Osma, Natalia; Latorre-Melín, Laura; Jacob, Bárbara; Contreras, Paulina Y; von Dassow, Peter; Vargas, Cristian A (2020): Seawater carbonate chemistry and phytoplankton community structure [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.924054
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Abstract:
The interplay of coastal oceanographic processes usually results in partial pressures of CO2 (pCO2) higher than expected from the equilibrium with the atmosphere and even higher than those expected by the end of the century. Although this is a well-known situation, the natural variability of seawater chemistry at the locations from which tested organisms or communities originate is seldom considered in ocean acidification experiments. In this work, we aimed to evaluate the role of the carbonate chemistry dynamics in shaping the response of coastal phytoplankton communities to increased pCO2 levels. The study was conducted at two coastal ecosystems off Chile, the Valdivia River estuary and the coastal upwelling ecosystem in the Arauco Gulf. We characterized the seasonal variability (winter/summer) of the hydrographic conditions, the carbonate system parameters, and the phytoplankton community structure at both sites. The results showed that carbonate chemistry dynamics in the estuary were mainly related to seasonal changes in freshwater discharges, with acidic and corrosive conditions dominating in winter. In the Arauco Gulf, these conditions were observed in summer, mainly associated with the upwelling of cold and high pCO2 (>1,000 μatm) waters. Diatoms dominated the phytoplankton communities at both sites, yet the one in Valdivia was more diverse. Only certain phytoplankton groups in this latter ecosystem showed a significant correlations with the carbonate system parameters. When the impact of elevated pCO2 levels was investigated by pCO2 manipulation experiments, we did not observe any significant effect on the biomass of either of the two communities. Changes in the phytoplankton species composition and abundance during the incubations were related to other factors, such as competition and growth phases. Our findings highlight the importance of the natural variability of coastal ecosystems and the potential for local adaptation in determining responses of coastal phytoplankton communities to increased pCO2 levels.
Keyword(s):
Supplement to:
