78SalinitySalDi Giglio, Sarah
79Salinity, standard deviationSal std dev±Di Giglio, Sarah
80pHpHDi Giglio, SarahPotentiometrictotal scale
81pH, standard deviationpH std dev±Di Giglio, SarahPotentiometrictotal scale
82Alkalinity, totalATµmol/kgDi Giglio, SarahPotentiometric titration
83Alkalinity, total, standard deviationAT std dev±Di Giglio, SarahPotentiometric titration
84Carbon, inorganic, dissolvedDICµmol/kgDi Giglio, Sarah
85Carbon, inorganic, dissolved, standard deviationDIC std dev±Di Giglio, Sarah
86Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmDi Giglio, SarahCalculated using CO2SYS
87Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Di Giglio, SarahCalculated using CO2SYS
88Bicarbonate ion[HCO3]-µmol/kgDi Giglio, SarahCalculated using CO2SYS
89Bicarbonate ion, standard deviation[HCO3]- std dev±Di Giglio, SarahCalculated using CO2SYS
90Carbonate ion[CO3]2-µmol/kgDi Giglio, SarahCalculated using CO2SYS
91Carbonate ion, standard deviation[CO3]2- std dev±Di Giglio, SarahCalculated using CO2SYS
92Calcite saturation stateOmega CalDi Giglio, SarahCalculated using CO2SYS
93Calcite saturation state, standard deviationOmega Cal std dev±Di Giglio, SarahCalculated using CO2SYS
94Aragonite saturation stateOmega ArgDi Giglio, SarahCalculated using CO2SYS
95Aragonite saturation state, standard deviationOmega Arg std dev±Di Giglio, SarahCalculated using CO2SYS
96Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
97Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
98Carbon dioxide, standard deviationCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
99Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
100Fugacity of carbon dioxide in seawater, standard deviationfCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
101Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
102Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
103Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
104Bicarbonate ion, standard deviation[HCO3]- std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
105Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
106Carbonate ion, standard deviation[CO3]2- std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
107Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
108Carbon, inorganic, dissolved, standard deviationDIC std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
109Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
110Aragonite saturation state, standard deviationOmega Arg std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
111Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
112Calcite saturation state, standard deviationOmega Cal std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
872 data points

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