Citation:

PANGAEA.923815

Name: Seawater carbonate chemistry and survival and growth of four agglutinating foraminifera
Published: 2017
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Benthos; Bottles or small containers/Aquaria (<20 L); Chromista; Coast and continental shelf; Foraminifera; Growth/Morphology; Heterotrophic prokaryotes; Laboratory experiment; Miliammina fusca; Mortality/Survival; North Pacific; Oxygen; Single species; Species interaction; Spiroplectammina biformis; Temperate; Textularia tenuissima; Trochammina inflata

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Abstract:

Agglutinated foraminifera create a shell by assembling particles from the sediment and comprise a significant part of the foraminiferal fauna. Despite their high abundance and diversity, their response to environmental perturbations and climate change is relatively poorly studied. Here we present results from a culture experiment with four different species of agglutinating foraminifera incubated in artificial substrate and exposed to different pCO2 conditions, in either dysoxic or oxic settings. We observed species-specific reactions (i.e., reduced or increased chamber formation rates) to dysoxia and/or acidification. While chamber addition and/or survival rates of Miliammina fusca and Trochammina inflata were negatively impacted by either dysoxia or acidification, respectively, Textularia tenuissima and Spiroplectammina biformis had the highest survivorship and chamber addition rates with combined high pCO2 (2000 ppm) and low O2 (0.7 ml/l) conditions. The differential response of these species indicates that not all agglutinating foraminifera are well-adapted to conditions induced by predicted climate change, which may result in a shift in foraminiferal community composition.

Keyword(s):

Benthos; Bottles or small containers/Aquaria (<20 L); Chromista; Coast and continental shelf; Foraminifera; Growth/Morphology; Heterotrophic prokaryotes; Laboratory experiment; Miliammina fusca; Mortality/Survival; North Pacific; Oxygen; Single species; Species interaction; Spiroplectammina biformis; Temperate; Textularia tenuissima; Trochammina inflata

Supplement to:

van Dijk, Inge; Bernhard, Joan M; de Nooijer, Lennart Jan; Nehrke, Gernot; Wit, Johannes C; Reichart, Gert-Jan (2017): Combined impacts of ocean acidification and dysoxia on survival and growth of four agglutinating foraminifera. Journal of Foraminiferal Research, 47(3), 294-303, https://doi.org/10.2113/gsjfr.47.3.294

Further details:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2019): seacarb: seawater carbonate chemistry with R. R package version 3.2.12. https://CRAN.R-project.org/package=seacarb

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Coverage:

Latitude: 41.000000 * Longitude: -70.000000

Date/Time Start: 2013-05-01T00:00:00 * Date/Time End: 2013-05-31T00:00:00

Event(s):

Mudpatch * Latitude: 41.000000 * Longitude: -70.000000 * Date/Time Start: 2013-05-01T00:00:00 * Date/Time End: 2013-05-31T00:00:00 * Method/Device: Experiment (EXP)

Comment:

In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-09-27.

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Type	Type		van Dijk, Inge		study
2	Species	Species		van Dijk, Inge
3	Registration number of species	Reg spec no		van Dijk, Inge
4	Uniform resource locator/link to reference	URL ref		van Dijk, Inge		WoRMS Aphia ID
5	Treatment	Treat		van Dijk, Inge
6	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	van Dijk, Inge
7	Oxygen, dissolved	DO	ml/l	van Dijk, Inge
8	Percentage	Perc	%	van Dijk, Inge		Live, grown
9	Percentage	Perc	%	van Dijk, Inge		Live, not grown
10	Percentage	Perc	%	van Dijk, Inge		Dead, grown
11	Percentage	Perc	%	van Dijk, Inge		Dead, not grown
12	Survival	Survival	%	van Dijk, Inge
13	Percentage	Perc	%	van Dijk, Inge		Specimens grown
14	Chamber number	Chamber no		van Dijk, Inge		addition
15	Number of specimens	No spec	#	van Dijk, Inge		start
16	Number of specimens	No spec	#	van Dijk, Inge		end
17	Salinity	Sal		van Dijk, Inge
18	Temperature, water	Temp	°C	van Dijk, Inge
19	Temperature, water, standard deviation	Temp std dev	±	van Dijk, Inge
20	Carbon, inorganic, dissolved	DIC	µmol/kg	van Dijk, Inge
21	Carbon, inorganic, dissolved, standard deviation	DIC std dev	±	van Dijk, Inge
22	Alkalinity, total	AT	µmol/kg	van Dijk, Inge	Potentiometric titration
23	Alkalinity, total, standard deviation	AT std dev	±	van Dijk, Inge	Potentiometric titration
24	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	van Dijk, Inge	Calculated using CO2SYS
25	Carbonate ion	[CO3]2-	µmol/kg	van Dijk, Inge	Calculated using CO2SYS
26	pH	pH		van Dijk, Inge	Calculated using CO2SYS	total scale
27	Calcite saturation state	Omega Cal		van Dijk, Inge	Calculated using CO2SYS
28	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
29	pH	pH		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	total scale
30	pH, standard deviation	pH std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
31	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
32	Carbon dioxide, standard deviation	CO2 std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
33	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
34	Fugacity of carbon dioxide in seawater, standard deviation	fCO2 std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
35	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
36	Partial pressure of carbon dioxide, standard deviation	pCO2 std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
37	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
38	Bicarbonate ion, standard deviation	[HCO3]- std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
39	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
40	Carbonate ion, standard deviation	[CO3]2- std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
41	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
42	Aragonite saturation state, standard deviation	Omega Arg std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
43	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
44	Calcite saturation state, standard deviation	Omega Cal std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