Osma, Natalia; Latorre-Melín, Laura; Jacob, Bárbara; Contreras, Paulina Y; von Dassow, Peter; Vargas, Cristian A (2020): Response of Phytoplankton Assemblages From Naturally Acidic Coastal Ecosystems to Elevated pCO2. Frontiers in Marine Science, 7, https://doi.org/10.3389/fmars.2020.00323
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2019): seacarb: seawater carbonate chemistry with R. R package version 3.2.12. https://CRAN.R-project.org/package=seacarb
Project(s):
Coverage:
Median Latitude: -38.333300 * Median Longitude: -73.324950 * South-bound Latitude: -39.833300 * West-bound Longitude: -73.416600 * North-bound Latitude: -36.833300 * East-bound Longitude: -73.233300
Event(s):
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-10-20.
Parameter(s):
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
1224 data points
Data
1 Event | 2 Type (study) | 3 Location | 4 Treat | 5 DOE [day] | 6 Temp [°C] | 7 Sal | 8 pH (total scale) | 9 pH std dev [±] (total scale) | 10 Repl [#] | 11 pCO2water_SST_wet [µatm] | 12 pCO2 std dev [±] | 13 Repl [#] | 14 N/P | 15 N/P std dev [±] | 16 Repl [#] | 17 Si/N | 18 Si/N ratio std dev [±] | 19 Repl [#] | 20 Chl a [µg/l] | 21 Chl a std dev [±] | 22 Repl [#] | 23 Cells [#/ml] (Diatoms) | 24 Cells std dev [±] (Diatoms) | 25 Repl [#] | 26 Cells [#/ml] (Dinoflagellates) | 27 Cells std dev [±] (Dinoflagellates) | 28 Repl [#] | 29 Cells [#/ml] (Euglenophytes) | 30 Cells std dev [±] (Euglenophytes) | 31 Repl [#] | 32 Cells [#/ml] (Flagellates) | 33 Cells std dev [±] (Flagellates) | 34 Repl [#] | 35 Cells [#/ml] (Ciliates) | 36 Cells std dev [±] (Ciliates) | 37 Repl [#] | 38 Cells [#/ml] (Silicoflagellates) | 39 Cells std dev [±] (Silicoflagellates) | 40 Repl [#] | 41 Cells [#/ml] (Chlorophytes) | 42 Cells std dev [±] (Chlorophytes) | 43 Repl [#] | 44 Abund [%] (Thalassiosira spp.) | 45 Abund [%] (Aulacoseira granulata) | 46 Abund [%] (Chaetoceros spp.) | 47 Abund [%] (Thalassionema nitzschioides) | 48 Abund [%] (Skeletonema costatum) | 49 Abund [%] (Other diatoms) | 50 Abund [%] (Nitzschia spp.) | 51 Abund [%] (Pseudo-nitzschia delicatissima) | 52 CSC flag (Calculated using seacarb afte...) | 53 CO2 [µmol/kg] (Calculated using seacarb afte...) | 54 CO2 std dev [±] (Calculated using seacarb afte...) | 55 fCO2water_SST_wet [µatm] (Calculated using seacarb afte...) | 56 fCO2 std dev [±] (Calculated using seacarb afte...) | 57 [HCO3]- [µmol/kg] (Calculated using seacarb afte...) | 58 [HCO3]- std dev [±] (Calculated using seacarb afte...) | 59 [CO3]2- [µmol/kg] (Calculated using seacarb afte...) | 60 [CO3]2- std dev [±] (Calculated using seacarb afte...) | 61 DIC [µmol/kg] (Calculated using seacarb