Citation:

PANGAEA.926923

Name: Gene expression data of pipefish females Syngnathus typhle (minus delta CT)
Published: 2021-01-19
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Baltic Sea; climate change; genetic adaptation; Local adaptation; phenotypic plasticity; Salinity; syngnathids; Transgenerational plasticity

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Published: 2021-01-19 • DOI registered: 2021-05-12

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Abstract:

To obtain signatures of local adaptation and phenotypic plasticity in pipefish originating from different salinity levels we measured targeted gene expression levels. This dataset contains -deltaCT values obtained from real time PCR on a fluidigm chip for all female pipefish and targeted genes used in this experiment.

Keyword(s):

Baltic Sea; climate change; genetic adaptation; Local adaptation; phenotypic plasticity; Salinity; syngnathids; Transgenerational plasticity

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Species	Species		Goehlich, Henry
2	Identification	ID		Goehlich, Henry		Number of adult pipefish
3	Tank number	Tank No		Goehlich, Henry		Number of tank adult pipefish was kept during acclimation and pregnancy
4	Location	Location		Goehlich, Henry		Location at which adults were collected
5	Origin	Origin		Goehlich, Henry		Origin Salinity: Salinity at which adult pipefish were collected: H - High (14 PSU - 17 PSU); L - Low (7 PSU - 11 PSU)
6	Experiment	Exp		Goehlich, Henry		Acclimation Salinity: pipefish adults acclimation in the lab : H - High (15 PSU); L - Low (7 PSU)
7	Sex	Sex		Goehlich, Henry		f - Females
8	Syngnathus typhle, length	S. typhle l	cm	Goehlich, Henry		before decapitation
9	Syngnathus typhle, mass	S. typhle m	g	Goehlich, Henry		before decapitation
10	Condition factor	CF	g/cm³	Goehlich, Henry		K is a factor for body size, integrating total length and weight of individuals(weight/(length^3)
11	Minus Δ threshold cycle, quantitative polymerase chain reaction	Minus Δ Ct qPCR		Goehlich, Henry	High Throughput PCR, Fluidigm BioMark HD	aif: Allograft inflammation factor
12	Minus Δ threshold cycle, quantitative polymerase chain reaction	Minus Δ Ct qPCR		Goehlich, Henry	High Throughput PCR, Fluidigm BioMark HD	ash: Histone methyltransferase
13	Minus Δ threshold cycle, quantitative polymerase chain reaction	Minus Δ Ct qPCR		Goehlich, Henry	High Throughput PCR, Fluidigm BioMark HD	BROMO: Histone acetyltransferase
14	Minus Δ threshold cycle, quantitative polymerase chain reaction	Minus Δ Ct qPCR		Goehlich, Henry	High Throughput PCR, Fluidigm BioMark HD	C1: Recognition subcomponent C1q
15	Minus Δ threshold cycle, quantitative polymerase chain reaction	Minus Δ Ct qPCR		Goehlich, Henry	High Throughput PCR, Fluidigm BioMark HD	C3: Complement component 3
16	Minus Δ threshold cycle, quantitative polymerase chain reaction	Minus Δ Ct qPCR		Goehlich, Henry	High Throughput PCR, Fluidigm BioMark HD	C9: Complement component 9
17	Minus Δ threshold cycle, quantitative polymerase chain reaction	Minus Δ Ct qPCR		Goehlich, Henry	High Throughput PCR, Fluidigm BioMark HD	calrcul: Calreticulin
18	Minus Δ threshold cycle, quantitative polymerase chain reaction	Minus Δ Ct qPCR		Goehlich, Henry	High Throughput PCR, Fluidigm BioMark HD	cf: Coagulation factor II
19	Minus Δ threshold cycle, quantitative polymerase chain reaction	Minus Δ Ct qPCR		Goehlich, Henry	High Throughput PCR, Fluidigm BioMark HD	ck7: Chemokine 7
20	Minus Δ threshold cycle, quantitative polymerase chain reaction	Minus Δ Ct qPCR		Goehlich, Henry	High Throughput PCR, Fluidigm BioMark HD	ddpgly: Ddp-glycosyltransferase
21	Minus Δ threshold cycle, quantitative polymerase chain reaction	Minus Δ Ct qPCR		Goehlich, Henry	High Throughput PCR, Fluidigm BioMark HD	dnmt1: DNA (cytosine-5)-methyltransferase 1
22	Minus Δ threshold cycle, quantitative polymerase chain reaction	Minus Δ Ct qPCR		Goehlich, Henry	High Throughput PCR, Fluidigm BioMark HD	dnmt3a: DNA (Cytosine-5-)-Methyltransferase 3 Alpha