586 data points

Data

Download dataset as tab-delimited text — use the following character encoding:

1 Type (study)	2 Species	3 Reg spec no	4 URL ref (WoRMS Aphia ID)	5 Treat	6 pCO2water_SST_wet [µatm]	7 DO [ml/l]	8 Perc [%] (Live, grown)	9 Perc [%] (Live, not grown)	10 Perc [%] (Dead, grown)	11 Perc [%] (Dead, not grown)	12 Survival [%]	13 Perc [%] (Specimens grown)	14 Chamber no (addition)	15 No spec [#] (start)	16 No spec [#] (end)	17 Sal	18 Temp [°C]	19 Temp std dev [±]	20 DIC [µmol/kg]	21 DIC std dev [±]	22 AT [µmol/kg] (Potentiometric titration)	23 AT std dev [±] (Potentiometric titration)	24 pCO2water_SST_wet [µatm] (Calculated using CO2SYS)	25 [CO3]2- [µmol/kg] (Calculated using CO2SYS)	26 pH (total scale, Calculated using...)	27 Omega Cal (Calculated using CO2SYS)	28 CSC flag (Calculated using seacarb afte...)	29 pH (total scale, Calculated using...)	30 pH std dev [±] (Calculated using seacarb afte...)	31 CO2 [µmol/kg] (Calculated using seacarb afte...)	32 CO2 std dev [±] (Calculated using seacarb afte...)	33 fCO2water_SST_wet [µatm] (Calculated using seacarb afte...)	34 fCO2 std dev [±] (Calculated using seacarb afte...)	35 pCO2water_SST_wet [µatm] (Calculated using seacarb afte...)	36 pCO2 std dev [±] (Calculated using seacarb afte...)	37 [HCO3]- [µmol/kg] (Calculated using seacarb afte...)	38 [HCO3]- std dev [±] (Calculated using seacarb afte...)	39 [CO3]2- [µmol/kg] (Calculated using seacarb afte...)	40 [CO3]2- std dev [±] (Calculated using seacarb afte...)	41 Omega Arg (Calculated using seacarb afte...)	42 Omega Arg std dev [±] (Calculated using seacarb afte...)	43 Omega Cal (Calculated using seacarb afte...)	44 Omega Cal std dev [±] (Calculated using seacarb afte...)
laboratory	Miliammina fusca (protists)	114064	marinespecies.org	Control	400	7.1	14.6	4.2	4.2	77.1	18.8	18.80	2.3	63	48	35	7	0.1	2059.1	3.1	2183.20	4.20	471.11	95.62	8.06	2.28	15	7.96	0.02	22.81	0.99	469.57	20.51	471.46	20.60	1940.70	5.03	95.59	3.34	1.44	0.08	2.28	0.13
laboratory	Miliammina fusca (protists)	114064	marinespecies.org	Dysoxia	400	0.7	1.6	12.9	6.5	79.0	14.5	8.10	1.2	63	62	35	7	0.1	2171.1	1.2	2294.50	0.04	511.13	98.16	8.05	2.34	15	7.95	0.01	24.76	0.66	509.70	13.98	511.75	14.03	2048.25	2.60	98.10	1.72	1.48	0.07	2.34	0.12
laboratory	Miliammina fusca (protists)	114064	marinespecies.org	OA	2000	5.9	7.7	13.5	5.8	73.1	21.2	13.50	2.1	63	52	35	7	0.1	2198.0	1.3	2163.61	3.00	1691.74	30.75	7.52	0.73	15	7.43	0.01	81.86	2.24	1685.33	47.12	1692.12	47.31	2085.38	2.14	30.75	1.17	0.46	0.03	0.73	0.04
laboratory	Miliammina fusca (protists)	114064	marinespecies.org	Dual-stressor	2000	0.7	1.5	10.4	6.0	82.1	11.9	7.50	1.4	73	67	35	7	0.1	2381.4	2.4	2349.34	1.20	1748.26	35.00	7.55	0.83	15	7.45	0.01	84.59	1.94	1741.48	41.19	1748.49	41.36	2261.80	2.37	35.01	1.16	0.53	0.03	0.83	0.05
