Citation:

PANGAEA.923033

Name: Metadata and NCBI-Accession numbers of the global Deep-sea Sponge Microbiome Project
Published: 2022-07-27
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Deep-sea; meta-analysis; microbes; ocean; seawater; sediment; sponge

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Abstract:

The Deep-sea Sponge Microbiome Project is a large-scale study, integrating 16S amplicon sequencing data of seawater, sediment, and sponges, with a large set of ecological and physical metadata. The present dataset includes NCBI-accession numbers, sample collection details, and diverse measurements, adding up to 50 entries for each of the 1546 covered samples.

Keyword(s):

Deep-sea; meta-analysis; microbes; ocean; seawater; sediment; sponge

Supplement to:

Busch, Kathrin; Slaby, Beate M; Bach, Wolfgang; Boetius, Antje; Clefsen, Ina; Colaço, Ana; Creemers, Marie; Cristobo, Javier; Federwisch, Luisa; Franke, Andre; Gavriilidou, Asimenia; Hethke, Andrea; Kenchington, Ellen L; Mienis, Furu; Mills, Sadie; Riesgo, Ana; Rios, Pilar; Roberts, Emyr Martyn; Sipkema, Detmer; Pita, Lucía; Schupp, Peter; Xavier, Joana R; Rapp, Hans Tore; Hentschel, Ute (2022): Biodiversity, environmental drivers, and sustainability of the global deep-sea sponge microbiome. Nature Communications, 13(1), 5160, https://doi.org/10.1038/s41467-022-32684-4

Related to:

Busch, Kathrin; Hentschel, Ute (2022): CTD profiles of the global Deep-sea Sponge Microbiome Project. PANGAEA, https://doi.org/10.1594/PANGAEA.923035

Garcia, H E; Weathers, Katharine W; Paver, Christopher R; Smolyar, I; Boyer, Timothy P; Locarnini, Ricardo A; Zweng, M M; Mishonov, Alexey V; Baranova, O; Seidov, Dan; Reagan, James R (2019): World Ocean Atlas 2018, Volume 3: Dissolved Oxygen, Apparent Oxygen Utilization, and Oxygen Saturation. In: Mishonov, A.. (Technical Ed.), NOAA Atlas NESDIS 83, 38pp., https://www.ncei.noaa.gov/access/metadata/landing-page/bin/iso?id=gov.noaa.nodc:NCEI-WOA18

Garcia, H E; Weathers, Katharine W; Paver, Christopher R; Smolyar, I; Boyer, Timothy P; Locarnini, Ricardo A; Zweng, M M; Mishonov, Alexey V; Baranova, O; Seidov, Dan; Reagan, James R (2019): World Ocean Atlas 2018, Volume 4: Dissolved Inorganic Nutrients (phosphate, nitrate, silicate). In: Mishonov, A.. (Technical Ed.), NOAA Atlas NESDIS 84, 35pp., https://www.ncei.noaa.gov/access/metadata/landing-page/bin/iso?id=gov.noaa.nodc:NCEI-WOA18

Locarnini, Ricardo A; Mishonov, Alexey V; Baranova, O; Boyer, Timothy P; Zweng, M M; Garcia, H E; Reagan, James R; Seidov, Dan; Weathers, Katharine W; Paver, Christopher R; Smolyar, I (2019): World Ocean Atlas 2018, Volume 1: Temperature. In: Mishonov, A.. (Technical Ed.), NOAA Atlas NESDIS 81, 52pp., https://www.ncei.noaa.gov/products/ocean-climate-laboratory

NASA Ocean Biology Processing Group (2017): MODIS-Aqua Level 3 Mapped Chlorophyll Data Version R2018.0. NASA Ocean Biology DAAC, https://doi.org/10.5067/AQUA/MODIS/L3M/CHL/2018

NASA Ocean Biology Processing Group (2017): MODIS-Aqua Level 3 Mapped Particulate Inorganic Carbon Data Version R2018.0. NASA Ocean Biology DAAC, https://doi.org/10.5067/AQUA/MODIS/L3M/PIC/2018

NASA Ocean Biology Processing Group (2017): MODIS-Aqua Level 3 Mapped Particulate Organic Carbon Data Version R2018.0. NASA Ocean Biology DAAC, https://doi.org/10.5067/AQUA/MODIS/L3M/POC/2018

