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Osma, Natalia; Latorre-Melín, Laura; Jacob, Bárbara; Contreras, Paulina Y; von Dassow, Peter; Vargas, Cristian A (2020): Seawater carbonate chemistry and phytoplankton community structure [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.924054

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Abstract:
The interplay of coastal oceanographic processes usually results in partial pressures of CO2 (pCO2) higher than expected from the equilibrium with the atmosphere and even higher than those expected by the end of the century. Although this is a well-known situation, the natural variability of seawater chemistry at the locations from which tested organisms or communities originate is seldom considered in ocean acidification experiments. In this work, we aimed to evaluate the role of the carbonate chemistry dynamics in shaping the response of coastal phytoplankton communities to increased pCO2 levels. The study was conducted at two coastal ecosystems off Chile, the Valdivia River estuary and the coastal upwelling ecosystem in the Arauco Gulf. We characterized the seasonal variability (winter/summer) of the hydrographic conditions, the carbonate system parameters, and the phytoplankton community structure at both sites. The results showed that carbonate chemistry dynamics in the estuary were mainly related to seasonal changes in freshwater discharges, with acidic and corrosive conditions dominating in winter. In the Arauco Gulf, these conditions were observed in summer, mainly associated with the upwelling of cold and high pCO2 (>1,000 μatm) waters. Diatoms dominated the phytoplankton communities at both sites, yet the one in Valdivia was more diverse. Only certain phytoplankton groups in this latter ecosystem showed a significant correlations with the carbonate system parameters. When the impact of elevated pCO2 levels was investigated by pCO2 manipulation experiments, we did not observe any significant effect on the biomass of either of the two communities. Changes in the phytoplankton species composition and abundance during the incubations were related to other factors, such as competition and growth phases. Our findings highlight the importance of the natural variability of coastal ecosystems and the potential for local adaptation in determining responses of coastal phytoplankton communities to increased pCO2 levels.
Keyword(s):
Biomass/Abundance/Elemental composition; Coast and continental shelf; Community composition and diversity; Containers and aquaria (20-1000 L or < 1 m**2); Entire community; Laboratory experiment; Pelagos; South Pacific; Temperate
Supplement to:
Osma, Natalia; Latorre-Melín, Laura; Jacob, Bárbara; Contreras, Paulina Y; von Dassow, Peter; Vargas, Cristian A (2020): Response of Phytoplankton Assemblages From Naturally Acidic Coastal Ecosystems to Elevated pCO2. Frontiers in Marine Science, 7, https://doi.org/10.3389/fmars.2020.00323
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2019): seacarb: seawater carbonate chemistry with R. R package version 3.2.12. https://CRAN.R-project.org/package=seacarb
Coverage:
Median Latitude: -38.333300 * Median Longitude: -73.324950 * South-bound Latitude: -39.833300 * West-bound Longitude: -73.416600 * North-bound Latitude: -36.833300 * East-bound Longitude: -73.233300
Event(s):
Arauco_Gulf  * Latitude: -36.833300 * Longitude: -73.233300 * Method/Device: Experiment (EXP)
Valdivia_estuary  * Latitude: -39.833300 * Longitude: -73.416600 * Method/Device: Experiment (EXP)
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-10-20.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
Event labelEventOsma, Natalia
TypeTypeOsma, Nataliastudy
LocationLocationOsma, Natalia
TreatmentTreatOsma, Natalia
