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Giuliani, Maria Elisa; Filippini, Giulia; Nardi, Alessandro (2020): Seawater carbonate chemistry and the response to cadmium of stress-related genes in Mytilus galloprovincialis [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.923973

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Abstract:
Anthropogenic inputs of carbon dioxide in the atmosphere are driving ocean warming and acidification. The potential threat represented by these changes for marine species could be amplified in coastal areas, characterized by higher levels of pollutants. In addition, temperate organisms may exhibit a different seasonal tolerance to stressors influenced by fluctuations of environmental and physiological factors. In this study, Mediterranean mussels Mytilus galloprovincialis collected both in summer and winter were exposed to combinations of two temperatures (SST, seasonal surface temperature and SST+5 °C) and two levels of pH (8.20 and 7.40) in clean or cadmium contaminated seawater (20 μg/L Cd). mRNA levels of genes related to metal-induced stress response were investigated, including metallothionein mt-20, heat-shock protein hsp70, superoxide dismutase Cu/Zn-sod, catalase cat, glutathione peroxidase gpx1 and glutathione S-transferase gst-pi. To further elucidate if tissues with different physiological roles could exhibit different responsiveness, such analyses were carried out in digestive gland and in gills of exposed mussels. mt-20 mRNA increase after Cd-exposure was higher in the digestive gland than in the gills, with few modulations by temperature or pH only in the latter. Acidification, alone or in combination with other stressors, increased hsp70 mRNA, with seasonal- and tissue-specificities (higher in summer and in digestive gland). Among antioxidants, gpx1 mRNA was affected by Cd in both tissues and seasons, with further modulations due to pH and temperature variation tissue- and season-specific; in winter the combination of Cd, warming and acidification affected Cu/Zn-sod both in digestive gland and gills and cat only in gills, while weak seasonal variations were observed for gst-pi transcripts only in digestive gland. The overall results highlighted the importance of considering seasonality and responsiveness of different tissues to predict the effects of sudden changes in environmental parameters on responsiveness to and toxicity of chemicals in marine coastal organisms.
Keyword(s):
Animalia; Benthic animals; Benthos; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Gene expression (incl. proteomics); Inorganic toxins; Laboratory experiment; Mediterranean Sea; Mollusca; Mytilus galloprovincialis; Single species; Temperate; Temperature
Supplement to:
Giuliani, Maria Elisa; Filippini, Giulia; Nardi, Alessandro (2020): Season specific influence of projected ocean changes on the response to cadmium of stress-related genes in Mytilus galloprovincialis. Marine Environmental Research, 162, 105091, https://doi.org/10.1016/j.marenvres.2020.105091
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2019): seacarb: seawater carbonate chemistry with R. R package version 3.2.12. https://CRAN.R-project.org/package=seacarb
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-10-14.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
TypeTypeNardi, Alessandro
SpeciesSpeciesNardi, Alessandro
Registration number of speciesReg spec noNardi, Alessandro
Uniform resource locator/link to referenceURL refNardi, Alessandro
TreatmentTreatNardi, Alessandro
Sample code/labelSample labelNardi, Alessandro
Experiment durationExp durationdaysNardi, Alessandro
SeasonSeasonNardi, Alessandro
SalinitySalNardi, Alessandro
10 Salinity, standard deviationSal std dev±Nardi, Alessandro
11 Temperature, waterTemp°CNardi, Alessandro
12 Temperature, water, standard deviationTemp std dev±Nardi, Alessandro
13 pHpHNardi, Alessandro
14 pH, standard deviationpH std dev±Nardi, Alessandro
15 Alkalinity, totalATµmol/kgNardi, Alessandro
16 Alkalinity, total, standard deviationAT std dev±Nardi, Alessandro
17 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmNardi, Alessandro
18 Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Nardi, Alessandro
19 Calcite saturation stateOmega CalNardi, Alessandro
20 Calcite saturation state, standard deviationOmega Cal std dev±Nardi, Alessandro
21 Aragonite saturation stateOmega ArgNardi, Alessandro
22 Aragonite saturation state, standard deviationOmega Arg std dev±Nardi, Alessandro
23 SiteSiteNardi, AlessandroDG=digestive gland
24 CadmiumCdµg/gNardi, Alessandro
25 Cadmium, standard deviationCd std dev±Nardi, Alessandro
26 mRNA gene expression per total RNA massmRNA express/RNA#/µgNardi, Alessandro
27 mRNA gene expression, relative, standard deviationmRNA express std dev±Nardi, Alessandro
28 mRNA gene expression per total RNA massmRNA express/RNA#/µgNardi, Alessandro
29 mRNA gene expression, relative, standard deviationmRNA express std dev±Nardi, Alessandro
30 mRNA gene expression per total RNA massmRNA express/RNA#/µgNardi, Alessandro
31 mRNA gene expression, relative, standard deviationmRNA express std dev±Nardi, Alessandro
32 mRNA gene expression per total RNA massmRNA express/RNA#/µgNardi, Alessandro
33 mRNA gene expression, relative, standard deviationmRNA express std dev±Nardi, Alessandro
34 mRNA gene expression per total RNA massmRNA express/RNA#/µgNardi, Alessandro
35 mRNA gene expression, relative, standard deviationmRNA express std dev±Nardi, Alessandro
36 mRNA gene expression per total RNA massmRNA express/RNA#/µgNardi, Alessandro
37 mRNA gene expression, relative, standard deviationmRNA express std dev±Nardi, Alessandro
38 Carbonate system computation flagCSC flagNardi, Alessandro
39 pHpHNardi, Alessandro
40 Carbon dioxideCO2µmol/kgNardi, Alessandro
41 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmNardi, Alessandro
42 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmNardi, Alessandro
43 Bicarbonate ion[HCO3]-µmol/kgNardi, Alessandro
44 Carbonate ion[CO3]2-µmol/kgNardi, Alessandro
45 Carbon, inorganic, dissolvedDICµmol/kgNardi, Alessandro
46 Aragonite saturation stateOmega ArgNardi, Alessandro
47 Calcite saturation stateOmega CalNardi, Alessandro
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
1504 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Type