afte...) | 62 DIC std dev [±] (Calculated using seacarb afte...) | 63 AT [µmol/kg] (Calculated using seacarb afte...) | 64 AT std dev [±] (Calculated using seacarb afte...) | 65 Omega Arg (Calculated using seacarb afte...) | 66 Omega Arg std dev [±] (Calculated using seacarb afte...) | 67 Omega Cal (Calculated using seacarb afte...) | 68 Omega Cal std dev [±] (Calculated using seacarb afte...) |
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Valdivia_estuary | laboratory | Valdivia estuary | High pH | 0 | 11.2 | 25.0 | 7.93 | 0.00 | 4 | 161.96 | 0.00 | 4 | 9.35 | 0.00 | 4 | 11.63 | 0.00 | 4 | 978.90 | 0.00 | 1 | 39.53 | 0.00 | 1 | 2.57 | 0.00 | 1 | 0.00 | 0.00 | 1 | 0.07 | 0.00 | 1 | 0.48 | 0.00 | 1 | 0.18 | 0.00 | 1 | 17.84 | 0.00 | 1 | 15.0 | 50.1 | 6.6 | 15.4 | 0.0 | 13.0 | 21 | 7.21 | 0.03 | 161.35 | 0.00 | 577.25 | 10.32 | 24.41 | 0.95 | 608.87 | 10.79 | 660.67 | 11.36 | 0.38 | 0.02 | 0.62 | 0.04 | ||
Valdivia_estuary | laboratory | Valdivia estuary | High pH | 1 | 13.2 | 25.0 | 7.66 | 0.10 | 4 | 737.08 | 145.36 | 4 | 9.84 | 1.22 | 4 | 9.34 | 1.19 | 4 | 1024.93 | 0.03 | 4 | 40.00 | 13.30 | 3 | 13.10 | 1.20 | 3 | 0.90 | 0.80 | 3 | 12.80 | 11.60 | 3 | 3.60 | 2.80 | 3 | 0.00 | 0.00 | 3 | 0.00 | 0.00 | 3 | 7.5 | 2.2 | 13.6 | 26.4 | 21.3 | 29.0 | 21 | 30.77 | 6.07 | 734.35 | 144.82 | 1390.08 | 422.16 | 34.13 | 17.15 | 1454.98 | 442.43 | 1479.05 | 458.39 | 0.54 | 0.27 | 0.86 | 0.44 | ||
Valdivia_estuary | laboratory | Valdivia estuary | High pH | 2 | 11.9 | 25.0 | 7.64 | 0.01 | 4 | 760.36 | 36.36 | 4 | 8.79 | 1.64 | 4 | 7.31 | 1.39 | 4 | 1760.64 | 0.14 | 4 | 21 | 33.08 | 1.59 | 757.50 | 36.22 | 1382.62 | 77.43 | 30.82 | 2.37 | 1446.52 | 80.82 | 1463.37 | 81.68 | 0.48 | 0.04 | 0.78 | 0.07 | |||||||||||||||||||||||||||||
Valdivia_estuary | laboratory | Valdivia estuary | High pH | 3 | 12.9 | 25.0 | 7.61 | 0.01 | 4 | 857.09 | 15.34 | 4 | 14.28 | 2.22 | 4 | 10.50 | 0.66 | 4 | 2971.19 | 0.41 | 4 | 106.70 | 19.70 | 3 | 17.20 | 4.00 | 3 | 0.30 | 0.50 | 3 | 81.70 | 35.50 | 3 | 4.20 | 1.40 | 3 | 0.00 | 0.00 | 3 | 0.00 | 0.00 | 3 | 26.3 | 0.0 | 6.4 | 33.2 | 32.7 | 1.5 | 21 | 36.12 | 0.67 | 853.91 | 15.28 | 1443.80 | 49.38 | 31.23 | 1.96 | 1511.14 | 51.31 | 1524.67 | 52.82 | 0.49 | 0.04 | 0.79 | 0.06 | ||
Valdivia_estuary | laboratory | Valdivia estuary | High pH | 4 | 12.8 | 25.0 | 7.61 | 0.01 | 4 | 806.84 | 38.07 | 4 | 28.75 | 5.57 | 4 | 6.47 | 0.82 | 4 | 6160.36 | 2.14 | 4 | 21 | 34.11 | 1.62 | 803.84 | 37.93 | 1360.15 | 75.44 | 29.30 | 2.24 | 1423.56 | 78.73 | 1437.12 | 79.46 | 0.46 | 0.04 | 0.74 | 0.07 | |||||||||||||||||||||||||||||
