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Bernal, Ainhoa; Viñas, Jordi; Olivar, M Pilar (2021): Genetic support for the morphological identification of larvae of Myctophidae, Gonostomatidae, Sternoptychidae and Phosichthyidae (Pisces) from the western Mediterranean [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.928703

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Abstract:
Mesopelagic fishes experience an extreme body transformation from larvae to adults. DNA barcoding has been useful in establishing phylogenetic relationships among mesopelagic and other deep-sea fishes, however no molecular evidence to confirm the identity of their larvae was available so far. Molecular analyses were conducted to identify the larvae and adults of 18 species of the most abundant and frequent mesopelagic fishes in the western Mediterranean, across 14 genera. For myctophids, 7 of 9 species of the subfamily Lampanyctinae and all species from Myctophinae (6) were analysed. At least 565 nucleotides of the mtDNA CO1 region were sequenced. The 12S rRNA region was selected for C. braueri and C. pygmaea (372 nucleotides). Pairwise nucleotide distances were notably higher inter- than intraspecifically allowing to discern between congeners such as Cyclothone braueri and C. pygmaea, Hygophum benoiti and H. hygomii, Lampanyctus crocodilus and L. pusillus, and Notoscopelus bolini and N. elongatus. The good fit between larvae and adult sequences for each species proved the accuracy of earlier larval descriptions based on morphology and pigmentation characters. A list of the genetic markers used to identify each species with their accession numbers in Genbank is provided here along with their developmental stage, sampling location and depth.
Keyword(s):
12S ribosomal ribonucleic acid; cytochrome c oxidase subunit 1; DNA-barcoding; larval identification; mesopelagic fish; Western Mediterranean Sea
Supplement to:
Bernal, Ainhoa; Viñas, Jordi; Olivar, M Pilar (2014): Genetic support for the morphological identification of larvae of Myctophidae, Gonostomatidae, Sternoptychidae and Phosichthyidae (Pisces) from the western Mediterranean. Scientia Marina, 78(4), 461-471, https://doi.org/10.3989/scimar.04072.27A
Further details:
Massuti, Enric; UTM-CSIC (2018): IDEADOS-10 Cruise, RV Sarmiento de Gamboa. UTM-CSIC, https://doi.org/10.20351/29SG20100712
Funding:
Horizon 2020 (H2020), grant/award no. 817806: Sustainable management of mesopelagic resources
Ministerio de Ciencia e Innovación (MICINN), grant/award no. CTM2007-65844-C03: Estructura y dinámica del ecosistema bentopelágico de talud en dos zonas oligotróficas del Mediterráneo: una aproximación multidisciplinar y a distintas escalas temporales en las Islas Baleares
Coverage:
Median Latitude: 39.521841 * Median Longitude: 2.314504 * South-bound Latitude: 38.957800 * West-bound Longitude: 2.063300 * North-bound Latitude: 39.857800 * East-bound Longitude: 2.727000
Date/Time Start: 2010-07-14T06:56:00 * Date/Time End: 2010-07-28T21:33:00
Minimum DEPTH, water: m * Maximum DEPTH, water: 900 m
Event(s):
IDEADOS_2010_07-1  * Latitude Start: 39.011900 * Longitude Start: 2.413200 * Latitude End: 38.957800 * Longitude End: 2.434500 * Date/Time Start: 2010-07-16T09:48:00 * Date/Time End: 2010-07-16T11:22:00 * Elevation: -902.0 m * Mesh size: 10 mm * Location: Balearic Islands, western Mediterranean Sea * Campaign: IDEADOS_0710 (IDEADOS-10) * Basis: Sarmiento de Gamboa * Method/Device: Midwater trawl, Pelagica 112 m² (Pelagica 112)
IDEADOS_2010_08-1  * Latitude Start: 39.715000 * Longitude Start: 2.276000 * Latitude End: 39.715000 * Longitude End: 2.276000 * Date/Time Start: 2010-07-16T09:04:00 * Date/Time End: 2010-07-16T10:16:00 * Mesh size: 10 mm * Location: Balearic Islands, western Mediterranean Sea * Campaign: IDEADOS_0710 (IDEADOS-10) * Basis: Sarmiento de Gamboa * Method/Device: Midwater trawl, Pelagica 112 m² (Pelagica 112)
IDEADOS_2010_09-1  * Latitude Start: 39.700000 * Longitude Start: 2.170000 * Latitude End: 39.700000 * Longitude End: 2.170000 * Date/Time Start: 2010-07-22T12:00:00 * Date/Time End: 2010-07-22T13:00:00 * Mesh size: 10 mm * Location: Balearic Islands, western Mediterranean Sea * Campaign: IDEADOS_0710 (IDEADOS-10) * Basis: Sarmiento de Gamboa * Method/Device: Midwater trawl, Pelagica 112 m² (Pelagica 112)
Comment:
Juvenile: Juvenile fish that finished transformation from larva to juvenile and that are not yet mature.