Olsen, Are; Lange, Nico; Key, Robert M; Tanhua, Toste; Álvarez, Marta; Becker, Susan; Bittig, Henry; Carter, Brendan R; Cotrim da Cunha, Letícia; Feely, Richard A; van Heuven, Steven; Hoppema, Mario; Ishii, Masao; Jeansson, Emil; Jones, Steve D; Jutterstrøm, Sara; Karlsen, Maren K; Kozyr, Alexander; Lauvset, Siv K; Lo Monaco, Claire; Murata, Akihiko; Pérez, Fiz F; Pfeil, Benjamin; Schirnick, Carsten; Steinfeldt, Reiner; Suzuki, Toru; Telszewski, Maciej; Tilbrook, Bronte; Velo, Anton; Wanninkhof, Rik (2019): GLODAPv2.2019 – an update of GLODAPv2. Earth System Science Data, 11(3), 1437-1461, https://doi.org/10.5194/essd-11-1437-2019

Olsen, Are; Lange, Nico; Key, Robert M; Tanhua, Toste; Bittig, Henry C; Kozyr, Alexander; Álvarez, Marta; Azetsu-Scott, Kumiko; Becker, Susan; Brown, Peter J; Carter, Brendan R; Cotrim da Cunha, Letícia; Feely, Richard A; van Heuven, Steven; Hoppema, Mario; Ishii, Masao; Jeansson, Emil; Jutterstrøm, Sara; Landa, Camilla S; Lauvset, Siv K; Michaelis, Patrick; Murata, Akihiko; Pérez, Fiz F; Pfeil, Benjamin; Schirnick, Carsten; Steinfeldt, Reiner; Suzuki, Toru; Tilbrook, Bronte; Velo, Anton; Wanninkhof, Rik; Woosley, Ryan J (2020): An updated version of the global interior ocean biogeochemical data product, GLODAPv2.2020. Earth System Science Data, 12(4), 3653-3678, https://doi.org/10.5194/essd-12-3653-2020

Zweng, M M; Reagan, James R; Seidov, Dan; Boyer, Timothy P; Locarnini, Ricardo A; Garcia, H E; Mishonov, Alexey V; Baranova, O; Weathers, Katharine W; Paver, Christopher R; Smolyar, I (2019): World Ocean Atlas 2018, Volume 2: Salinity. In: Mishonov, A.. (Technical Ed.), NOAA Atlas NESDIS 82, 50pp., https://www.ncei.noaa.gov/access/world-ocean-atlas-2018/

Project(s):

Deep-sea Sponge Grounds Ecosystems of the North Atlantic (SponGES)

Funding:

Horizon 2020 (H2020), grant/award no. 679849 : Deep-sea Sponge Grounds Ecosystems of the North Atlantic

Coverage:

Median Latitude: 42.626109 * Median Longitude: 158.916347 * South-bound Latitude: -74.992700 * West-bound Longitude: 4.181100 * North-bound Latitude: 86.866000 * East-bound Longitude: -4.092100

Date/Time Start: 2012-07-20T17:07:00 * Date/Time End: 2019-09-10T09:05:00

Minimum DEPTH, water: 6 m * Maximum DEPTH, water: 4833 m

Event(s):

CV13012_A * Latitude: 52.448600 * Longitude: -10.171000 * Date/Time: 2013-08-20T00:00:00 * Elevation: -45.0 m * Campaign: * Basis: Celtic Voyager * Method/Device: Anchor dredge (DRG_A)

GS2016109A-01-CTD-01 * Latitude: 73.648260 * Longitude: 7.878930 * Date/Time: 2016-06-20T07:59:00 * Elevation: -2463.0 m * Location: Schultz Bank * Campaign: (GS16A-202) * Basis: * Method/Device: (CTD-RO)

GS2016109A-06-ROV-01 * Latitude Start: 73.815650 * Longitude Start: 7.519170 * Latitude End: 73.982650 * Longitude End: 7.523700 * Date/Time Start: 2016-06-20T15:34:00 * Date/Time End: 2016-06-21T00:10:00 * Elevation Start: -717.0 m * Elevation End: -640.0 m * Location: Schultz Bank * Campaign: (GS16A-202) * Basis: * Method/Device: Remote operated vehicle (ROV) * Comment: 4 transects on summit (approx 900 m long and 100-120 m between lines)