Valdivia_estuary | laboratory | Valdivia estuary | High pH | 5 | 12.6 | 25.0 | 7.66 | 0.01 | 4 | 750.70 | 17.03 | 4 | 24.98 | 3.11 | 4 | 8.34 | 1.41 | 4 | 13579.63 | 4.38 | 4 | 518.20 | 161.30 | 3 | 28.60 | 13.80 | 3 | 3.90 | 6.80 | 3 | 1196.10 | 373.40 | 3 | 27.50 | 12.70 | 3 | 0.00 | 0.00 | 3 | 0.00 | 0.00 | 3 | 27.7 | 0.3 | 1.2 | 30.2 | 39.1 | 1.5 | 21 | 31.94 | 0.74 | 747.90 | 16.97 | 1422.01 | 52.52 | 34.11 | 2.20 | 1488.06 | 54.75 | 1510.59 | 56.37 | 0.53 | 0.04 | 0.86 | 0.07 | ||
Valdivia_estuary | laboratory | Valdivia estuary | Low pH | 0 | 11.2 | 25.0 | 7.93 | 0.00 | 4 | 161.96 | 0.00 | 4 | 9.35 | 0.00 | 4 | 11.63 | 0.00 | 4 | 978.90 | 0.00 | 1 | 39.53 | 0.00 | 1 | 2.57 | 0.00 | 1 | 0.00 | 0.00 | 1 | 0.07 | 0.00 | 1 | 0.48 | 0.00 | 1 | 0.18 | 0.00 | 1 | 17.84 | 0.00 | 1 | 15.0 | 50.1 | 6.6 | 15.4 | 0.0 | 13.0 | 21 | 7.21 | 0.03 | 161.35 | 0.00 | 577.25 | 10.32 | 24.41 | 0.95 | 608.87 | 10.79 | 660.67 | 11.36 | 0.38 | 0.02 | 0.62 | 0.04 | ||
Valdivia_estuary | laboratory | Valdivia estuary | Low pH | 1 | 13.2 | 25.0 | 7.98 | 0.03 | 4 | 341.82 | 25.28 | 4 | 12.27 | 1.81 | 4 | 7.63 | 1.67 | 4 | 1193.30 | 0.03 | 4 | 41.20 | 2.90 | 3 | 6.50 | 2.00 | 3 | 0.90 | 0.60 | 3 | 21.30 | 10.10 | 3 | 3.40 | 0.80 | 3 | 0.50 | 0.60 | 3 | 0.00 | 0.00 | 3 | 7.7 | 1.6 | 19.6 | 29.1 | 25.2 | 16.9 | 21 | 14.27 | 1.06 | 340.56 | 25.19 | 1346.87 | 138.41 | 69.09 | 11.15 | 1430.22 | 149.53 | 1525.51 | 160.99 | 1.08 | 0.18 | 1.75 | 0.29 | ||
Valdivia_estuary | laboratory | Valdivia estuary | Low pH | 2 | 11.9 | 25.0 | 8.03 | 0.02 | 4 | 298.66 | 13.26 | 4 | 11.77 | 1.28 | 4 | 8.57 | 0.36 | 4 | 1855.61 | 0.16 | 4 | 21 | 12.99 | 0.58 | 297.54 | 13.21 | 1333.10 | 88.54 | 72.94 | 7.98 | 1419.04 | 96.16 | 1522.17 | 104.39 | 1.14 | 0.14 | 1.84 | 0.22 | |||||||||||||||||||||||||||||
Valdivia_estuary | laboratory | Valdivia estuary | Low pH | 3 | 12.9 | 25.0 | 8.01 | 0.02 | 4 | 316.31 | 11.20 | 4 | 12.20 | 0.72 | 4 | 9.41 | 0.15 | 4 | 3149.52 | 0.41 | 4 | 187.80 | 64.80 | 3 | 10.40 | 8.30 | 3 | 0.90 | 1.60 | 3 | 189.00 | 32.00 | 3 | 16.00 | 3.60 | 3 | 0.00 | 0.00 | 3 | 0.00 | 0.00 | 3 | 10.2 | 0.0 | 14.0 | 23.4 | 44.7 | 7.8 | 21 | 13.33 | 0.48 | 315.14 | 11.16 | 1338.42 | 81.35 | 72.71 | 7.71 | 1424.46 | 88.64 | 1526.48 | 96.84 | 1.14 | 0.13 | 1.84 | 0.21 | ||
Valdivia_estuary | laboratory | Valdivia estuary | Low pH | 4 | 12.8 | 25.0 | 8.02 | 0.02 | 4 | 306.71 | 11.29 | 4 | 20.92 | 5.66 | 4 | 7.88 | 1.44 | 4 | 6317.95 | 1.10 | 4 | 21 | 12.97 | 0.48 | 305.57 | 11.25 | 1329.01 | 81.87 | 73.60 | 7.84 | 1415.57 | 89.29 | 1519.58 | 97.60 | 1.15 | 0.13 | 1.86 | 0.22 | |||||||||||||||||||||||||||||