Transforming: In the process of metamorphosis from larva to juvenile.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
Event labelEventBernal, Ainhoa
Station labelStationBernal, Ainhoa
Date/time startDate/time startBernal, Ainhoa
Date/time endDate/time endBernal, Ainhoa
Latitude of eventLatitudeBernal, Ainhoa
Longitude of eventLongitudeBernal, Ainhoa
Latitude of event 2Latitude 2Bernal, Ainhoa
Longitude of event 2Longitude 2Bernal, Ainhoa
DEPTH, waterDepth watermBernal, AinhoaGeocode – min
10 DEPTH, waterDepth watermBernal, AinhoaGeocode – max
11 FamilyFamilyBernal, Ainhoa
12 SpeciesSpeciesBernal, Ainhoa
13 Sequence lengthSeq lbpBernal, AinhoaABI Prism 310 Genetic Analyzer, Applied Biosystems
14 Gene nameGeneBernal, Ainhoa
15 Accession number, geneticsAccess no genBernal, Ainhoa
16 IdentificationIDBernal, Ainhoa
17 Life stageLife stageBernal, Ainhoa
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
680 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Event

Station

Date/time start

Date/time end

Latitude

Longitude

Latitude 2

Longitude 2

Depth water [m]
(min)
10 
Depth water [m]
(max)
11 
Family
12 
Species
13 
Seq l [bp]
14 
Gene
15 
Access no gen
16 
ID
17 
Life stage
IDEADOS_2010_07-1 PP72010-07-16T09:482010-07-16T11:2239.01192.413238.95782.4345430430SternoptychidaeArgyropelecus hemigymnus565cytochrome c oxidase subunit I (COI)insdc:KC616410AhA2Adult
IDEADOS_2010_IKMT_17 IKMT-172010-07-24T22:422010-07-24T23:1239.82802.170039.82802.1700025MyctophidaeBenthosema glaciale565cytochrome c oxidase subunit I (COI)insdc:KC616366BgA2Adult
IDEADOS_2010_07-1PP72010-07-16T09:482010-07-16T11:2239.01192.413238.95782.4345430430MyctophidaeBenthosema glaciale565cytochrome c oxidase subunit I (COI)insdc:KC616368BgA4Adult
IDEADOS_2010_IKMT_17_400 IKMT-17_4002010-07-23T20:402010-07-23T21:1039.81602.142039.81602.1420430430MyctophidaeBenthosema glaciale565cytochrome c oxidase subunit I (COI)insdc:KC616369BgA5Adult
IDEADOS_2010_IKMT_26_F IKMT-26_F2010-07-26T19:472010-07-26T20:1739.64602.175039.64602.1750216216MyctophidaeBenthosema glaciale565cytochrome c oxidase subunit I (COI)insdc:KC616365BgL1Larva
IDEADOS_2010_MOC_19-500 MOC-19_N02010-07-25T00:102010-07-25T00:1539.78142.116739.81782.15110890MyctophidaeBenthosema glaciale566cytochrome c oxidase subunit I (COI)insdc:KC616367BgT3Transforming
IDEADOS_2010_MOC_18-900 MOC-18_N02010-07-24T03:522010-07-24T04:2439.83892.206939.85782.2803600800GonostomatidaeCyclothone braueri372mitochondrial 12S rRNAinsdc:KC616354CbJ6Juvenile
IDEADOS_2010_MOC_21 MOC-21_N72010-07-25T14:502010-07-25T14:5439.63672.160339.65222.17722550GonostomatidaeCyclothone braueri372mitochondrial 12S rRNAinsdc:KC616355CbL1Larva
