Citation:

PANGAEA.922738

Name: Seawater carbonate chemistry and fish communities properties off CO2 seeps in Japan
Published: 2020-09-15
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Benthos; CO2 vent; Coast and continental shelf; Community composition and diversity; Entire community; Field observation; North Pacific; Pelagos; Rocky-shore community; Temperate

Always quote citation above when using data! You can download the citation in several formats below.

RIS Citation BibTeX Citation Text Citation Facebook TwitterShow Map Google Earth

Abstract:

Ocean acidification will likely change the structure and function of coastal marine ecosystems over coming decades. Volcanic carbon dioxide seeps generate dissolved CO2 and pH gradients that provide realistic insights into the direction and magnitude of these changes. Here, we used fish and benthic community surveys to assess the spatio-temporal dynamics of fish community properties off CO2 seeps in Japan. Adding to previous evidence from ocean acidification ecosystem studies conducted elsewhere, our findings documented shifts from calcified to non-calcified habitats with reduced benthic complexity. In addition, we found that such habitat transition led to decreased diversity of associated fish and to selection of those fish species better adapted to simplified ecosystems dominated by algae. Our data suggest that near-future projected ocean acidification levels will oppose the ongoing range expansion of coral reef-associated fish due to global warming.

Keyword(s):

Benthos; CO2 vent; Coast and continental shelf; Community composition and diversity; Entire community; Field observation; North Pacific; Pelagos; Rocky-shore community; Temperate

Supplement to:

Cattano, Carlo; Agostini, Sylvain; Harvey, Ben P; Wada, Shigeki; Quattrocchi, Federico; Turco, Gabriele; Inaba, Kazuo; Hall-Spencer, Jason M; Milazzo, Marco (2020): Changes in fish communities due to benthic habitat shifts under ocean acidification conditions. Science of the Total Environment, 725, 138501, https://doi.org/10.1016/j.scitotenv.2020.138501

Further details:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2019): seacarb: seawater carbonate chemistry with R. R package version 3.2.12. https://CRAN.R-project.org/package=seacarb

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Coverage:

Latitude: 34.319170 * Longitude: 139.205000

Event(s):

Shikine * Latitude: 34.319170 * Longitude: 139.205000 * Method/Device: Experiment (EXP)

Comment:

In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-07-07.

