Goehlich, Henry; Sartoris, Linda; Wagner, Kim-Sara; Wendling, Carolin Charlotte; Roth, Olivia (2021): Gene expression data of pipefish females Syngnathus typhle (minus delta CT) [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.926769, In: Goehlich, H et al. (2021): Experiment on pipefish Syngnathus typhle to inhabit low salinity areas of the Baltic Sea [dataset bundled publication]. PANGAEA, https://doi.org/10.1594/PANGAEA.926923
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Abstract:
To obtain signatures of local adaptation and phenotypic plasticity in pipefish originating from different salinity levels we measured targeted gene expression levels. This dataset contains -deltaCT values obtained from real time PCR on a fluidigm chip for all female pipefish and targeted genes used in this experiment.
Keyword(s):
Parameter(s):
# | Name | Short Name | Unit | Principal Investigator | Method/Device | Comment |
---|---|---|---|---|---|---|
1 | Species | Species | Goehlich, Henry | |||
2 | Identification | ID | Goehlich, Henry | Number of adult pipefish | ||
3 | Tank number | Tank No | Goehlich, Henry | Number of tank adult pipefish was kept during acclimation and pregnancy | ||
4 | Location | Location | Goehlich, Henry | Location at which adults were collected | ||
5 | Origin | Origin | Goehlich, Henry | Origin Salinity: Salinity at which adult pipefish were collected: H - High (14 PSU - 17 PSU); L - Low (7 PSU - 11 PSU) | ||
6 | Experiment | Exp | Goehlich, Henry | Acclimation Salinity: pipefish adults acclimation in the lab : H - High (15 PSU); L - Low (7 PSU) | ||
7 | Sex | Sex | Goehlich, Henry | f - Females | ||
8 | Syngnathus typhle, length | S. typhle l | cm | Goehlich, Henry | before decapitation | |
9 | Syngnathus typhle, mass | S. typhle m | g | Goehlich, Henry | before decapitation | |
10 | Condition factor | CF | g/cm3 | Goehlich, Henry | K is a factor for body size, integrating total length and weight of individuals(weight/(length^3) | |
11 | Minus Δ threshold cycle, quantitative polymerase chain reaction | Minus Δ Ct qPCR | Goehlich, Henry | High Throughput PCR, Fluidigm BioMark HD | aif: Allograft inflammation factor | |
12 | Minus Δ threshold cycle, quantitative polymerase chain reaction | Minus Δ Ct qPCR | Goehlich, Henry | High Throughput PCR, Fluidigm BioMark HD | ash: Histone methyltransferase | |
13 | Minus Δ threshold cycle, quantitative polymerase chain reaction | Minus Δ Ct qPCR | Goehlich, Henry | High Throughput PCR, Fluidigm BioMark HD | BROMO: Histone acetyltransferase | |
14 | Minus Δ threshold cycle, quantitative polymerase chain reaction | Minus Δ Ct qPCR | Goehlich, Henry | High Throughput PCR, Fluidigm BioMark HD | C1: Recognition subcomponent C1q | |
15 | Minus Δ threshold cycle, quantitative polymerase chain reaction | Minus Δ Ct qPCR | Goehlich, Henry | High Throughput PCR, Fluidigm BioMark HD | C3: Complement component 3 | |
16 | Minus Δ threshold cycle, quantitative polymerase chain reaction | Minus Δ Ct qPCR | Goehlich, Henry | High Throughput PCR, Fluidigm BioMark HD | C9: Complement component 9 | |
17 | Minus Δ threshold cycle, quantitative polymerase chain reaction | Minus Δ Ct qPCR | Goehlich, Henry | High Throughput PCR, Fluidigm BioMark HD | calrcul: Calreticulin | |
18 | Minus Δ threshold cycle, quantitative polymerase chain reaction | Minus Δ Ct qPCR | Goehlich, Henry | High Throughput PCR, Fluidigm BioMark HD | cf: Coagulation factor II | |
19 | Minus Δ threshold cycle, quantitative polymerase chain reaction | Minus Δ Ct qPCR | Goehlich, Henry | High Throughput PCR, Fluidigm BioMark HD | ck7: Chemokine 7 | |
20 | Minus Δ threshold cycle, quantitative polymerase chain reaction | Minus Δ Ct qPCR | Goehlich, Henry | High Throughput PCR, Fluidigm BioMark HD | ddpgly: Ddp-glycosyltransferase | |
21 | Minus Δ threshold cycle, quantitative polymerase chain reaction | Minus Δ Ct qPCR | Goehlich, Henry | High Throughput PCR, Fluidigm BioMark HD | dnmt1: DNA (cytosine-5)-methyltransferase 1 | |
22 | Minus Δ threshold cycle, quantitative polymerase chain reaction | Minus Δ Ct qPCR | Goehlich, Henry | High Throughput PCR, Fluidigm BioMark HD | dnmt3a: DNA (Cytosine-5-)-Methyltransferase 3 Alpha | |