IDEADOS_2010_IKMT_09_SUP IKMT-9_SUP2010-07-17T04:302010-07-17T05:0039.04602.700039.04602.70002424GonostomatidaeCyclothone braueri372mitochondrial 12S rRNAinsdc:KC616353CbL2Larva
IDEADOS_2010_IKMT_09_SUPIKMT-9_SUP2010-07-17T04:302010-07-17T05:0039.04602.700039.04602.70002424GonostomatidaeCyclothone braueri372mitochondrial 12S rRNAinsdc:KC616356CbL4Larva
IDEADOS_2010_WP2_03_F WP2-3_F2010-07-14T17:152010-07-14T17:4538.98302.429038.98302.42900900GonostomatidaeCyclothone braueri372mitochondrial 12S rRNAinsdc:KC616357CpA2Adult
IDEADOS_2010_MOC_19-900 MOC-19_N12010-07-24T13:092010-07-24T13:1839.80502.150339.84922.2408800890GonostomatidaeCyclothone braueri372mitochondrial 12S rRNAinsdc:KC616358CpA3Adult
IDEADOS_2010_12-1 PP122010-07-28T07:022010-07-28T08:0539.82002.107339.81502.1570450450MyctophidaeCeratoscopelus maderensis565cytochrome c oxidase subunit I (COI)insdc:KC616363CmA5Adult
IDEADOS_2010_IKMT_19_SUP IKMT-19_SUP2010-07-24T20:442010-07-24T21:1439.83902.212039.83902.21206565MyctophidaeCeratoscopelus maderensis565cytochrome c oxidase subunit I (COI)insdc:KC616364CmA6Adult
IDEADOS_2010_MOC_14 MOC-14_N02010-07-18T03:212010-07-18T03:5139.05672.689739.08502.6925050MyctophidaeCeratoscopelus maderensis565cytochrome c oxidase subunit I (COI)insdc:KC616359CmL1Larva
IDEADOS_2010_MOC_10 MOC-10 N12010-07-17T09:122010-07-17T09:1739.05172.699739.07082.695650200MyctophidaeCeratoscopelus maderensis565cytochrome c oxidase subunit I (COI)insdc:KC616360CmL2Larva
IDEADOS_2010_MOC_10MOC-10 N12010-07-17T09:122010-07-17T09:1739.05172.699739.07082.695650200MyctophidaeCeratoscopelus maderensis565cytochrome c oxidase subunit I (COI)insdc:KC616361CmL3Larva
IDEADOS_2010_IKMT_08 IKMT-82010-07-16T19:212010-07-16T19:5139.05602.727039.05602.72702828MyctophidaeCeratoscopelus maderensis565cytochrome c oxidase subunit I (COI)insdc:KC616362CmL4Larva
IDEADOS_2010_09-1 PP92010-07-22T12:002010-07-22T13:0039.70002.170039.70002.1700100100MyctophidaeDiaphus holti565cytochrome c oxidase subunit I (COI)insdc:KC616389DhA2Adult
IDEADOS_2010_09-1PP92010-07-22T12:002010-07-22T13:0039.70002.170039.70002.1700100100MyctophidaeDiaphus holti565cytochrome c oxidase subunit I (COI)insdc:KC616390DhA5Adult
IDEADOS_2010_09-1PP92010-07-22T12:002010-07-22T13:0039.70002.170039.70002.1700100100MyctophidaeDiaphus holti565cytochrome c oxidase subunit I (COI)insdc:KC616391DhA6Adult
IDEADOS_2010_MOC_20 MOC-20_N72010-07-25T10:562010-07-25T11:0039.65722.063339.68562.0839025MyctophidaeDiaphus holti565cytochrome c oxidase subunit I (COI)insdc:KC616388DhL1Larva
IDEADOS_2010_IKMT_09_F IKMT-9_F2010-07-17T03:082010-07-17T03:3839.09102.702039.09102.7020214214MyctophidaeElectrona risso565cytochrome c oxidase subunit I (COI)insdc:KC616411ErT1Transforming