Species

Reg spec no

URL ref

Treat

Sample label

Exp duration [days]

Season

Sal
10 
Sal std dev [±]
11 
Temp [°C]
12 
Temp std dev [±]
13 
pH
14 
pH std dev [±]
15 
AT [µmol/kg]
16 
AT std dev [±]
17 
pCO2water_SST_wet [µatm]
18 
pCO2 std dev [±]
19 
Omega Cal
20 
Omega Cal std dev [±]
21 
Omega Arg
22 
Omega Arg std dev [±]
23 
Site
(DG=digestive gland)
24 
Cd [µg/g]
25 
Cd std dev [±]
26 
mRNA express/RNA [#/µg]
27 
mRNA express std dev [±]
28 
mRNA express/RNA [#/µg]
29 
mRNA express std dev [±]
30 
mRNA express/RNA [#/µg]
31 
mRNA express std dev [±]
32 
mRNA express/RNA [#/µg]
33 
mRNA express std dev [±]
34 
mRNA express/RNA [#/µg]
35 
mRNA express std dev [±]
36 
mRNA express/RNA [#/µg]
37 
mRNA express std dev [±]
38 
CSC flag
39 
pH
40 
CO2 [µmol/kg]
41 
fCO2water_SST_wet [µatm]
42 
pCO2water_SST_wet [µatm]
43 
[HCO3]- [µmol/kg]
44 
[CO3]2- [µmol/kg]
45 
DIC [µmol/kg]
46 
Omega Arg
47 
Omega Cal
laboratoryMytilus galloprovincialis (mollusk)151896marinespecies.orgCONTROLCTRL28summer370.519.950.108.210.042453.6251.5380.825.85.30.43.50.2DG2.891.91361817.913151456.50510575646.4701218963.2892650582.700776582.838764323.894049755.42054181705.2902012725.41574980.06623461.454268.0911.99373.35374.621913.52219.992145.53.385.18
laboratoryMytilus galloprovincialis (mollusk)151896marinespecies.orgCONTROL, CdCd28summer370.520.000.108.190.042390.5354.1410.630.95.10.43.30.3DG33.153.705678403.139786262.7329403536.2042561644.956903734.044149329.441956106.4793409581.4030028077.337405600.14381031.86224634.379268.0712.33384.47385.781880.42206.752099.53.174.87
laboratoryMytilus galloprovincialis (mollusk)151896marinespecies.orgREDUCED pHA28summer370.519.980.067.420.042557.3183.72897.6183.81.00.10.70.1DG3.011.08382823.69095165.00718089739.3601807103.0431833463.075906590.5111936686.1090315338.15230333352.06460156324.342351880.37143072.340267.3094.512946.492956.562446.4645.622586.60.701.07
laboratoryMytilus galloprovincialis (mollusk)151896marinespecies.orgHIGHER TEMPERATUREW28summer370.524.800.138.150.062325.4267.7468.147.95.40.43.60.3DG2.831.15114447.6066767.34315223641.8002605689.0122044589.845381675.029960708.6921236666.6793086430.0752214802.62795765.2558133.098268.0212.09428.20429.581805.32210.492027.93.294.98
laboratoryMytilus galloprovincialis (mollusk)151896marinespecies.orgREDUCED pH, CdA-Cd28summer370.519.950.067.410.042556.7479.02928.2144.41.00.10.70.1DG34.539.4810311485.3501854023.87121022570.8603460805.5382693730.779859211.1321665657.2640293901.8606097933.193123704.846179910.44940195.855267.2996.893018.093028.402448.4544.562589.90.681.05
laboratoryMytilus galloprovincialis (mollusk)151896marinespecies.orgHIGHER TEMPERATURE, CdW-Cd28summer370.524.830.088.140.042517.9206.9477.444.65.20.43.50.2DG38.0310.6212655624.2503651512.99917725175.5502832544.4843756112.6661564671.5391252527.8570304316.25230138924.0991034373.670121606.69719800.965268.0113.51478.61480.141971.03224.772209.33.515.32