Day of experimentDOEdayOsma, Natalia
Temperature, waterTemp°COsma, Natalia
SalinitySalOsma, Natalia
pHpHOsma, Nataliatotal scale
pH, standard deviationpH std dev±Osma, Nataliatotal scale
10 ReplicatesRepl#Osma, Natalia
11 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmOsma, Natalia
12 Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Osma, Natalia
13 ReplicatesRepl#Osma, Natalia
14 Nitrogen/Phosphorus ratioN/POsma, Natalia
15 Nitrogen/Phosphorus ratio, standard deviationN/P std dev±Osma, Natalia
16 ReplicatesRepl#Osma, Natalia
17 Silicon/Nitrogen, molar ratioSi/NOsma, Natalia
18 Silicon/Nitrogen ratio, standard deviationSi/N ratio std dev±Osma, Natalia
19 ReplicatesRepl#Osma, Natalia
20 Chlorophyll aChl aµg/lOsma, Natalia
21 Chlorophyll a, standard deviationChl a std dev±Osma, Natalia
22 ReplicatesRepl#Osma, Natalia
23 Cell densityCells#/mlOsma, NataliaDiatoms
24 Cell density, standard deviationCells std dev±Osma, NataliaDiatoms
25 ReplicatesRepl#Osma, Natalia
26 Cell densityCells#/mlOsma, NataliaDinoflagellates
27 Cell density, standard deviationCells std dev±Osma, NataliaDinoflagellates
28 ReplicatesRepl#Osma, Natalia
29 Cell densityCells#/mlOsma, NataliaEuglenophytes
30 Cell density, standard deviationCells std dev±Osma, NataliaEuglenophytes
31 ReplicatesRepl#Osma, Natalia
32 Cell densityCells#/mlOsma, NataliaFlagellates
33 Cell density, standard deviationCells std dev±Osma, NataliaFlagellates
34 ReplicatesRepl#Osma, Natalia
35 Cell densityCells#/mlOsma, NataliaCiliates
36 Cell density, standard deviationCells std dev±Osma, NataliaCiliates
37 ReplicatesRepl#Osma, Natalia
38 Cell densityCells#/mlOsma, NataliaSilicoflagellates
39 Cell density, standard deviationCells std dev±Osma, NataliaSilicoflagellates
40 ReplicatesRepl#Osma, Natalia
41 Cell densityCells#/mlOsma, NataliaChlorophytes
42 Cell density, standard deviationCells std dev±Osma, NataliaChlorophytes
43 ReplicatesRepl#Osma, Natalia
44 AbundanceAbund%Osma, NataliaThalassiosira spp.
45 AbundanceAbund%Osma, NataliaAulacoseira granulata
46 AbundanceAbund%Osma, NataliaChaetoceros spp.
47 AbundanceAbund%Osma, NataliaThalassionema nitzschioides
48 AbundanceAbund%Osma, NataliaSkeletonema costatum
49 AbundanceAbund%Osma, NataliaOther diatoms
50 AbundanceAbund%Osma, NataliaNitzschia spp.
51 AbundanceAbund%Osma, NataliaPseudo-nitzschia delicatissima
52 Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
53 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
54 Carbon dioxide, standard deviationCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
55 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
56 Fugacity of carbon dioxide in seawater, standard deviationfCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
57 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
58 Bicarbonate ion, standard deviation[HCO3]- std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
59 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
60 Carbonate ion, standard deviation[CO3]2- std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
61 Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
62 Carbon, inorganic, dissolved, standard deviationDIC std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
63 Alkalinity, totalATµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
64 Alkalinity, total, standard deviationAT std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
65 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
66 Aragonite saturation state, standard deviationOmega Arg std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
67 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
68 Calcite saturation state, standard deviationOmega Cal std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
1224 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Event