IDEADOS_2010_07-1PP72010-07-16T09:482010-07-16T11:2239.01192.413238.95782.4345430430MyctophidaeHygophum benoiti565cytochrome c oxidase subunit I (COI)insdc:KC616373HbA5Adult
IDEADOS_2010_15-1 PP152010-07-28T13:152010-07-28T14:5039.81432.147139.77982.1006410410MyctophidaeHygophum benoiti565cytochrome c oxidase subunit I (COI)insdc:KC616374HbA6Adult
IDEADOS_2010_12-1PP122010-07-28T07:022010-07-28T08:0539.82002.107339.81502.1570450450MyctophidaeHygophum benoiti565cytochrome c oxidase subunit I (COI)insdc:KC616375HbA7Adult
IDEADOS_2010_MOC_22 MOC-22_N12010-07-25T22:452010-07-25T22:5039.69642.222239.68442.2022150200MyctophidaeHygophum benoiti565cytochrome c oxidase subunit I (COI)insdc:KC616370HbL1Larva
IDEADOS_2010_MOC_12 MOC-12_N82010-07-17T18:142010-07-17T18:1839.04032.699739.07282.7022025MyctophidaeHygophum benoiti565cytochrome c oxidase subunit I (COI)insdc:KC616371HbL2Larva
IDEADOS_2010_MOC_19-900MOC-19_N12010-07-24T13:092010-07-24T13:1839.80502.150339.84922.2408800890MyctophidaeHygophum benoiti565cytochrome c oxidase subunit I (COI)insdc:KC616372HbT4Transforming
IDEADOS_2010_17-1 PP172010-07-28T20:332010-07-28T21:3339.81052.151539.77782.10568080MyctophidaeHygophum hygomii565cytochrome c oxidase subunit I (COI)insdc:KC616376HhA1Adult
IDEADOS_2010_12-1PP122010-07-28T07:022010-07-28T08:0539.82002.107339.81502.1570450450MyctophidaeHygophum hygomii565cytochrome c oxidase subunit I (COI)insdc:KC616377HhA2Adult
IDEADOS_2010_12-1PP122010-07-28T07:022010-07-28T08:0539.82002.107339.81502.1570450450MyctophidaeHygophum hygomii565cytochrome c oxidase subunit I (COI)insdc:KC616378HhA3Adult
IDEADOS_2010_IKMT_17IKMT-172010-07-24T22:422010-07-24T23:1239.82802.170039.82802.1700025MyctophidaeLampanyctus crocodilus565cytochrome c oxidase subunit I (COI)insdc:KC616380LcA2Adult
IDEADOS_2010_IKMT_22_SUP IKMT-22_SUP2010-07-25T20:572010-07-25T21:2739.69202.226039.69202.22602525MyctophidaeLampanyctus crocodilus565cytochrome c oxidase subunit I (COI)insdc:KC616381LcA3Adult
IDEADOS_2010_IKMT_20 IKMT-202010-07-25T03:022010-07-25T03:3239.75102.190039.75102.19004040MyctophidaeLampanyctus crocodilus565cytochrome c oxidase subunit I (COI)insdc:KC616382LcA5Adult
IDEADOS_2010_IKMT_21_SUP IKMT-21_SUP2010-07-25T15:212010-07-25T15:5139.65602.185039.65602.18503838MyctophidaeLampanyctus crocodilus565cytochrome c oxidase subunit I (COI)insdc:KC616379LcL1Larva
IDEADOS_2010_12-1PP122010-07-28T07:022010-07-28T08:0539.82002.107339.81502.1570450450MyctophidaeLobianchia dofleini565cytochrome c oxidase subunit I (COI)insdc:KC616405LdA3Adult
IDEADOS_2010_12-1PP122010-07-28T07:022010-07-28T08:0539.82002.107339.81502.1570450450MyctophidaeLobianchia dofleini565cytochrome c oxidase subunit I (COI)insdc:KC616406LdA4Adult
IDEADOS_2010_IKMT_18_F IKMT-18_F2010-07-24T06:302010-07-24T07:0039.80302.148039.80302.1480414414MyctophidaeLobianchia dofleini565cytochrome c oxidase subunit I (COI)insdc:KC616407LdA5Adult