laboratoryMytilus galloprovincialis (mollusk)151896marinespecies.orgREDUCED pH, HIGHER TEMPERATUREA-W28summer370.524.760.187.420.032721.4215.73100.1241.71.20.10.80.1DG5.080.12756516.901124008.40430955102.7405765526.8012002692.6491326222.4972167674.9820512166.0749091365.6241521147.551151749.38153164.400267.2993.133294.413305.022587.2756.102736.50.881.33
laboratoryMytilus galloprovincialis (mollusk)151896marinespecies.orgREDUCED pH, HIGHER TEMPERATURE, CdA-W-Cd28summer370.524.870.167.430.042504.2182.02993.7186.71.30.10.90.1DG39.805.2323111822.09010896885.03031228516.3509010728.2921499151.210519190.9001486520.0000347369.42570117362.874609573.498345842.32191319.046267.3083.462960.712970.232375.9552.892512.30.831.25
laboratoryMytilus galloprovincialis (mollusk)151896marinespecies.orgCONTROLCTRL28Winter370.59.950.118.180.033283.288.8368.926.26.20.53.90.3DG0.520.0429638.99915727.45737917635.6807503990.929333980.100209535.473531570.435070879.38591305003.4753046487.243204437.99951142.686268.0822.42515.98517.982779.39213.703015.53.215.03
laboratoryMytilus galloprovincialis (mollusk)151896marinespecies.orgCONTROL, CdCd28Winter370.59.970.068.160.033334.2102.6411.835.86.10.53.90.2DG16.401.9215046005.4906373468.99642392072.7105004161.100863600.803377982.2802260995.5450991840.84490193677.2815049616.602710016.127211833.674268.0624.00552.65554.782842.79208.923075.73.134.92
laboratoryMytilus galloprovincialis (mollusk)151896marinespecies.orgREDUCED pHA28Winter370.510.540.087.400.053364.1112.92882.2363.81.30.20.80.1DG0.520.09213897.12393873.57579919140.10018951866.3502293875.857613031.8092260382.5080642444.03980674363.09020259147.327762206.13284834.693267.30156.773678.763692.943264.2342.493463.50.641.00
laboratoryMytilus galloprovincialis (mollusk)151896marinespecies.orgHIGHER TEMPERATUREW28Winter370.514.950.128.170.033378.4121.2416.834.57.20.54.70.4DG0.520.0812365.8846137.26920740668.7002929181.88154884.23830928.035236648.948740327.69045284161.54960129853.861160462.41960623.651268.0620.92563.88565.932796.62249.063066.63.775.86
laboratoryMytilus galloprovincialis (mollusk)151896marinespecies.orgREDUCED pH, CdA-Cd28Winter370.510.040.157.390.023360.636.82860.9207.21.20.10.80.1DG20.673.162138449.739674598.62029068794.0305121896.530399753.317145623.110347094.364588715.38943216944.1992080306.352318954.12196303.247267.29162.093741.743756.253264.5840.833467.50.610.96
laboratoryMytilus galloprovincialis (mollusk)151896marinespecies.orgHIGHER TEMPERATURE, CdW-Cd28Winter370.515.020.118.170.033350.5164.9403.553.17.30.54.70.3DG30.493.071550605.689897357.85843847216.12012184128.740416041.643226380.333748201.2997381349.3884075192.8014020124.027125975.44320053.808268.0620.71559.37561.402771.86247.433040.03.755.82
laboratoryMytilus galloprovincialis (mollusk)151896marinespecies.orgREDUCED pH, HIGHER TEMPERATUREA-W28Winter370.514.980.057.390.043354.580.12916.3288.71.50.21.00.1DG0.520.1071145.73917999.52734530596.3809277261.7381730141.712647389.2461049768.8360283422.37620124834.8849024393.108421308.26362799.792267.28146.253945.703960.073242.4447.913436.60.731.13