Valdivia_estuary | laboratory | Valdivia estuary | Low pH | 5 | 12.6 | 25.0 | 8.08 | 0.03 | 4 | 254.92 | 31.76 | 4 | 25.32 | 2.94 | 4 | 8.63 | 0.84 | 4 | 15072.61 | 4.72 | 4 | 1100.30 | 90.00 | 3 | 76.60 | 67.60 | 3 | 0.00 | 0.00 | 3 | 2530.10 | 277.40 | 3 | 67.30 | 32.30 | 3 | 0.00 | 0.00 | 3 | 0.00 | 0.00 | 3 | 24.1 | 0.4 | 11.7 | 39.7 | 24.1 | 0.0 | 21 | 10.84 | 1.35 | 253.97 | 31.64 | 1270.11 | 182.35 | 80.13 | 15.23 | 1361.09 | 197.76 | 1478.94 | 212.49 | 1.25 | 0.25 | 2.02 | 0.40 | ||
Arauco_Gulf | laboratory | Arauco Gulf | High pH | 0 | 12.3 | 33.9 | 7.65 | 0.00 | 4 | 706.40 | 0.00 | 4 | 10.56 | 0.00 | 4 | 0.66 | 0.00 | 4 | 1910.00 | 0.00 | 1 | 42.10 | 0.00 | 1 | 0.01 | 0.00 | 1 | 79.7 | 2.4 | 8.6 | 7.1 | 2.0 | 21 | 28.84 | 0.13 | 703.76 | 0.00 | 1373.83 | 24.55 | 40.04 | 1.56 | 1442.71 | 25.34 | 1483.93 | 26.15 | 0.61 | 0.04 | 0.96 | 0.06 | ||||||||||||||||||
Arauco_Gulf | laboratory | Arauco Gulf | High pH | 1 | 13.0 | 34.3 | 7.35 | 0.02 | 4 | 1579.39 | 88.76 | 4 | 1760.00 | 0.18 | 3 | 68.70 | 25.90 | 4 | 0.04 | 0.09 | 4 | 88.3 | 3.0 | 2.6 | 4.2 | 1.9 | 21 | 62.94 | 3.55 | 1573.53 | 88.43 | 1533.61 | 114.75 | 23.24 | 2.66 | 1619.79 | 119.83 | 1596.23 | 120.02 | 0.36 | 0.04 | 0.56 | 0.07 | ||||||||||||||||||||||||
Arauco_Gulf | laboratory | Arauco Gulf | High pH | 2 | 12.5 | 34.3 | 7.34 | 0.01 | 4 | 1565.04 | 41.11 | 4 | 11.24 | 0.28 | 4 | 0.76 | 0.03 | 4 | 1340.00 | 0.11 | 3 | 48.00 | 9.30 | 4 | 0.00 | 0.00 | 4 | 93.9 | 1.5 | 0.7 | 3.9 | 0.0 | 21 | 63.36 | 1.69 | 1559.20 | 40.96 | 1490.33 | 58.48 | 21.64 | 1.42 | 1575.33 | 60.78 | 1549.16 | 60.99 | 0.33 | 0.03 | 0.52 | 0.04 | ||||||||||||||||||
Arauco_Gulf | laboratory | Arauco Gulf | High pH | 3 | 11.5 | 34.3 | 7.34 | 0.01 | 4 | 1519.00 | 42.32 | 4 | 910.00 | 0.11 | 4 | 34.90 | 8.70 | 4 | 0.00 | 0.00 | 4 | 99.6 | 0.0 | 0.2 | 0.2 | 0.0 | 21 | 63.48 | 1.79 | 1513.25 | 42.16 | 1456.83 | 58.74 | 20.35 | 1.35 | 1540.66 | 61.10 | 1512.62 | 61.14 | 0.31 | 0.03 | 0.49 | 0.04 | ||||||||||||||||||||||||
Arauco_Gulf | laboratory | Arauco Gulf | High pH | 4 | 11.2 | 34.3 | 7.32 | 0.00 | 4 | 1629.33 | 21.57 | 4 | 11.41 | 0.81 | 4 | 0.73 | 0.02 | 4 | 1010.00 | 0.04 | 2 | 23.90 | 6.70 | 4 | 0.02 | 0.04 | 4 | 99.8 | 0.0 | 0.2 | 0.0 | 0.0 | 21 | 68.76 | 0.96 | 1623.14 | 21.49 | 1495.53 | 33.26 | 19.72 | 0.81 | 1584.01 | 34.32 | 1549.27 | 34.17 | 0.30 | 0.02 | 0.47 | 0.03 | ||||||||||||||||||