laboratory	Miliammina fusca (protists)	114064	marinespecies.org	Pre-Indus.	275	4.9	2.8	4.2	12.5	80.6	6.9	15.30	1.3	73	72	35	7	0.1	1908.0	0.8	2124.63	0.02	247.63	147.64	8.30	3.52	15	8.19	0.01	11.99	0.35	246.92	7.28	247.92	7.31	1748.45	2.64	147.55	2.24	2.23	0.11	3.52	0.17
laboratory	Trochammina inflata (protists)	114348	marinespecies.org	Control	400	7.1					5.9			57	57	35	7	0.1	2059.1	3.1	2183.20	4.20	471.11	95.62	8.06	2.28	15	7.96	0.02	22.81	0.99	469.57	20.51	471.46	20.60	1940.70	5.03	95.59	3.34	1.44	0.08	2.28	0.13
laboratory	Trochammina inflata (protists)	114348	marinespecies.org	Dysoxia	400	0.7					14.9			50	47	35	7	0.1	2171.1	1.2	2294.50	0.04	511.13	98.16	8.05	2.34	15	7.95	0.01	24.76	0.66	509.70	13.98	511.75	14.03	2048.25	2.60	98.10	1.72	1.48	0.07	2.34	0.12
laboratory	Trochammina inflata (protists)	114348	marinespecies.org	OA	2000	5.9					0.0			30	29	35	7	0.1	2198.0	1.3	2163.61	3.00	1691.74	30.75	7.52	0.73	15	7.43	0.01	81.86	2.24	1685.33	47.12	1692.12	47.31	2085.38	2.14	30.75	1.17	0.46	0.03	0.73	0.04
laboratory	Trochammina inflata (protists)	114348	marinespecies.org	Dual-stressor	2000	0.7					13.6			45	44	35	7	0.1	2381.4	2.4	2349.34	1.20	1748.26	35.00	7.55	0.83	15	7.45	0.01	84.59	1.94	1741.48	41.19	1748.49	41.36	2261.80	2.37	35.01	1.16	0.53	0.03	0.83	0.05
laboratory	Trochammina inflata (protists)	114348	marinespecies.org	Pre-Indus.	275	4.9					0.0			45	45	35	7	0.1	1908.0	0.8	2124.63	0.02	247.63	147.64	8.30	3.52	15	8.19	0.01	11.99	0.35	246.92	7.28	247.92	7.31	1748.45	2.64	147.55	2.24	2.23	0.11	3.52	0.17
laboratory	Spiroplectammina biformis (protists)	114226	marinespecies.org	Control	400	7.1	0.0	0.0	11.1	88.9	0.0	46.90	3.9	32	32	35	7	0.1	2059.1	3.1	2183.20	4.20	471.11	95.62	8.06	2.28	15	7.96	0.02	22.81	0.99	469.57	20.51	471.46	20.60	1940.70	5.03	95.59	3.34	1.44	0.08	2.28	0.13
laboratory	Spiroplectammina biformis (protists)	114226	marinespecies.org	Dual-stressor	2000	0.7	9.5	0.0	66.7	23.8	9.5	76.20	8.9	25	21	35	7	0.1	2381.4	2.4	2349.34	1.20	1748.26	35.00	7.55	0.83	15	7.45	0.01	84.59	1.94	1741.48	41.19	1748.49	41.36	2261.80	2.37	35.01	1.16	0.53	0.03	0.83	0.05
laboratory	Textularia tenuissima (protists)	114287	marinespecies.org	Control	400	7.1	0.0	0.0	11.1	88.9	0.0	11.11	1.7	25	18	35	7	0.1	2059.1	3.1	2183.20	4.20	471.11	95.62	8.06	2.28	15	7.96	0.02	22.81	0.99	469.57	20.51	471.46	20.60	1940.70	5.03	95.59	3.34	1.44	0.08	2.28	0.13
laboratory	Textularia tenuissima (protists)	114287	marinespecies.org	Dual-stressor	2000	0.7	4.3	4.3	34.8	56.5	8.7	39.10	5.9	25	23	35	7	0.1	2381.4	2.4	2349.34	1.20	1748.26	35.00	7.55	0.83	15	7.45	0.01	84.59	1.94	1741.48	41.19	1748.49	41.36	2261.80	2.37	35.01	1.16	0.53	0.03	0.83	0.05