23 | Minus Δ threshold cycle, quantitative polymerase chain reaction | Minus Δ Ct qPCR | Goehlich, Henry | High Throughput PCR, Fluidigm BioMark HD | g6dph: Glucose 6 phosphate dehydrogenase (G6PD) | |
24 | Minus Δ threshold cycle, quantitative polymerase chain reaction | Minus Δ Ct qPCR | Goehlich, Henry | High Throughput PCR, Fluidigm BioMark HD | hdac6: Histone deacetylase 6-like | |
25 | Minus Δ threshold cycle, quantitative polymerase chain reaction | Minus Δ Ct qPCR | Goehlich, Henry | High Throughput PCR, Fluidigm BioMark HD | hemk2: HemK-methyltransferase family member 2 | |
26 | Minus Δ threshold cycle, quantitative polymerase chain reaction | Minus Δ Ct qPCR | Goehlich, Henry | High Throughput PCR, Fluidigm BioMark HD | hsp60: Heat shock protein 60 kDa | |
27 | Minus Δ threshold cycle, quantitative polymerase chain reaction | Minus Δ Ct qPCR | Goehlich, Henry | High Throughput PCR, Fluidigm BioMark HD | ikcyto: Ik cytokine(RED-protein) | |
28 | Minus Δ threshold cycle, quantitative polymerase chain reaction | Minus Δ Ct qPCR | Goehlich, Henry | High Throughput PCR, Fluidigm BioMark HD | il8: Interleukin 8 | |
29 | Minus Δ threshold cycle, quantitative polymerase chain reaction | Minus Δ Ct qPCR | Goehlich, Henry | High Throughput PCR, Fluidigm BioMark HD | intf: Interferon induced transmembrane protein 3 | |
30 | Minus Δ threshold cycle, quantitative polymerase chain reaction | Minus Δ Ct qPCR | Goehlich, Henry | High Throughput PCR, Fluidigm BioMark HD | jmicphd: Lysine-specific demethylase 5B | |
31 | Minus Δ threshold cycle, quantitative polymerase chain reaction | Minus Δ Ct qPCR | Goehlich, Henry | High Throughput PCR, Fluidigm BioMark HD | kin: Kinesin | |
32 | Minus Δ threshold cycle, quantitative polymerase chain reaction | Minus Δ Ct qPCR | Goehlich, Henry | High Throughput PCR, Fluidigm BioMark HD | lectpt1: Lectin protein type I | |
33 | Minus Δ threshold cycle, quantitative polymerase chain reaction | Minus Δ Ct qPCR | Goehlich, Henry | High Throughput PCR, Fluidigm BioMark HD | lectpt2: Lectin protein type II | |
34 | Minus Δ threshold cycle, quantitative polymerase chain reaction | Minus Δ Ct qPCR | Goehlich, Henry | High Throughput PCR, Fluidigm BioMark HD | n6admet: DNA methyltransferase (N6-methyladenine) | |
35 | Minus Δ threshold cycle, quantitative polymerase chain reaction | Minus Δ Ct qPCR | Goehlich, Henry | High Throughput PCR, Fluidigm BioMark HD | no66: Histone demethylation (demethylates'Lys-4'(H3K4me),(H3K36me)) | |
36 | Minus Δ threshold cycle, quantitative polymerase chain reaction | Minus Δ Ct qPCR | Goehlich, Henry | High Throughput PCR, Fluidigm BioMark HD | nramp: Macrophage activation | |
37 | Minus Δ threshold cycle, quantitative polymerase chain reaction | Minus Δ Ct qPCR | Goehlich, Henry | High Throughput PCR, Fluidigm BioMark HD | pepdgly: Peptidoglycan recognition protein II | |
38 | Minus Δ threshold cycle, quantitative polymerase chain reaction | Minus Δ Ct qPCR | Goehlich, Henry | High Throughput PCR, Fluidigm BioMark HD | ripop: Ribosomal protein | |
39 | Minus Δ threshold cycle, quantitative polymerase chain reaction | Minus Δ Ct qPCR | Goehlich, Henry | High Throughput PCR, Fluidigm BioMark HD | tap: Tap-binding protein (Tapasin) | |
40 | Minus Δ threshold cycle, quantitative polymerase chain reaction | Minus Δ Ct qPCR | Goehlich, Henry | High Throughput PCR, Fluidigm BioMark HD | tpr: Lysine-specific demethylase 6A | |
41 | Minus Δ threshold cycle, quantitative polymerase chain reaction | Minus Δ Ct qPCR | Goehlich, Henry | High Throughput PCR, Fluidigm BioMark HD | tranfe: Transferrin | |
42 | Minus Δ threshold cycle, quantitative polymerase chain reaction | Minus Δ Ct qPCR | Goehlich, Henry | High Throughput PCR, Fluidigm BioMark HD | tspo: Translocator protein | |
43 | Minus Δ threshold cycle, quantitative polymerase chain reaction | Minus Δ Ct qPCR | Goehlich, Henry | High Throughput PCR, Fluidigm BioMark HD | tyroprot: Tyroproteinkinase | |
44 | Minus Δ threshold cycle, quantitative polymerase chain reaction | Minus Δ Ct qPCR | Goehlich, Henry | High Throughput PCR, Fluidigm BioMark HD | ubi: Ubiquitin |
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Size:
6820 data points
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