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Aepfler, Rebecca F; Bühring, Solveig I; Elvert, Marcus (2020): Polar lipid-derived fatty acids (PLFAs) of surface samples from the Wadden Sea [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.918316, In: Aepfler, RF et al. (2020): Substrate characteristic bacterial fatty acid production based on amino acid assimilation and transformation in marine surface sediments from the Wadden Sea, Germany [dataset publication series]. PANGAEA, https://doi.org/10.1594/PANGAEA.918317

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Keyword(s):
bacterial community functions; metabolic pathways; polar lipid-derived fatty acids; position-specific labeling; stable isotope probing; substrate specificity
Related to:
Aepfler, Rebecca F; Bühring, Solveig I; Elvert, Marcus (2019): Substrate characteristic bacterial fatty acid production based on amino acid assimilation and transformation in marine sediments. FEMS Microbiology Ecology, 95(10), https://doi.org/10.1093/femsec/fiz131
Coverage:
Latitude: 53.733333 * Longitude: 8.500000
Minimum DEPTH, sediment/rock: 0.02 m * Maximum DEPTH, sediment/rock: 0.02 m
Event(s):
Wadden_Sea_surface * Latitude: 53.733333 * Longitude: 8.500000 * Location: Wadden Sea, Germany
Comment:
* C15:1-I and C15:1-II are tentatively assigned as C15:1ω8 and C15:1ω6 (molecule structures were not identifiable entirely in terms of their double bound-positions).
** iC17:1-I and iC17:1-II can be assumed to embody the fatty acids iC17:1ω8 and iC17:1ω6 (molecule structures were not identifiable entirely in terms of their double bound-positions).
*** has not been separated from following peaks distinctly enough for accurate isotopic value determination.
Duplicate measurements of the incubated samples held deviations of the FA concentrations of ±4.7 ng PLFA g−1 (C13:0 with a concentration of 33.2 ng PLFA g−1) to ±877 ng PLFA g−1 (C16:0 with a concentration of 11 500 ng PLFA g−1). Deviations of the δ13C values were between <0.1 and ±69.4‰ (for PLFAs with label uptake of >700‰).
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
DEPTH, sediment/rockDepth sedmAepfler, Rebecca FGeocode
Depth, top/minDepth topmAepfler, Rebecca F
Depth, bottom/maxDepth botmAepfler, Rebecca F
ExperimentExpAepfler, Rebecca F
Time in hoursTimehAepfler, Rebecca F
CommentCommentAepfler, Rebecca F
iso-fatty acid C13:0i-C13:0ng/gAepfler, Rebecca F
n-fatty acid C13:0n-C13:0ng/gAepfler, Rebecca F
iso-fatty acid C14:0i-C14:0ng/gAepfler, Rebecca F
10 n-fatty acid C14:1w7n-C14:1w7ng/gAepfler, Rebecca F
11 n-fatty acid C14:0n-C14:0ng/gAepfler, Rebecca F
12 iso-fatty acid C15:0i-C15:0ng/gAepfler, Rebecca F
13 anteiso-fatty acid aiC15:0ai-C15:0ng/gAepfler, Rebecca F
14 n-fatty acid C15:1-In-C15:1-Ing/gAepfler, Rebecca F*
15 n-fatty acid C15:1-IIn-C15:1-IIng/gAepfler, Rebecca F*
16 n-fatty acid C15:0n-C15:0ng/gAepfler, Rebecca F
17 iso-fatty acid C16:0i-C16:0ng/gAepfler, Rebecca F
18 n-fatty acid C16:3n-C16:3ng/gAepfler, Rebecca F
19 n-fatty acid C16:1w7cis/transn-C16:1w7c/tng/gAepfler, Rebecca F
20 n-fatty acid C16:1w5n-C16:1w5ng/gAepfler, Rebecca F
21 n-fatty acid C16:0n-C16:0ng/gAepfler, Rebecca F
