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Nishida, Kozue; Chew, Yue Chin; Miyairi, Yosuke; Hirabayashi, S; Suzuki, Atsushi; Hayashi, Masahiro; Yamamoto, Yuzo; Sato, Mizuho; Nojiri, Yukihiro; Yokoyama, Yusuke (2020): Seawater carbonate chemistry and carbon assimilation of marine calcifiers [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.925290

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Abstract:
Ocean acidification by anthropogenic carbon dioxide emissions is projected to depress metabolic and physiological activity in marine calcifiers. To evaluate the sensitivity of marine organisms against ocean acidification, the assimilation of nutrients into carbonate shells and soft tissues must be examined. We designed a novel experimental protocol, reverse radioisotope labelling, to trace partitioning of nutrients within a single bivalve species under ocean acidification conditions. Injecting CO2 gas, free from radiocarbon, can provide a large contrast between carbon dissolved in the water and the one assimilated from atmosphere. By culturing modern aquifer organisms in acidified seawater, we were able to determine differences in the relative contributions of the end members, dissolved inorganic carbon (DIC) in seawater and metabolic CO2, to shell carbonate and soft tissues. Under all pCO2 conditions (463, 653, 872, 1,137 and 1,337 μatm), radiocarbon (Δ14C) values of the bivalve Scapharca broughtonii shell were significantly correlated with seawater DIC values; therefore, shell carbonate was derived principally from seawater DIC. The Δ14C results together with stable carbon isotope (δ13C) data suggest that in S. broughtonii shell δ13C may reflect the kinetics of isotopic equilibration as well as end‐member contributions; thus, care must be taken when analysing end‐member contributions by a previous method using δ13C. The insensitivity of S. broughtonii to perturbations in pCO2 up to at least 1,337 µatm indicates that this species can withstand ocean acidification. Usage of radioisotope to dope for tracer experiments requires strict rules to conduct any operations. Yet, reverse radioisotope labelling proposing in this study has a large advantage and is a powerful tool to understanding physiology of aquifer organisms that can be applicable to various organisms and culture experiments, such as temperature, salinity and acidification experiments, to improve understanding of the proportions of nutrients taken in by marine organisms under changing environments.
Keyword(s):
Animalia; Benthic animals; Benthos; Bottles or small containers/Aquaria (<20 L); Coast and continental shelf; Laboratory experiment; Mollusca; North Pacific; Other studied parameter or process; Scapharca broughtonii; Single species; Temperate
Supplement to:
Nishida, Kozue; Chew, Yue Chin; Miyairi, Yosuke; Hirabayashi, S; Suzuki, Atsushi; Hayashi, Masahiro; Yamamoto, Yuzo; Sato, Mizuho; Nojiri, Yukihiro; Yokoyama, Yusuke (2020): Novel reverse radioisotope labelling experiment reveals carbon assimilation of marine calcifiers under ocean acidification conditions. Methods in Ecology and Evolution, 11(6), 739-750, https://doi.org/10.1111/2041-210X.13396
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2020): seacarb: seawater carbonate chemistry with R. R package version 3.2.14. https://CRAN.R-project.org/package=seacarb
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2020) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-11-30.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1TypeTypeYokoyama, Yusukestudy
2SpeciesSpeciesYokoyama, Yusuke
3Registration number of speciesReg spec noYokoyama, Yusuke
4Uniform resource locator/link to referenceURL refYokoyama, YusukeWoRMS Aphia ID
5Experiment durationExp durationdaysYokoyama, Yusuke
6Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYokoyama, Yusuke
7Δ14CΔ14CYokoyama, YusukeDIC
8Δ14C, standard deviationΔ14C std dev±Yokoyama, YusukeDIC
9δ14Cδ14CYokoyama, YusukeDIC
10δ14C, standard deviationδ14C std dev±Yokoyama, YusukeDIC
11Activity of radiocarbon in percent of modern carbonActivitypMCYokoyama, YusukeDIC
12Activity of radiocarbon in percent of modern carbon, standard deviationActivity std dev±Yokoyama, YusukeDIC