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Event label	Event		Busch, Kathrin
2	Identification	ID		Busch, Kathrin		unique ID
3	Project	Project		Busch, Kathrin		ncbi BioProject
4	Accession number, genetics	Access no gen		Busch, Kathrin		16S bacteria
5	Accession number, genetics	Access no gen		Busch, Kathrin		18S & COI sponge
6	Campaign	Campaign		Busch, Kathrin
7	DATE/TIME	Date/Time		Busch, Kathrin		Geocode
8	LATITUDE	Latitude		Busch, Kathrin		Geocode
9	LONGITUDE	Longitude		Busch, Kathrin		Geocode
10	DEPTH, water	Depth water	m	Busch, Kathrin		Geocode
11	Gear	Gear		Busch, Kathrin		event_gear
12	Station label	Station		Busch, Kathrin		event_ids
13	Realm	Realm		Busch, Kathrin
14	Area/locality	Area		Busch, Kathrin		location ID/geo_loc_name
15	Geological feature	Geol feature		Busch, Kathrin		geologic_setting.parent
16	Geological feature	Geol feature		Busch, Kathrin		geologic_setting
17	Zone	Zone		Busch, Kathrin		env_biome.child
18	Ocean	Ocean		Busch, Kathrin		world_ocean
19	Ocean	Ocean		Busch, Kathrin		world_ocean.child
20	Water bodies	Water bodies		Busch, Kathrin		water mass
21	Profile	Profile		Busch, Kathrin	CTD
22	Temperature, water	Temp	°C	Busch, Kathrin		in situ
23	Salinity	Sal		Busch, Kathrin		PSU; in situ
24	Pressure, water	Press	dbar	Busch, Kathrin		in situ
25	Density, sigma, in situ	Sigma in situ	kg/m³	Busch, Kathrin
26	Conductivity	Cond	mS/cm	Busch, Kathrin		in situ
27	Nitrate	[NO3]-	µmol/l	Busch, Kathrin	extracted from the World Ocean Atlas 2018 (WOA18)
28	Phosphate	[PO4]3-	µmol/l	Busch, Kathrin	extracted from the World Ocean Atlas 2018 (WOA18)
29	Silicate	Si(OH)4	µmol/l	Busch, Kathrin	extracted from the World Ocean Atlas 2018 (WOA18)
30	Oxygen, dissolved	DO	ml/l	Busch, Kathrin	extracted from the World Ocean Atlas 2018 (WOA18)
31	Oxygen, apparent utilization	AOU	ml/l	Busch, Kathrin	extracted from the World Ocean Atlas 2018 (WOA18)
32	Oxygen saturation	O2 sat	%	Busch, Kathrin	extracted from the World Ocean Atlas 2018 (WOA18)
33	Nitrogen/Phosphorus ratio	N/P		Busch, Kathrin
34	Silicon/Phosphorus ratio	Si/P		Busch, Kathrin
35	Carbon dioxide, total	TCO2	µmol/kg	Busch, Kathrin	extracted from GLODAPv2.2020
36	Alkalinity, total	AT	µmol/kg	Busch, Kathrin	extracted from GLODAPv2.2020
37	Carbon, organic, dissolved	DOC	µmol/kg	Busch, Kathrin	extracted from GLODAPv2.2020
38	Nitrogen, total dissolved	TDN	µmol/kg	Busch, Kathrin	extracted from GLODAPv2.2020
39	pH	pH		Busch, Kathrin	extracted from GLODAPv2.2020
40	Sea surface chlorophyll a	SSChla	mg/m³	Busch, Kathrin	derived from MODIS remote sensing data	accessed on 06/23/2020
41	Carbon, inorganic, particulate	PIC	mol/m³	Busch, Kathrin	derived from MODIS remote sensing data	surface; accessed on 06/23/2020
42	Carbon, organic, particulate	POC	mg/m³	Busch, Kathrin	derived from MODIS remote sensing data	surface; accessed on 06/23/2020
43	Distance	Distance	m	Busch, Kathrin		to MLD
44	Sample type	Samp type		Busch, Kathrin
45	Sample type	Samp type		Busch, Kathrin		fine
46	Uniform resource locator/link to reference	URL ref		Busch, Kathrin		host, scientific_name, aphiaID
47	Phylum	Phylum		Busch, Kathrin		host
48	Class	Class		Busch, Kathrin		host
49	Order	Order		Busch, Kathrin		host
50	Family	Family		Busch, Kathrin		host
51	Genus	Genus		Busch, Kathrin		host
52	Species	Species		Busch, Kathrin		host

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

54242 data points

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