22 iso-fatty acid C17:1-Ii-C17:1-Ing/gAepfler, Rebecca F**
23 iso-fatty acid C17:1-IIi-C17:1-IIng/gAepfler, Rebecca F**
24 10Me-C16:010Me-C16:0ng/gAepfler, Rebecca F
25 iso-fatty acid C17:0i-C17:0ng/gAepfler, Rebecca F
26 anteiso-fatty acid aiC17:0ai-C17:0ng/gAepfler, Rebecca F***
27 n-fatty acid C17:1w8n-C17:1w8ng/gAepfler, Rebecca F
28 n-fatty acid C17:1w6n-C17:1w6ng/gAepfler, Rebecca F
29 n-fatty acid C17:0n-C17:0ng/gAepfler, Rebecca F
30 n-fatty acid C18:3n-C18:3ng/gAepfler, Rebecca F
31 n-fatty acid C18:4n-C18:4ng/gAepfler, Rebecca F
32 n-fatty acid C18:2n-C18:2ng/gAepfler, Rebecca F
33 n-fatty acid C18:1w9n-C18:1w9ng/gAepfler, Rebecca F
34 n-fatty acid C18:1w7cisn-C18:1w7cng/gAepfler, Rebecca F
35 n-fatty acid C18:1w7transn-C18:1w7tng/gAepfler, Rebecca F
36 n-fatty acid C18:0n-C18:0ng/gAepfler, Rebecca F
37 n-fatty acid C20:4n-C20:4ng/gAepfler, Rebecca F
38 n-fatty acid C20:5n-C20:5ng/gAepfler, Rebecca F
39 iso-fatty acid C13:0, δ13Ci-C13:0 δ13C‰ PDBAepfler, Rebecca F
40 n-fatty acid C13:0, δ13Cn-C13:0 δ13C‰ PDBAepfler, Rebecca F
41 iso-fatty acid C14:0, δ13Ci-C14:0 δ13C‰ PDBAepfler, Rebecca F
42 n-fatty acid C14:1w7, δ13Cn-C14:1w7 δ13C‰ PDBAepfler, Rebecca F
43 n-fatty acid C14:0, δ13Cn-C14:0 δ13C‰ PDBAepfler, Rebecca F
44 iso-fatty acid C15:0, δ13Ci-C15:0 δ13C‰ PDBAepfler, Rebecca F
45 anteiso-fatty acid C15:0, δ13Cai-C15:0 δ13C‰ PDBAepfler, Rebecca F
46 n-fatty acid C15:1-I, δ13Cn-C15:1-I δ13C‰ PDBAepfler, Rebecca F*
47 n-fatty acid C15:1-II, δ13Cn-C15:1-II δ13C‰ PDBAepfler, Rebecca F*
48 n-fatty acid C15:0, δ13Cn-C15:0 δ13C‰ PDBAepfler, Rebecca F
49 iso-fatty acid C16:0, δ13Ci-C16:0 δ13C‰ PDBAepfler, Rebecca F
50 n-fatty acid C16:3, δ13Cn-C16:3 δ13C‰ PDBAepfler, Rebecca F
51 n-fatty acid C16:1w7cis/trans, δ13Cn-C16:1w7c/t δ13C‰ PDBAepfler, Rebecca F
52 n-fatty acid C16:1w5, δ13Cn-C16:1w5 δ13C‰ PDBAepfler, Rebecca F
53 n-fatty acid C16:0, δ13Cn-C16:0 δ13C‰ PDBAepfler, Rebecca F
54 iso-fatty acid C17:1-I, δ13Ci-C17:1-I δ13C‰ PDBAepfler, Rebecca F**
55 iso-fatty acid C17:1-II, δ13Ci-C17:1-II δ13C‰ PDBAepfler, Rebecca F**
56 10Me-C16:0, δ13C10Me-C16:0 δ13C‰ PDBAepfler, Rebecca F
57 iso-fatty acid C17:0, δ13Ci-C17:0 δ13C‰ PDBAepfler, Rebecca F
58 anteiso-fatty acid C17:0, δ13Cai-C17:0 δ13C‰ PDBAepfler, Rebecca F***
59 n-fatty acid C17:1w8, δ13Cn-C17:1w8 δ13C‰ PDBAepfler, Rebecca F
60 n-fatty acid C17:1w6, δ13Cn-C17:1w6 δ13C‰ PDBAepfler, Rebecca F
61 n-fatty acid C17:0, δ13Cn-C17:0 δ13C‰ PDBAepfler, Rebecca F
62 n-fatty acid C18:3, δ13Cn-C18:3 δ13C‰ PDBAepfler, Rebecca F
63 n-fatty acid C18:4, δ13Cn-C18:4 δ13C‰ PDBAepfler, Rebecca F
64 n-fatty acid C18:2, δ13Cn-C18:2 δ13C‰ PDBAepfler, Rebecca F
65 n-fatty acid C18:1w9, δ13Cn-C18:1w9 δ13C‰ PDBAepfler, Rebecca F
66 n-fatty acid C18:1w7cis, δ13Cn-C18:1w7c δ13C‰ PDBAepfler, Rebecca F
67 n-fatty acid C18:1w7trans, δ13Cn-C18:1w7t δ13C‰ PDBAepfler, Rebecca F
68 n-fatty acid C18:0, δ13Cn-C18:0 δ13C‰ PDBAepfler, Rebecca F
69 n-fatty acid C20:4, δ13Cn-C20:4 δ13C‰ PDBAepfler, Rebecca F
70 n-fatty acid C20:5, δ13Cn-C20:5 δ13C‰ PDBAepfler, Rebecca F
Size:
1608 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Depth sed [m]