Arauco_Gulf | laboratory | Arauco Gulf | High pH | 5 | 11.6 | 34.3 | 7.32 | 0.01 | 4 | 1707.50 | 32.91 | 4 | 560.00 | 0.16 | 3 | 15.00 | 1.80 | 4 | 0.00 | 0.00 | 4 | 99.4 | 0.0 | 0.5 | 0.1 | 0.0 | 21 | 71.13 | 1.41 | 1701.05 | 32.79 | 1562.78 | 54.61 | 20.93 | 1.32 | 1654.85 | 56.47 | 1619.11 | 56.95 | 0.32 | 0.02 | 0.50 | 0.04 | ||||||||||||||||||||||||
Arauco_Gulf | laboratory | Arauco Gulf | Low pH | 0 | 12.3 | 33.9 | 7.65 | 0.00 | 4 | 706.40 | 0.00 | 4 | 10.56 | 0.00 | 4 | 0.66 | 0.00 | 4 | 1910.00 | 0.00 | 1 | 42.10 | 0.00 | 1 | 0.01 | 0.00 | 1 | 79.7 | 2.4 | 8.6 | 7.1 | 2.0 | 21 | 28.84 | 0.13 | 703.76 | 0.00 | 1373.83 | 24.55 | 40.04 | 1.56 | 1442.71 | 25.34 | 1483.93 | 26.15 | 0.61 | 0.04 | 0.96 | 0.06 | ||||||||||||||||||
Arauco_Gulf | laboratory | Arauco Gulf | Low pH | 1 | 13.0 | 34.3 | 7.66 | 0.00 | 4 | 683.41 | 7.52 | 4 | 1610.00 | 0.17 | 4 | 43.80 | 3.75 | 4 | 0.02 | 0.04 | 4 | 89.1 | 4.0 | 0.5 | 5.4 | 1.0 | 21 | 27.23 | 0.32 | 680.88 | 7.49 | 1354.91 | 28.44 | 41.91 | 1.69 | 1424.06 | 29.54 | 1470.54 | 30.35 | 0.64 | 0.04 | 1.00 | 0.06 | ||||||||||||||||||||||||
Arauco_Gulf | laboratory | Arauco Gulf | Low pH | 2 | 12.5 | 34.3 | 7.70 | 0.03 | 4 | 597.47 | 47.62 | 4 | 10.99 | 0.26 | 4 | 0.72 | 0.04 | 4 | 1230.00 | 0.27 | 3 | 40.33 | 10.09 | 4 | 0.02 | 0.04 | 4 | 95.5 | 1.9 | 0.0 | 2.5 | 0.1 | 21 | 24.19 | 1.93 | 595.24 | 47.44 | 1303.39 | 139.43 | 43.36 | 7.12 | 1370.94 | 147.46 | 1424.25 | 154.14 | 0.66 | 0.11 | 1.04 | 0.18 | ||||||||||||||||||
Arauco_Gulf | laboratory | Arauco Gulf | Low pH | 3 | 11.5 | 34.3 | 7.72 | 0.01 | 4 | 557.04 | 21.97 | 4 | 1030.00 | 0.18 | 4 | 34.63 | 6.05 | 4 | 0.00 | 0.00 | 4 | 99.1 | 0.0 | 0.4 | 0.4 | 0.1 | 21 | 23.28 | 0.92 | 554.94 | 21.89 | 1281.56 | 62.85 | 42.94 | 3.09 | 1347.78 | 66.19 | 1402.05 | 68.45 | 0.65 | 0.06 | 1.03 | 0.09 | ||||||||||||||||||||||||
Arauco_Gulf | laboratory | Arauco Gulf | Low pH | 4 | 11.2 | 34.3 | 7.71 | 0.02 | 4 | 576.39 | 28.18 | 4 | 10.64 | 0.05 | 4 | 0.82 | 0.05 | 4 | 980.00 | 0.15 | 2 | 28.55 | 12.69 | 4 | 0.00 | 0.00 | 4 | 99.9 | 0.0 | 0.1 | 0.0 | 0.0 | 21 | 24.32 | 1.19 | 574.20 | 28.07 | 1298.69 | 90.26 | 42.03 | 4.68 | 1365.04 | 95.32 | 1416.35 | 99.74 | 0.64 | 0.08 | 1.01 | 0.12 | ||||||||||||||||||
Arauco_Gulf | laboratory | Arauco Gulf | Low pH | 5 | 11.6 | 34.3 | 7.70 | 0.03 | 4 | 625.82 | 37.69 | 4 | 520.00 | 0.03 | 3 | 20.15 | 9.81 | 4 | 0.06 | 0.08 | 4 | 99.8 | 0.0 | 0.0 | 0.2 | 0.0 | 21 | 26.07 | 1.57 | 623.46 | 37.55 | 1374.01 | 128.29 | 44.14 | 6.87 | 1444.22 | 135.70 | 1495.56 | 142.76 | 0.67 | 0.11 | 1.06 | 0.17 |