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Type	Type		Cattano, Carlo		study
2	Type	Type		Cattano, Carlo
3	Season	Season		Cattano, Carlo
4	Location	Location		Cattano, Carlo
5	Site	Site		Cattano, Carlo
6	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Cattano, Carlo		min
7	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Cattano, Carlo		max
8	Transect	Transect		Cattano, Carlo		Benthic
9	Canopy height	Canopy h	cm	Cattano, Carlo
10	Canopy height, standard deviation	Canopy h std dev	±	Cattano, Carlo
11	Biotic Habitat Profile ratio	BHP		Cattano, Carlo
12	Biotic Habitat Profile ratio, standard deviation	BHP std dev	±	Cattano, Carlo
13	Coverage	Cov	%	Cattano, Carlo		Turf
14	Coverage, standard deviation	Cov std dev	±	Cattano, Carlo		Turf
15	Coverage	Cov	%	Cattano, Carlo		CCA
16	Coverage, standard deviation	Cov std dev	±	Cattano, Carlo		CCA
17	Coverage	Cov	%	Cattano, Carlo		NonCanopy
18	Coverage, standard deviation	Cov std dev	±	Cattano, Carlo		NonCanopy
19	Coverage	Cov	%	Cattano, Carlo		Canopy
20	Coverage, standard deviation	Cov std dev	±	Cattano, Carlo		Canopy
21	Coverage	Cov	%	Cattano, Carlo		Caulerpa
22	Coverage, standard deviation	Cov std dev	±	Cattano, Carlo		Caulerpa
23	Coverage	Cov	%	Cattano, Carlo		Table Corals
24	Coverage, standard deviation	Cov std dev	±	Cattano, Carlo		Table Corals
25	Coverage	Cov	%	Cattano, Carlo		Soft Corals
26	Coverage, standard deviation	Cov std dev	±	Cattano, Carlo		Soft Corals
27	Coverage	Cov	%	Cattano, Carlo		Encrusting Corals
28	Coverage, standard deviation	Cov std dev	±	Cattano, Carlo		Encrusting Corals
29	Coverage	Cov	%	Cattano, Carlo		Massive Corals
30	Coverage, standard deviation	Cov std dev	±	Cattano, Carlo		Massive Corals
31	Coverage	Cov	%	Cattano, Carlo		Anemone
32	Coverage, standard deviation	Cov std dev	±	Cattano, Carlo		Anemone
33	Coverage	Cov	%	Cattano, Carlo		Other
34	Coverage, standard deviation	Cov std dev	±	Cattano, Carlo		Other
35	Transect	Transect		Cattano, Carlo		Fish
36	Species richness	S		Cattano, Carlo
37	Species richness, standard deviation	S std dev	±	Cattano, Carlo
38	Fish	Fish	#	Cattano, Carlo
39	Fish, standard deviation	Fish std dev	±	Cattano, Carlo
40	Species richness	S		Cattano, Carlo		Tropical
41	Species richness, standard deviation	S std dev	±	Cattano, Carlo		Tropical
42	Species richness	S		Cattano, Carlo		Temperate
43	Species richness, standard deviation	S std dev	±	Cattano, Carlo		Temperate
44	Species richness	S		Cattano, Carlo		Sub-Tropical
45	Species richness, standard deviation	S std dev	±	Cattano, Carlo		Sub-Tropical
46	Fish	Fish	#	Cattano, Carlo		Carnivore
47	Fish, standard deviation	Fish std dev	±	Cattano, Carlo		Carnivore
48	Fish	Fish	#	Cattano, Carlo		Herbivore
49	Fish, standard deviation	Fish std dev	±	Cattano, Carlo		Herbivore
50	Fish	Fish	#	Cattano, Carlo		Omnivore
51	Fish, standard deviation	Fish std dev	±	Cattano, Carlo		Omnivore
52	Fish	Fish	#	Cattano, Carlo		Planktivore
53	Fish, standard deviation	Fish std dev	±	Cattano, Carlo		Planktivore
54	Fish	Fish	#	Cattano, Carlo		Coral Associated Fish
55	Fish, standard deviation	Fish std dev	±	Cattano, Carlo		Coral Associated Fish
56	Salinity	Sal		Cattano, Carlo
57	Salinity, standard deviation	Sal std dev	±	Cattano, Carlo
58	Temperature, water	Temp	°C	Cattano, Carlo
59	Temperature, water, standard deviation	Temp std dev	±	Cattano, Carlo
60	pH	pH		Cattano, Carlo	Potentiometric	NBS scale
61	pH, standard deviation	pH std dev	±	Cattano, Carlo	Potentiometric	NBS scale
62	Replicates	Repl	#	Cattano, Carlo
63	Alkalinity, total	AT	µmol/kg	Cattano, Carlo	Potentiometric titration
64	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Cattano, Carlo	Calculated using CO2SYS
65	Partial pressure of carbon dioxide, standard deviation	pCO2 std dev	±	Cattano, Carlo	Calculated using CO2SYS
66	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Cattano, Carlo
67	Partial pressure of carbon dioxide, standard deviation	pCO2 std dev	±	Cattano, Carlo
68	Replicates	Repl	#	Cattano, Carlo
69	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
70	pH	pH		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	total scale
71	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
72	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
73	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
74	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
75	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
76	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
77	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
78	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

892 data points

Data

Download dataset as tab-delimited text — use the following character encoding:

1 Type (study)	2 Type	3 Season	4 Location	5 Site	6 pCO2water_SST_wet [µatm] (min)	7 pCO2water_SST_wet [µatm] (max)	8 Transect (Benthic)	9 Canopy h [cm]	10 Canopy h std dev [±]	11 BHP	12 BHP std dev [±]	13 Cov [%] (Turf)	14 Cov std dev [±] (Turf)	15 Cov [%] (CCA)	16 Cov std dev [±] (CCA)	17 Cov [%] (NonCanopy)	18 Cov std dev [±] (NonCanopy)	19 Cov [%] (Canopy)	20 Cov std dev [±] (Canopy)	21 Cov [%] (Caulerpa)	22 Cov std dev [±] (Caulerpa)	23 Cov [%] (Table Corals)	24 Cov std dev [±] (Table Corals)	25 Cov [%] (Soft Corals)	26 Cov std dev [±] (Soft Corals)	27 Cov [%] (Encrusting Corals)	28 Cov std dev [±] (Encrusting Corals)	29 Cov [%] (Massive Corals)	30 Cov std dev [±] (Massive Corals)	31 Cov [%] (Anemone)	32 Cov std dev [±] (Anemone)	33 Cov [%] (Other)	34 Cov std dev [±] (Other)	35 Transect (Fish)	36 S	37 S std dev [±]	38 Fish [#]	39 Fish std dev [±]	40 S (Tropical)	41 S std dev [±] (Tropical)	42 S (Temperate)	43 S std dev [±] (Temperate)	44 S (Sub-Tropical)	45 S std dev [±] (Sub-Tropical)	46 Fish [#] (Carnivore)	47 Fish std dev [±] (Carnivore)	48 Fish [#] (Herbivore)	49 Fish std dev [±] (Herbivore)	50 Fish [#] (Omnivore)	51 Fish std dev [±] (Omnivore)	52 Fish [#] (Planktivore)	53 Fish std dev [±] (Planktivore)	54 Fish [#] (Coral Associated Fish)	55 Fish std dev [±] (Coral Associated Fish)	56 Sal	57 Sal std dev [±]	58 Temp [°C]	59 Temp std dev [±]	60 pH (NBS scale, Potentiometric)	61 pH std dev [±] (NBS scale, Potentiometric)	62 Repl [#]	63 AT [µmol/kg] (Potentiometric titration)	64 pCO2water_SST_wet [µatm] (Calculated using CO2SYS)	65 pCO2 std dev [±] (Calculated using CO2SYS)	66 pCO2water_SST_wet [µatm]	67 pCO2 std dev [±]	68 Repl [#]	69 CSC flag (Calculated using seacarb afte...)	70 pH (total scale, Calculated using...)	71 CO2 [µmol/kg] (Calculated using seacarb afte...)	72 fCO2water_SST_wet [µatm] (Calculated using seacarb afte...)	73 pCO2water_SST_wet [µatm] (Calculated using seacarb afte...)	74 [HCO3]- [µmol/kg] (Calculated using seacarb afte...)	75 [CO3]2- [µmol/kg] (Calculated using seacarb afte...)	76 DIC [µmol/kg] (Calculated using seacarb afte...)	77 Omega Arg (Calculated using seacarb afte...)	78 Omega Cal (Calculated using seacarb afte...)
Field	Benthos	June	Control	Ref1	350		19	11.280	1.630	1.008	0.003	2.457	5.487	1.646	1.597	40.089	7.773	43.071	9.842	0.000	0.000	2.778	2.665	0.413	1.311	6.363	2.664	0.000	0.000	1.687	1.668	0.304	0.846																						34.7	0.05	18.9	0.3	8.21	0.01	28	2253.1	348.2	10.6	347.9	13.9	994	26	8.09	11.69	349.07	350.28	1788.85	187.38	1987.91	2.91	4.49