Depth top [m]

Depth bot [m]

Exp

Time [h]

Comment

i-C13:0 [ng/g]

n-C13:0 [ng/g]

i-C14:0 [ng/g]
10 
n-C14:1w7 [ng/g]
11 
n-C14:0 [ng/g]
12 
i-C15:0 [ng/g]
13 
ai-C15:0 [ng/g]
14 
n-C15:1-I [ng/g]
15 
n-C15:1-II [ng/g]
16 
n-C15:0 [ng/g]
17 
i-C16:0 [ng/g]
18 
n-C16:3 [ng/g]
19 
n-C16:1w7c/t [ng/g]
20 
n-C16:1w5 [ng/g]
21 
n-C16:0 [ng/g]
22 
i-C17:1-I [ng/g]
23 
i-C17:1-II [ng/g]
24 
10Me-C16:0 [ng/g]
25 
i-C17:0 [ng/g]
26 
ai-C17:0 [ng/g]
27 
n-C17:1w8 [ng/g]
28 
n-C17:1w6 [ng/g]
29 
n-C17:0 [ng/g]
30 
n-C18:3 [ng/g]
31 
n-C18:4 [ng/g]
32 
n-C18:2 [ng/g]
33 
n-C18:1w9 [ng/g]
34 
n-C18:1w7c [ng/g]
35 
n-C18:1w7t [ng/g]
36 
n-C18:0 [ng/g]
37 
n-C20:4 [ng/g]
38 
n-C20:5 [ng/g]
39 
i-C13:0 δ13C [‰ PDB]
40 
n-C13:0 δ13C [‰ PDB]
41 
i-C14:0 δ13C [‰ PDB]
42 
n-C14:1w7 δ13C [‰ PDB]
43 
n-C14:0 δ13C [‰ PDB]
44 
i-C15:0 δ13C [‰ PDB]
45 
ai-C15:0 δ13C [‰ PDB]
46 
n-C15:1-I δ13C [‰ PDB]
47 
n-C15:1-II δ13C [‰ PDB]
48 
n-C15:0 δ13C [‰ PDB]
49 
i-C16:0 δ13C [‰ PDB]
50 
n-C16:3 δ13C [‰ PDB]
51 
n-C16:1w7c/t δ13C [‰ PDB]
52 
n-C16:1w5 δ13C [‰ PDB]
53 
n-C16:0 δ13C [‰ PDB]
54 
i-C17:1-I δ13C [‰ PDB]
55 
i-C17:1-II δ13C [‰ PDB]
56 
10Me-C16:0 δ13C [‰ PDB]
57 
i-C17:0 δ13C [‰ PDB]
58 
ai-C17:0 δ13C [‰ PDB]
59 
n-C17:1w8 δ13C [‰ PDB]
60 
n-C17:1w6 δ13C [‰ PDB]
61 
n-C17:0 δ13C [‰ PDB]
62 
n-C18:3 δ13C [‰ PDB]
63 
n-C18:4 δ13C [‰ PDB]
64 
n-C18:2 δ13C [‰ PDB]
65 
n-C18:1w9 δ13C [‰ PDB]
66 
n-C18:1w7c δ13C [‰ PDB]
67 
n-C18:1w7t δ13C [‰ PDB]
68 
n-C18:0 δ13C [‰ PDB]
69 
n-C20:4 δ13C [‰ PDB]
70 
n-C20:5 δ13C [‰ PDB]
0.020.010.03Alanine-3-13C-ExperimentBackground102.0119.063.391538543281.727010203708370656534050.647.523574.028.866714926824865660656.863111601090-22.9-22.3-15.0-18.1-19.9-18.6-21.9-17.6-18.5-18.8-15.1-37.6-19.1-9.7-18.1-27.5-24.9-19.8-18.7-26.6-20.5-22.9-19.5-22.3-35.3-21.4-16.6-18.8
0.020.010.03Alanine-3-13C-Experiment057.0113.039.4104049653092.2244134031510100201737025.949.812374.062.5821270444261875132056.680326002970-16.7-19.1-14.5-18.8-19.2-18.8-21.8-18.4-18.3-10.6-14.8-34.6-18.9-4.8-17.1-27.7-18.1-3.9-19.4-28.5-19.0-17.2-19.3-20.4-35.7-22.4-18.3-22.4