Type
(study)

Location

Treat

DOE [day]

Temp [°C]

Sal

pH
(total scale)

pH std dev [±]
(total scale)
10 
Repl [#]
11 
pCO2water_SST_wet [µatm]
12 
pCO2 std dev [±]
13 
Repl [#]
14 
N/P
15 
N/P std dev [±]
16 
Repl [#]
17 
Si/N
18 
Si/N ratio std dev [±]
19 
Repl [#]
20 
Chl a [µg/l]
21 
Chl a std dev [±]
22 
Repl [#]
23 
Cells [#/ml]
(Diatoms)
24 
Cells std dev [±]
(Diatoms)
25 
Repl [#]
26 
Cells [#/ml]
(Dinoflagellates)
27 
Cells std dev [±]
(Dinoflagellates)
28 
Repl [#]
29 
Cells [#/ml]
(Euglenophytes)
30 
Cells std dev [±]
(Euglenophytes)
31 
Repl [#]
32 
Cells [#/ml]
(Flagellates)
33 
Cells std dev [±]
(Flagellates)
34 
Repl [#]
35 
Cells [#/ml]
(Ciliates)
36 
Cells std dev [±]
(Ciliates)
37 
Repl [#]
38 
Cells [#/ml]
(Silicoflagellates)
39 
Cells std dev [±]
(Silicoflagellates)
40 
Repl [#]
41 
Cells [#/ml]
(Chlorophytes)
42 
Cells std dev [±]
(Chlorophytes)
43 
Repl [#]
44 
Abund [%]
(Thalassiosira spp.)
45 
Abund [%]
(Aulacoseira granulata)
46 
Abund [%]
(Chaetoceros spp.)
47 
Abund [%]
(Thalassionema nitzschioides)
48 
Abund [%]
(Skeletonema costatum)
49 
Abund [%]
(Other diatoms)
50 
Abund [%]
(Nitzschia spp.)
51 
Abund [%]
(Pseudo-nitzschia delicatissima)
52 
CSC flag
(Calculated using seacarb afte...)
53 
CO2 [µmol/kg]
(Calculated using seacarb afte...)
54 
CO2 std dev [±]
(Calculated using seacarb afte...)
55 
fCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
56 
fCO2 std dev [±]
(Calculated using seacarb afte...)
57 
[HCO3]- [µmol/kg]
(Calculated using seacarb afte...)
58 
[HCO3]- std dev [±]
(Calculated using seacarb afte...)
59 
[CO3]2- [µmol/kg]
(Calculated using seacarb afte...)
60 
[CO3]2- std dev [±]
(Calculated using seacarb afte...)
61 
DIC [µmol/kg]
(Calculated using seacarb afte...)
62 
DIC std dev [±]
(Calculated using seacarb afte...)
63 
AT [µmol/kg]
(Calculated using seacarb afte...)
64 
AT std dev [±]
(Calculated using seacarb afte...)
65 
Omega Arg
(Calculated using seacarb afte...)
66 
Omega Arg std dev [±]
(Calculated using seacarb afte...)
67 
Omega Cal
(Calculated using seacarb afte...)
68 
Omega Cal std dev [±]
(Calculated using seacarb afte...)
Valdivia_estuary laboratoryValdivia estuaryHigh pH011.225.07.930.004161.960.0049.350.00411.630.004978.900.00139.530.0012.570.0010.000.0010.070.0010.480.0010.180.00117.840.00115.050.16.615.40.013.0217.210.03161.350.00577.2510.3224.410.95608.8710.79660.6711.360.380.020.620.04
Valdivia_estuarylaboratoryValdivia estuaryHigh pH113.225.07.660.104737.08145.3649.841.2249.341.1941024.930.03440.0013.30313.101.2030.900.80312.8011.6033.602.8030.000.0030.000.0037.52.213.626.421.329.02130.776.07734.35144.821390.08422.1634.1317.151454.98442.431479.05458.390.540.270.860.44
Valdivia_estuarylaboratoryValdivia estuaryHigh pH211.925.07.640.014760.3636.3648.791.6447.311.3941760.640.1442133.081.59757.5036.221382.6277.4330.822.371446.5280.821463.3781.680.480.040.780.07
Valdivia_estuarylaboratoryValdivia estuaryHigh pH312.925.07.610.014857.0915.34414.282.22410.500.6642971.190.414106.7019.70317.204.0030.300.50381.7035.5034.201.4030.000.0030.000.00326.30.06.433.232.71.52136.120.67853.9115.281443.8049.3831.231.961511.1451.311524.6752.820.490.040.790.06
Valdivia_estuarylaboratoryValdivia estuaryHigh pH412.825.07.610.014806.8438.07428.755.5746.470.8246160.362.1442134.111.62803.8437.931360.1575.4429.302.241423.5678.731437.1279.460.460.040.740.07
Valdivia_estuarylaboratoryValdivia estuaryHigh pH512.625.07.660.014750.7017.03424.983.1148.341.41413579.634.384518.20161.30328.6013.8033.906.8031196.10373.40327.5012.7030.000.0030.000.00327.70.31.230.239.11.52131.940.74747.9016.971422.0152.5234.112.201488.0654.751510.5956.370.530.040.860.07
Valdivia_estuarylaboratoryValdivia estuaryLow pH011.225.07.930.004161.960.0049.350.00411.630.004978.900.00139.530.0012.570.0010.000.0010.070.0010.480.0010.180.00117.840.00115.050.16.615.40.013.0217.210.03161.350.00577.2510.3224.410.95608.8710.79660.6711.360.380.020.620.04