Field	Benthos	June	Control	Ref2	300		11	11.790	1.660	1.006	0.003	2.360	8.174	2.276	2.930	41.485	19.308	48.709	18.808	0.000	0.000	1.174	1.383	0.110	0.204	2.125	2.742	0.000	0.000	0.332	0.381	0.001	0.004																						34.8	0.05	19.5	0.2	8.25	0.03	27	2250.8	311.5	29.3	311.8	29.1	913	26	8.13	10.27	312.25	313.32	1743.44	204.73	1958.44	3.18	4.90
Field	Benthos	June	Elevated	Low	400		12	5.520	1.680	1.003	0.001	37.000	15.030	3.672	1.666	24.963	12.142	18.943	7.506	7.858	6.439	0.000	0.000	0.000	0.000	0.486	0.644	0.000	0.000	0.079	0.143	0.076	0.099																						34.7	0.05	19.5	0.7	8.16	0.05	16	2270.5	404.9	54.8	402.1	53.4	555	26	8.04	13.34	405.25	406.64	1838.01	174.96	2026.31	2.72	4.19
Field	Benthos	June	Elevated	Mid	550		17	5.650	2.290	1.001	0.000	77.637	8.057	0.554	0.456	1.630	1.937	8.743	5.639	5.102	2.435	0.000	0.000	0.000	0.000	0.296	0.448	0.000	0.000	0.000	0.000	0.000	0.000																						34.6	0.07	19.4	0.5	8.09	0.05	17	2253.4	497.2	72.6	552.1	188.2	843	26	7.97	16.07	486.46	488.13	1878.94	151.34	2046.35	2.35	3.63
Field	Benthos	June	Elevated	High	950		14	8.370	0.760	1.002	0.002	59.824	13.061	0.308	0.133	4.275	2.471	29.071	15.138	5.719	1.298	0.000	0.000	0.000	0.000	0.080	0.203	0.000	0.000	0.000	0.000	0.000	0.000																						34.5	0.05	19.9	0.5	7.87	0.15	11	2249.9	971.7	434.0	952.8	450.8	417	26	7.75	28.27	867.67	870.63	2006.07	98.67	2133.02	1.54	2.37
Field	Benthos	September	Control	Ref1	400		8	5.812	2.105	1.005	0.003	1.623	3.196	10.226	8.381	57.683	7.941	18.751	10.137	0.000	0.000	0.000	0.000	0.000	0.000	2.823	4.780	0.177	0.335	1.933	1.575	1.332	1.579																						33.9	0.20	26.3	1.4	8.18	0.01	4	2249.9	395.4	11.9				26	8.04	10.97	396.75	398.00	1734.21	209.92	1955.10	3.38	5.11
Field	Benthos	September	Control	Ref2	420		7	4.089	0.597	1.002	0.001	0.018	0.046	8.254	4.756	57.288	11.815	29.015	11.088	0.000	0.000	0.000	0.000	0.000	0.000	0.581	0.864	0.096	0.139	0.305	0.468	0.365	0.625																						33.9	0.20	26.2	1.7	8.16	0.01	4	2249.5	420.8	13.6				26	8.02	11.62	419.51	420.84	1753.21	202.05	1966.89	3.25	4.92
Field	Benthos	September	Elevated	Low	461		7	4.220	1.861	1.000	0.001	21.018	20.549	19.630	8.063	48.156	16.879	10.405	4.290	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.260	0.481	0.306	0.236	0.035	0.065																						33.9	0.00	25.6	0.1	8.13	0.01	4	2268.3	459.3	12.7				26	7.99	12.90	458.80	460.26	1801.79	190.23	2004.92	3.05	4.63
Field	Benthos	September	Elevated	Mid	850		8	4.790	1.578	1.001	0.000	43.593	26.996	20.012	4.085	26.819	25.578	7.108	7.310	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.401	0.956	0.205	0.579	0.149	0.229																						33.9	0.20	25.1	1.0	7.91	0.12	6	2257.3	849.7	291.0				26	7.77	23.42	822.27	824.90	1956.84	122.56	2102.82	1.96	2.98