IDEADOS_2010_IKMT_22_SUPIKMT-22_SUP2010-07-25T20:572010-07-25T21:2739.69202.226039.69202.22602525MyctophidaeLobianchia dofleini564cytochrome c oxidase subunit I (COI)insdc:KF143896LdL1Larva
IDEADOS_2010_IKMT_23_SUP IKMT-23_SUP2010-07-26T05:272010-07-26T05:5739.68302.208039.68302.20802424MyctophidaeLobianchia dofleini565cytochrome c oxidase subunit I (COI)insdc:KC616404LdL2Larva
IDEADOS_2010_IKMT_20IKMT-202010-07-25T03:022010-07-25T03:3239.75102.190039.75102.19004040MyctophidaeLampanyctus pusillus565cytochrome c oxidase subunit I (COI)insdc:KC616385LpA3Adult
IDEADOS_2010_IKMT_17IKMT-172010-07-24T22:422010-07-24T23:1239.82802.170039.82802.1700025MyctophidaeLampanyctus pusillus565cytochrome c oxidase subunit I (COI)insdc:KC616386LpA4Adult
IDEADOS_2010_MOC_15 MOC-15_N02010-07-18T13:342010-07-18T14:0739.03942.700339.06582.70440200MyctophidaeLampanyctus pusillus565cytochrome c oxidase subunit I (COI)insdc:KC616383LpL1Larva
IDEADOS_2010_MOC_22MOC-22_N02010-07-25T23:152010-07-25T23:1939.69642.222239.68442.20220200MyctophidaeLampanyctus pusillus565cytochrome c oxidase subunit I (COI)insdc:KC616384LpL2Larva
IDEADOS_2010_MOC_22MOC-22_N0_SUP2010-07-25T23:152010-07-25T23:1939.69642.222239.68442.2022050MyctophidaeLampanyctus pusillus565cytochrome c oxidase subunit I (COI)insdc:KC616387LpL6Larva
IDEADOS_2010_09-1PP92010-07-22T12:002010-07-22T13:0039.70002.170039.70002.1700100100SternoptychidaeMaurolicus muelleri565cytochrome c oxidase subunit I (COI)insdc:KC616398MmA2Adult
IDEADOS_2010_IKMT_26_FIKMT-26_F2010-07-26T19:472010-07-26T20:1739.64602.175039.64602.1750216216SternoptychidaeMaurolicus muelleri565cytochrome c oxidase subunit I (COI)insdc:KC616399MmA3Adult
IDEADOS_2010_IKMT_23_F IKMT-23_F2010-07-26T03:472010-07-26T04:1739.64302.162039.64302.1620210210SternoptychidaeMaurolicus muelleri565cytochrome c oxidase subunit I (COI)insdc:KC616400MmA6Adult
IDEADOS_2010_MOC_12MOC-12_N82010-07-17T18:142010-07-17T18:1839.04032.699739.07282.7022025SternoptychidaeMaurolicus muelleri565cytochrome c oxidase subunit I (COI)insdc:KC616401MmL1Larva
IDEADOS_2010_IKMT_09_FIKMT-9_F2010-07-17T03:082010-07-17T03:3839.09102.702039.09102.7020214214SternoptychidaeMaurolicus muelleri565cytochrome c oxidase subunit I (COI)insdc:KC616402MmL4Larva
IDEADOS_2010_MOC_22MOC-22_N12010-07-25T22:452010-07-25T22:5039.69642.222239.68442.2022150200SternoptychidaeMaurolicus muelleri565cytochrome c oxidase subunit I (COI)insdc:KC616403MmL5Larva
IDEADOS_2010_12-1PP122010-07-28T07:022010-07-28T08:0539.82002.107339.81502.1570450450MyctophidaeMyctophum punctatum565cytochrome c oxidase subunit I (COI)insdc:KC616393MpA2Adult