Valdivia_estuarylaboratoryValdivia estuaryLow pH113.225.07.980.034341.8225.28412.271.8147.631.6741193.300.03441.202.9036.502.0030.900.60321.3010.1033.400.8030.500.6030.000.0037.71.619.629.125.216.92114.271.06340.5625.191346.87138.4169.0911.151430.22149.531525.51160.991.080.181.750.29
Valdivia_estuarylaboratoryValdivia estuaryLow pH211.925.08.030.024298.6613.26411.771.2848.570.3641855.610.1642112.990.58297.5413.211333.1088.5472.947.981419.0496.161522.17104.391.140.141.840.22
Valdivia_estuarylaboratoryValdivia estuaryLow pH312.925.08.010.024316.3111.20412.200.7249.410.1543149.520.414187.8064.80310.408.3030.901.603189.0032.00316.003.6030.000.0030.000.00310.20.014.023.444.77.82113.330.48315.1411.161338.4281.3572.717.711424.4688.641526.4896.841.140.131.840.21
Valdivia_estuarylaboratoryValdivia estuaryLow pH412.825.08.020.024306.7111.29420.925.6647.881.4446317.951.1042112.970.48305.5711.251329.0181.8773.607.841415.5789.291519.5897.601.150.131.860.22
Valdivia_estuarylaboratoryValdivia estuaryLow pH512.625.08.080.034254.9231.76425.322.9448.630.84415072.614.7241100.3090.00376.6067.6030.000.0032530.10277.40367.3032.3030.000.0030.000.00324.10.411.739.724.10.02110.841.35253.9731.641270.11182.3580.1315.231361.09197.761478.94212.491.250.252.020.40
Arauco_Gulf laboratoryArauco GulfHigh pH012.333.97.650.004706.400.00410.560.0040.660.0041910.000.00142.100.0010.010.00179.72.48.67.12.02128.840.13703.760.001373.8324.5540.041.561442.7125.341483.9326.150.610.040.960.06
Arauco_GulflaboratoryArauco GulfHigh pH113.034.37.350.0241579.3988.7641760.000.18368.7025.9040.040.09488.33.02.64.21.92162.943.551573.5388.431533.61114.7523.242.661619.79119.831596.23120.020.360.040.560.07
Arauco_GulflaboratoryArauco GulfHigh pH212.534.37.340.0141565.0441.11411.240.2840.760.0341340.000.11348.009.3040.000.00493.91.50.73.90.02163.361.691559.2040.961490.3358.4821.641.421575.3360.781549.1660.990.330.030.520.04
Arauco_GulflaboratoryArauco GulfHigh pH311.534.37.340.0141519.0042.324910.000.11434.908.7040.000.00499.60.00.20.20.02163.481.791513.2542.161456.8358.7420.351.351540.6661.101512.6261.140.310.030.490.04
Arauco_GulflaboratoryArauco GulfHigh pH411.234.37.320.0041629.3321.57411.410.8140.730.0241010.000.04223.906.7040.020.04499.80.00.20.00.02168.760.961623.1421.491495.5333.2619.720.811584.0134.321549.2734.170.300.020.470.03
Arauco_GulflaboratoryArauco GulfHigh pH511.634.37.320.0141707.5032.914560.000.16315.001.8040.000.00499.40.00.50.10.02171.131.411701.0532.791562.7854.6120.931.321654.8556.471619.1156.950.320.020.500.04
Arauco_GulflaboratoryArauco GulfLow pH012.333.97.650.004706.400.00410.560.0040.660.0041910.000.00142.100.0010.010.00179.72.48.67.12.02128.840.13703.760.001373.8324.5540.041.561442.7125.341483.9326.150.610.040.960.06
Arauco_GulflaboratoryArauco GulfLow pH113.034.37.660.004683.417.5241610.000.17443.803.7540.020.04489.14.00.55.41.02127.230.32680.887.491354.9128.4441.911.691424.0629.541470.5430.350.640.041.000.06
Arauco_GulflaboratoryArauco GulfLow pH212.534.37.700.034597.4747.62410.990.2640.720.0441230.000.27340.3310.0940.020.04495.51.90.02.50.12124.191.93595.2447.441303.39139.4343.367.121370.94147.461424.25154.140.660.111.040.18
Arauco_GulflaboratoryArauco GulfLow pH311.534.37.720.014557.0421.9741030.000.18434.636.0540.000.00499.10.00.40.40.12123.280.92554.9421.891281.5662.8542.943.091347.7866.191402.0568.450.650.061.030.09
Arauco_GulflaboratoryArauco GulfLow pH411.234.37.710.024576.3928.18410.640.0540.820.054980.000.15228.5512.6940.000.00499.90.00.10.00.02124.321.19574.2028.071298.6990.2642.034.681365.0495.321416.3599.740.640.081.010.12
Arauco_GulflaboratoryArauco GulfLow pH511.634.37.700.034625.8237.694520.000.03320.159.8140.060.08499.80.00.00.20.02126.071.57623.4637.551374.01128.2944.146.871444.22135.701495.56142.760.670.111.060.17