23	Minus Δ threshold cycle, quantitative polymerase chain reaction	Minus Δ Ct qPCR		Goehlich, Henry	High Throughput PCR, Fluidigm BioMark HD	g6dph: Glucose 6 phosphate dehydrogenase (G6PD)
24	Minus Δ threshold cycle, quantitative polymerase chain reaction	Minus Δ Ct qPCR		Goehlich, Henry	High Throughput PCR, Fluidigm BioMark HD	hdac6: Histone deacetylase 6-like
25	Minus Δ threshold cycle, quantitative polymerase chain reaction	Minus Δ Ct qPCR		Goehlich, Henry	High Throughput PCR, Fluidigm BioMark HD	hemk2: HemK-methyltransferase family member 2
26	Minus Δ threshold cycle, quantitative polymerase chain reaction	Minus Δ Ct qPCR		Goehlich, Henry	High Throughput PCR, Fluidigm BioMark HD	hsp60: Heat shock protein 60 kDa
27	Minus Δ threshold cycle, quantitative polymerase chain reaction	Minus Δ Ct qPCR		Goehlich, Henry	High Throughput PCR, Fluidigm BioMark HD	ikcyto: Ik cytokine(RED-protein)
28	Minus Δ threshold cycle, quantitative polymerase chain reaction	Minus Δ Ct qPCR		Goehlich, Henry	High Throughput PCR, Fluidigm BioMark HD	il8: Interleukin 8
29	Minus Δ threshold cycle, quantitative polymerase chain reaction	Minus Δ Ct qPCR		Goehlich, Henry	High Throughput PCR, Fluidigm BioMark HD	intf: Interferon induced transmembrane protein 3
30	Minus Δ threshold cycle, quantitative polymerase chain reaction	Minus Δ Ct qPCR		Goehlich, Henry	High Throughput PCR, Fluidigm BioMark HD	jmicphd: Lysine-specific demethylase 5B
31	Minus Δ threshold cycle, quantitative polymerase chain reaction	Minus Δ Ct qPCR		Goehlich, Henry	High Throughput PCR, Fluidigm BioMark HD	kin: Kinesin
32	Minus Δ threshold cycle, quantitative polymerase chain reaction	Minus Δ Ct qPCR		Goehlich, Henry	High Throughput PCR, Fluidigm BioMark HD	lectpt1: Lectin protein type I
33	Minus Δ threshold cycle, quantitative polymerase chain reaction	Minus Δ Ct qPCR		Goehlich, Henry	High Throughput PCR, Fluidigm BioMark HD	lectpt2: Lectin protein type II
34	Minus Δ threshold cycle, quantitative polymerase chain reaction	Minus Δ Ct qPCR		Goehlich, Henry	High Throughput PCR, Fluidigm BioMark HD	n6admet: DNA methyltransferase (N6-methyladenine)
35	Minus Δ threshold cycle, quantitative polymerase chain reaction	Minus Δ Ct qPCR		Goehlich, Henry	High Throughput PCR, Fluidigm BioMark HD	no66: Histone demethylation (demethylates'Lys-4'(H3K4me),(H3K36me))
36	Minus Δ threshold cycle, quantitative polymerase chain reaction	Minus Δ Ct qPCR		Goehlich, Henry	High Throughput PCR, Fluidigm BioMark HD	nramp: Macrophage activation
37	Minus Δ threshold cycle, quantitative polymerase chain reaction	Minus Δ Ct qPCR		Goehlich, Henry	High Throughput PCR, Fluidigm BioMark HD	pepdgly: Peptidoglycan recognition protein II
38	Minus Δ threshold cycle, quantitative polymerase chain reaction	Minus Δ Ct qPCR		Goehlich, Henry	High Throughput PCR, Fluidigm BioMark HD	ripop: Ribosomal protein
39	Minus Δ threshold cycle, quantitative polymerase chain reaction	Minus Δ Ct qPCR		Goehlich, Henry	High Throughput PCR, Fluidigm BioMark HD	tap: Tap-binding protein (Tapasin)
40	Minus Δ threshold cycle, quantitative polymerase chain reaction	Minus Δ Ct qPCR		Goehlich, Henry	High Throughput PCR, Fluidigm BioMark HD	tpr: Lysine-specific demethylase 6A
41	Minus Δ threshold cycle, quantitative polymerase chain reaction	Minus Δ Ct qPCR		Goehlich, Henry	High Throughput PCR, Fluidigm BioMark HD	tranfe: Transferrin
42	Minus Δ threshold cycle, quantitative polymerase chain reaction	Minus Δ Ct qPCR		Goehlich, Henry	High Throughput PCR, Fluidigm BioMark HD	tspo: Translocator protein
43	Minus Δ threshold cycle, quantitative polymerase chain reaction	Minus Δ Ct qPCR		Goehlich, Henry	High Throughput PCR, Fluidigm BioMark HD	tyroprot: Tyroproteinkinase
44	Minus Δ threshold cycle, quantitative polymerase chain reaction	Minus Δ Ct qPCR		Goehlich, Henry	High Throughput PCR, Fluidigm BioMark HD	ubi: Ubiquitin

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Size:

6820 data points

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