IDEADOS_2010_IKMT_08IKMT-82010-07-16T19:212010-07-16T19:5139.05602.727039.05602.72702828MyctophidaeMyctophum punctatum565cytochrome c oxidase subunit I (COI)insdc:KC616396MpA5Adult
IDEADOS_2010_IKMT_17IKMT-172010-07-24T22:422010-07-24T23:1239.82802.170039.82802.1700025MyctophidaeMyctophum punctatum565cytochrome c oxidase subunit I (COI)insdc:KC616397MpA6Adult
IDEADOS_2010_MOC_14MOC-14_N12010-07-18T03:372010-07-18T03:5039.05672.689739.08502.692550250MyctophidaeMyctophum punctatum565cytochrome c oxidase subunit I (COI)insdc:KC616392MpL1Larva
IDEADOS_2010_MOC_06 MOC-6_N02010-07-15T16:322010-07-15T16:4239.06502.466739.01562.41170500MyctophidaeMyctophum punctatum565cytochrome c oxidase subunit I (COI)insdc:KC616394MpL3Larva
IDEADOS_2010_MOC_06MOC-6_N02010-07-15T16:322010-07-15T16:4239.06502.466739.01562.41170500MyctophidaeMyctophum punctatum565cytochrome c oxidase subunit I (COI)insdc:KC616395MpL4Larva
IDEADOS_2010_08-1 PP82010-07-16T09:042010-07-16T10:1639.71502.276039.71502.2760235235MyctophidaeNotoscopelus bolini565cytochrome c oxidase subunit I (COI)insdc:KC616408NbA1Adult
IDEADOS_2010_IKMT_09_FIKMT-9_F2010-07-17T03:082010-07-17T03:3839.09102.702039.09102.7020214214MyctophidaeNotoscopelus elongatus565cytochrome c oxidase subunit I (COI)insdc:KC616409NeA1Adult
IDEADOS_2010_12-1PP122010-07-28T07:022010-07-28T08:0539.82002.107339.81502.1570450450MyctophidaeSymbolophorus veranyi565cytochrome c oxidase subunit I (COI)insdc:KF143897SvA3Adult
IDEADOS_2010_07-1PP72010-07-16T09:482010-07-16T11:2239.01192.413238.95782.4345430430PhosichthyidaeVinciguerria attenuata565cytochrome c oxidase subunit I (COI)insdc:KC616412VaA1Adult
IDEADOS_2010_MOC_02 MOC-2_N02010-07-14T06:562010-07-14T07:0938.96502.459439.00812.44580500PhosichthyidaeVinciguerria attenuata565cytochrome c oxidase subunit I (COI)insdc:KC616413VaA2Adult
IDEADOS_2010_IKMT_19_INT IKMT-19_INT2010-07-24T19:452010-07-24T20:1539.83902.212039.83902.21200200PhosichthyidaeVinciguerria attenuata565cytochrome c oxidase subunit I (COI)insdc:KC616414VaA3Adult
IDEADOS_2010_IKMT_17_400IKMT-17_4002010-07-23T20:402010-07-23T21:1039.81602.142039.81602.1420430430PhosichthyidaeVinciguerria attenuata565cytochrome c oxidase subunit I (COI)insdc:KC616415VaA4Adult
IDEADOS_2010_14-1 PP142010-07-28T11:262010-07-28T12:2639.79652.114339.82882.1643330330PhosichthyidaeVinciguerria attenuata565cytochrome c oxidase subunit I (COI)insdc:KC616416VaA5Adult
IDEADOS_2010_14-1PP142010-07-28T11:262010-07-28T12:2639.79652.114339.82882.1643330330PhosichthyidaeVinciguerria attenuata565cytochrome c oxidase subunit I (COI)insdc:KC616417VaA6Adult
IDEADOS_2010_MOC_02MOC-2_N02010-07-14T06:562010-07-14T07:0938.96502.459439.00812.44580500PhosichthyidaeVinciguerria attenuata565cytochrome c oxidase subunit I (COI)insdc:KC616418VaA7Adult