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Data Publisher for Earth & Environmental Science

Gómez, C E; Wickes, Leslie; Deegan, Dan; Etnoyer, Peter J; Cordes, Erik E (2018): Seawater carbonate chemistry and growth and feeding of deep-sea coral Lophelia pertusa [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.919851

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Abstract:
The global decrease in seawater pH known as ocean acidification has important ecological consequences and is an imminent threat for numerous marine organisms. Even though the deep sea is generally considered to be a stable environment, it can be dynamic and vulnerable to anthropogenic disturbances including increasing temperature, deoxygenation, ocean acidification and pollution. Lophelia pertusa is among the better-studied cold-water corals but was only recently documented along the US West Coast, growing in acidified conditions. In the present study, coral fragments were collected at ∼300 m depth along the southern California margin and kept in recirculating tanks simulating conditions normally found in the natural environment for this species. At the collection site, waters exhibited persistently low pH and aragonite saturation states (Omega arag) with average values for pH of 7.66 +- 0.01 and Omega arag of 0.81 +- 0.07. In the laboratory, fragments were grown for three weeks in “favorable” pH/Omega arag of 7.9/1.47 (aragonite saturated) and “unfavorable” pH/ Omega arag of 7.6/0.84 (aragonite undersaturated) conditions. There was a highly significant treatment effect (P < 0.001) with an average% net calcification for favorable conditions of 0.023 +- 0.009%/d and net dissolution of −0.010 +- 0.014%/d for unfavorable conditions. We did not find any treatment effect on feeding rates, which suggests that corals did not depress feeding in low pH/ Omega arag in an attempt to conserve energy. However, these results suggest that the suboptimal conditions for L. pertusa from the California margin could potentially threaten the persistence of this cold-water coral with negative consequences for the future stability of this already fragile ecosystem.
Keyword(s):
Bottles or small containers/Aquaria (<20 L); Chlorophyta; Chromista; Haptophyta; Isochrysis galbana; Laboratory experiment; Laboratory strains; Not applicable; Other studied parameter or process; Pelagos; Phytoplankton; Plantae; Single species; Tetraselmis suecica
Supplement to:
Gómez, C E; Wickes, Leslie; Deegan, Dan; Etnoyer, Peter J; Cordes, Erik E (2018): Growth and feeding of deep-sea coral Lophelia pertusa from the California margin under simulated ocean acidification conditions. PeerJ, 6, e5671, https://doi.org/10.7717/peerj.5671
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2019): seacarb: seawater carbonate chemistry with R. R package version 3.2.12. https://CRAN.R-project.org/package=seacarb
Coverage:
Latitude: 33.918800 * Longitude: -119.471900
Date/Time Start: 2015-02-04T00:00:00 * Date/Time End: 2015-02-04T00:00:00
Event(s):
Southern_California_Bight * Latitude: 33.918800 * Longitude: -119.471900 * Date/Time: 2015-02-04T00:00:00 * Method/Device: Experiment (EXP)
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-06-12.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1TypeTypeGómez, C Estudy
2SpeciesSpeciesGómez, C E
3Registration number of speciesReg spec noGómez, C E
4Uniform resource locator/link to referenceURL refGómez, C EWoRMS Aphia ID
5Time point, descriptiveTime pointGómez, C E
6IdentificationIDGómez, C ETank
7TreatmentTreatGómez, C E
8Alkalinity, totalATµmol/kgGómez, C E
9FragmentsFragmGómez, C E
10Buoyant massM buoyantmgGómez, C EAverage
11DensityDensityg/cm3Gómez, C ESeawater
12Dry massDry mgGómez, C E
13IndividualsInd#Gómez, C EPolyps
14Individuals, standard deviationInd std dev±Gómez, C EPolyps
15IndividualsInd#Gómez, C EArtemia-initial
16IndividualsInd#Gómez, C EArtemia-final
17IndividualsInd#Gómez, C EDifference of artemia
18Feeding rate per individualFeed rate/ind#/#/hGómez, C E
19Feeding rate, standard deviationFeed rate std dev±Gómez, C E
20ReplicatesRepl#Gómez, C E
21MassMassgGómez, C EInitial skeletal
22Mass, standard deviationMass std dev±Gómez, C EInitial skeletal
23Calcification rateCalc rate%/dayGómez, C E
24Calcification rate, standard deviationCalc rate std dev±Gómez, C E
25SalinitySalGómez, C E
26Temperature, waterTemp°CGómez, C E
27Temperature, water, standard deviationTemp std dev±Gómez, C E
28Alkalinity, totalATµmol/kgGómez, C EPotentiometric titration
29Alkalinity, total, standard deviationAT std dev±Gómez, C EPotentiometric titration
30pHpHGómez, C EPotentiometrictotal scale
31pH, standard deviationpH std dev±Gómez, C EPotentiometrictotal scale
32Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmGómez, C ECalculated using CO2calc
33Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Gómez, C ECalculated using CO2calc
34Bicarbonate ion[HCO3]-µmol/kgGómez, C ECalculated using CO2calc
35Bicarbonate ion, standard deviation[HCO3]- std dev±Gómez, C ECalculated using CO2calc
36Carbonate ion[CO3]2-µmol/kgGómez, C ECalculated using CO2calc
37Carbonate ion, standard deviation[CO3]2- std dev±Gómez, C ECalculated using CO2calc
38Aragonite saturation stateOmega ArgGómez, C ECalculated using CO2calc
39Aragonite saturation state, standard deviationOmega Arg std dev±Gómez, C ECalculated using CO2calc
40Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
41Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
42Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
43Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
44Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
45Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
46Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
47Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
48Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
2697 data points

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