laboratoryMytilus galloprovincialis (mollusk)151896marinespecies.orgREDUCED pH, HIGHER TEMPERATURE, CdA-W-Cd28Winter370.514.920.067.390.023326.567.12886.4174.11.50.11.00.1DG33.404.371835840.096327870.40132149579.7808377285.988703314.539196059.2551121573.3870464342.91860114741.5665037818.056303618.56081585.878267.28145.153908.933923.173215.4247.433408.00.721.12
laboratoryMytilus galloprovincialis (mollusk)151896marinespecies.orgCONTROLCTRL28summer370.519.950.108.210.042453.6251.5380.825.85.30.43.50.2Gill1.040.62236636.72790507.598101216346.90014547601.0401870692.965599023.3142657492.4040562227.7580095252.3793115142.381101834.12942180.723268.0911.99373.35374.621913.52219.992145.53.385.18
laboratoryMytilus galloprovincialis (mollusk)151896marinespecies.orgCONTROL, CdCd28summer370.520.000.108.190.042390.5354.1410.630.95.10.43.30.3Gill14.221.044518624.917927200.997128944354.8005857326.0152483489.185790004.4511741513.7030183057.1334061887.122856036.071273947.00046336.000268.0712.33384.47385.781880.42206.752099.53.174.87
laboratoryMytilus galloprovincialis (mollusk)151896marinespecies.orgREDUCED pHA28summer370.519.980.067.420.042557.3183.72897.6183.81.00.10.70.1Gill0.550.26121420.23768449.816110953992.20013786893.4201541527.625958904.7692168117.839085263.65675140911.9283037326.479206375.00052534.000267.3094.512946.492956.562446.4645.622586.60.701.07
laboratoryMytilus galloprovincialis (mollusk)151896marinespecies.orgHIGHER TEMPERATUREW28summer370.524.800.138.150.062325.4267.7468.147.95.40.43.60.3Gill0.380.1260051.20118582.45192671264.8606359704.8061970891.196343021.7141783248.5050252754.1417044198.118536944.220196667.000125580.000268.0212.09428.20429.581805.32210.492027.93.294.98
laboratoryMytilus galloprovincialis (mollusk)151896marinespecies.orgREDUCED pH, CdA-Cd28summer370.519.950.067.410.042556.7479.02928.2144.41.00.10.70.1Gill19.472.401885652.238895058.10161409619.24013648126.6702676477.756325228.6902519193.1600133296.1838075043.7195612884.916441028.196113247.758267.2996.893018.093028.402448.4544.562589.90.681.05
laboratoryMytilus galloprovincialis (mollusk)151896marinespecies.orgHIGHER TEMPERATURE, CdW-Cd28summer370.524.830.088.140.042517.9206.9477.444.65.20.43.50.2Gill18.788.933080075.7201810084.078102200542.40013642275.6802596804.440650931.5641778841.6790146555.7406053347.815279196.882169583.00050878.000268.0113.51478.61480.141971.03224.772209.33.515.32
laboratoryMytilus galloprovincialis (mollusk)151896marinespecies.orgREDUCED pH, HIGHER TEMPERATUREA-W28summer370.524.760.187.420.032721.4215.73100.1241.71.20.10.80.1Gill0.330.1373075.62237543.751118500674.20012004813.1801518990.373598426.5613158501.2750551586.5824065850.944744477.385222742.37716459.188267.2993.133294.413305.022587.2756.102736.50.881.33