13Specimen identificationSpec IDYokoyama, Yusuke
14Δ14CΔ14CYokoyama, Yusukefoot
15Δ14C, standard deviationΔ14C std dev±Yokoyama, Yusukefoot
16δ14Cδ14CYokoyama, Yusukefoot
17δ14C, standard deviationδ14C std dev±Yokoyama, Yusukefoot
18Activity of radiocarbon in percent of modern carbonActivitypMCYokoyama, Yusukefoot
19Activity of radiocarbon in percent of modern carbon, standard deviationActivity std dev±Yokoyama, Yusukefoot
20Δ14CΔ14CYokoyama, Yusukemantle
21Δ14C, standard deviationΔ14C std dev±Yokoyama, Yusukemantle
22δ14Cδ14CYokoyama, Yusukemantle
23δ14C, standard deviationδ14C std dev±Yokoyama, Yusukemantle
24Activity of radiocarbon in percent of modern carbonActivitypMCYokoyama, Yusukemantle
25Activity of radiocarbon in percent of modern carbon, standard deviationActivity std dev±Yokoyama, Yusukemantle
26Δ14CΔ14CYokoyama, Yusukeshell
27Δ14C, standard deviationΔ14C std dev±Yokoyama, Yusukeshell
28δ14Cδ14CYokoyama, Yusukeshell
29δ14C, standard deviationδ14C std dev±Yokoyama, Yusukeshell
30Activity of radiocarbon in percent of modern carbonActivitypMCYokoyama, Yusukeshell
31Activity of radiocarbon in percent of modern carbon, standard deviationActivity std dev±Yokoyama, Yusukeshell
32Δ14CΔ14CYokoyama, Yusukeplankton
33Δ14C, standard deviationΔ14C std dev±Yokoyama, Yusukeplankton
34δ14Cδ14CYokoyama, Yusukeplankton
35δ14C, standard deviationδ14C std dev±Yokoyama, Yusukeplankton
36Activity of radiocarbon in percent of modern carbonActivitypMCYokoyama, Yusukeplankton
37Activity of radiocarbon in percent of modern carbon, standard deviationActivity std dev±Yokoyama, Yusukeplankton
38DateDateYokoyama, Yusukesampling
39Sample IDSample IDYokoyama, Yusuke
40δ13Cδ13C‰ PDBYokoyama, Yusukefoot
41δ15Nδ15N‰ airYokoyama, Yusukefoot
42δ13Cδ13C‰ PDBYokoyama, Yusukemantle
43δ15Nδ15N‰ airYokoyama, Yusukemantle
44δ13Cδ13C‰ PDBYokoyama, Yusukeplankton
45δ14Nδ14NYokoyama, Yusukeplankton
46Temperature, waterTemp°CYokoyama, Yusuke
47Temperature, water, standard deviationTemp std dev±Yokoyama, Yusuke
48SalinitySalYokoyama, Yusuke
49Salinity, standard deviationSal std dev±Yokoyama, Yusuke
50Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYokoyama, Yusuke
51Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Yokoyama, Yusuke
52Alkalinity, totalATµmol/kgYokoyama, Yusuke
53pHpHYokoyama, YusukeCalculated using CO2calctotal scale
54pH, standard deviationpH std dev±Yokoyama, YusukeCalculated using CO2calctotal scale
55Carbon, inorganic, dissolvedDICµmol/kgYokoyama, YusukeCalculated using CO2calc
56Bicarbonate ion[HCO3]-µmol/kgYokoyama, YusukeCalculated using CO2calc
57Carbonate ion[CO3]2-µmol/kgYokoyama, YusukeCalculated using CO2calc
58Aragonite saturation stateOmega ArgYokoyama, YusukeCalculated using CO2calc
59Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
60pHpHYang, YanCalculated using seacarb after Nisumaa et al. (2010)total scale
61pH, standard deviationpH std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)total scale
62Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
63Carbon dioxide, standard deviationCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
64Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
65Fugacity of carbon dioxide in seawater, standard deviationfCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
66Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
67Bicarbonate ion, standard deviation[HCO3]- std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
68Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
69Carbonate ion, standard deviation[CO3]2- std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
70Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
71Carbon, inorganic, dissolved, standard deviationDIC std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
72Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
73Aragonite saturation state, standard deviationOmega Arg std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
74Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
75Calcite saturation state, standard deviationOmega Cal std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
6402 data points

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