Field	Benthos	September	Elevated	High	1650		7	4.577	0.547	1.001	0.001	76.803	8.518	9.843	4.749	2.595	0.911	6.042	5.961	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.000	0.002	0.004	0.000	0.000	0.000	0.000																						33.9	0.10	26.0	0.1	7.65	0.09	4	2267.8	1646.4	397.3				26	7.51	44.91	1612.52	1617.62	2087.24	73.88	2206.02	1.19	1.80
Field	Fish	June	Control	Ref1+Ref2	300	350																												30	15.80	2.90	137.23	68.13	9.30	2.00	1.10	0.70	5.37	1.50	38.767	25.117	8.433	13.483	0.800	1.203	89.233	99.464	7.830	2.770
Field	Fish	June	Elevated	Low	400																													12	13.67	2.10	78.25	31.04	6.80	1.60	1.83	0.58	5.00	1.21	22.667	10.064	6.167	5.112	1.583	0.828	47.833	26.952	5.250	1.620	34.7	0.05	19.5	0.7	8.16	0.05	16	2270.5	404.9	54.8	402.1	53.4	555	26	8.04	13.34	405.25	406.64	1838.01	174.96	2026.31	2.72	4.19
Field	Fish	June	Elevated	Mid	550																													17	11.06	2.22	40.06	20.45	6.00	1.70	1.59	0.71	3.47	1.50	15.824	8.920	4.706	4.784	1.176	0.897	18.353	15.664	3.290	1.160	34.6	0.07	19.4	0.5	8.09	0.05	17	2253.4	497.2	72.6	552.1	188.2	843	26	7.97	16.07	486.46	488.13	1878.94	151.34	2046.35	2.35	3.63
Field	Fish	June	Elevated	High	950																													14	9.79	1.72	73.29	35.01	4.93	1.33	1.29	0.47	3.57	1.28	22.000	14.016	28.786	25.703	0.857	0.770	21.571	22.907	2.710	1.070	34.5	0.05	19.9	0.5	7.87	0.15	11	2249.9	971.7	434.0	952.8	450.8	417	26	7.75	28.27	867.67	870.63	2006.07	98.67	2133.02	1.54	2.37
Field	Fish	September	Control	Ref1+Ref2	400	420																												15	17.33	2.61	159.13	45.93	9.07	1.94	1.07	0.88	7.07	1.79	53.333	26.886	6.667	3.250	1.200	1.763	97.867	38.630	8.467	1.562
Field	Fish	September	Elevated	Low	460																													7	12.71	1.11	113.86	33.06	5.57	1.27	1.71	0.76	5.00	1.41	26.000	3.679	14.429	9.105	1.286	1.785	72.000	23.616	4.286	0.646	33.9	0.00	25.6	0.1	8.13	0.01	4	2268.3	459.3	12.7				26	7.99	12.90	458.80	460.26	1801.79	190.23	2004.92	3.05	4.63
Field	Fish	September	Elevated	Mid	850																													8	9.75	1.39	37.13	11.00	4.50	1.77	1.63	0.52	3.63	1.51	13.750	4.202	5.500	3.351	1.125	0.826	16.750	7.356	2.625	0.778	33.9	0.20	25.1	1.0	7.91	0.12	6	2257.3	849.7	291.0				26	7.77	23.42	822.27	824.90	1956.84	122.56	2102.82	1.96	2.98
Field	Fish	September	Elevated	High	1650																													7	10.43	2.37	42.00	9.83	5.86	1.57	1.14	0.69	3.43	0.79	10.000	3.282	8.286	4.863	10.286	5.571	13.429	6.311	2.857	0.469	33.9	0.10	26.0	0.1	7.65	0.09	4	2267.8	1646.4	397.3				26	7.51	44.91	1612.52	1617.62	2087.24	73.88	2206.02	1.19	1.80