laboratoryMytilus galloprovincialis (mollusk)151896marinespecies.orgREDUCED pH, HIGHER TEMPERATURE, CdA-W-Cd28summer370.524.870.167.430.042504.2182.02993.7186.71.30.10.90.1Gill15.994.401019925.922437749.595123614185.30010443822.8901907914.489597708.1802527541.5270403641.5527095437.0243131059.827392830.663142519.103267.3083.462960.712970.232375.9552.892512.30.831.25
laboratoryMytilus galloprovincialis (mollusk)151896marinespecies.orgCONTROLCTRL28Winter370.59.950.118.180.033283.288.8368.926.26.20.53.90.3Gill0.220.05171652.33454609.995100549432.0008611358.405940148.32086833.5262273193.5640233649.35990374193.8058016453.713257062.52530477.597268.0822.42515.98517.982779.39213.703015.53.215.03
laboratoryMytilus galloprovincialis (mollusk)151896marinespecies.orgCONTROL, CdCd28Winter370.59.970.068.160.033334.2102.6411.835.86.10.53.90.2Gill6.791.112908888.989885436.26777403185.47020850945.190775268.529292883.039888479.700871371.96921419517.8349053573.995527395.011148061.641268.0624.00552.65554.782842.79208.923075.73.134.92
laboratoryMytilus galloprovincialis (mollusk)151896marinespecies.orgREDUCED pHA28Winter370.510.540.087.400.053364.1112.92882.2363.81.30.20.80.1Gill0.220.081297.001565.567170943784.70028902019.240637010.586256975.3001418634.0350273365.08310239709.1240035869.5131134123.413256454.992267.30156.773678.763692.943264.2342.493463.50.641.00
laboratoryMytilus galloprovincialis (mollusk)151896marinespecies.orgHIGHER TEMPERATUREW28Winter370.514.950.128.170.033378.4121.2416.834.57.20.54.70.4Gill0.220.071254.219447.401118794033.10011884226.4801594944.904274736.4011514827.4360276394.80570230729.6233034898.854783912.090326686.039268.0620.92563.88565.932796.62249.063066.63.775.86
laboratoryMytilus galloprovincialis (mollusk)151896marinespecies.orgREDUCED pH, CdA-Cd28Winter370.510.040.157.390.023360.636.82860.9207.21.20.10.80.1Gill5.210.90321023.50774863.14577231601.69014148268.540701085.890234298.288634671.3316223845.08170689032.0580060743.292344671.412150599.544267.29162.093741.743756.253264.5840.833467.50.610.96
laboratoryMytilus galloprovincialis (mollusk)151896marinespecies.orgHIGHER TEMPERATURE, CdW-Cd28Winter370.515.020.118.170.033350.5164.9403.553.17.30.54.70.3Gill16.174.301699851.6951203203.010113913700.80022191592.670977150.774312218.0091478891.0440316850.62350338006.3923081346.942425594.010133076.016268.0620.71559.37561.402771.86247.433040.03.755.82
laboratoryMytilus galloprovincialis (mollusk)151896marinespecies.orgREDUCED pH, HIGHER TEMPERATUREA-W28Winter370.514.980.057.390.043354.580.12916.3288.71.50.21.00.1Gill0.220.1537774.57415742.961174544146.10032502048.430891202.988283062.4103084595.8160943560.04630663298.09540264531.4311259929.534552200.716267.28146.253945.703960.073242.4447.913436.60.731.13
laboratoryMytilus galloprovincialis (mollusk)151896marinespecies.orgREDUCED pH, HIGHER TEMPERATURE, CdA-W-Cd28Winter370.514.920.067.390.023326.567.12886.4174.11.50.11.00.1Gill19.381.261418713.713722786.63998172211.2006862037.7791750998.817186933.800923447.4453312242.23800196996.3046035191.129435163.67685117.302267.28145.153908.933923.173215.4247.433408.00.721.12