0.020.010.03Alanine-3-13C-Experiment394.8120.056.795345049185.824610703988820591539022.851.111741.434.464319231119971277157.863515601560-12.6-3.44.4-11.739.68.8-10.76.7-12.2-4.3-14.0-27.1-13.5-2.932.6-12.516.713.7-10.36.0-9.4-15.7-17.7-10.1-11.6-15.0-20.4-19.9
0.020.010.03Alanine-3-13C-Experiment654.4103.036.790546147875.321711802508620197588029.787.611466.356.765920137421580792253.96792140210045.527.327.74.6153.065.914.468.815.922.1-4.66.00.819.882.6-10.8116.038.54.481.7-7.1-17.0-6.526.519.6-6.6-17.7-19.9
0.020.010.03Alanine-3-13C-Experiment1242.693.037.078745547766.420011602237120160578074.434.212160.147.975321839322170386943.779412301850104.080.0110.058.2305.0145.070.0166.067.074.631.060.340.977.7356.0-14.5312.0162.039.4251.0131.0-16.415.9172.0108.021.5-17.2-21.5
0.020.010.03Alanine-3-13C-Experiment2460.7129.052.7101060962683.123113002919340226672040.155.512480.859.6764239450182888116056.670021201920128.0110.0228.0116.0374.0178.0137.0228.0105.0109.087.5143.188.483.8542.0-11.4321.0194.076.3409.0196.0-17.429.2382.0264.060.9-18.3-19.6
0.020.010.03Alanine-3-13C-Experiment3646.482.668.972048246552.616895231472704665460145.050.210866.743.474318735219777698359.265216601410115.0115.0241.0122.0394.0196.0152.0238.0110.0122.098.1184.694.196.3653.0-12.9426.0217.080.4441.0200.0-14.536.5427.0390.047.7-17.0-19.6
0.020.010.03Valine-2-13C-ExperimentBackground38.357.8106.050.01380615669114.032318302901280145002641020018.463.411983.357.610203255731100132063.982326002500-23.2-23.1-21.0-13.9-17.5-20.3-17.1-21.9-17.5-18.8-19.1-24.1-18.0-35.6-20.0-9.9-18.3-25.3-25.4-15.8-19.7-27.3-17.6-18.5-21.5-35.1-23.8-18.3-19.8
0.020.010.03Valine-2-13C-Experiment036.750.9103.043.11240542610103.02811580271130012900240851017.465.310073.956.1923305500990123056.080222001840-23.1-22.5-17.7-14.6-17.9-19.0-16.6-22.4-15.7-19.1-6.6-23.3-18.6-37.4-19.1-4.5-3.4-23.1-20.4-9.6-19.6-25.6-16.7-18.9-21.7-34.3-25.2-18.2-19.8
0.020.010.03Valine-2-13C-Experiment346.469.8133.062.41430643794127.030918402791070143005931040014.172.811190.864.410803215751240136071.4111017301600-4.6-19.081.3-13.3-11.48.8-10.7-17.5-14.2-17.656.2-22.0-17.8-34.1-15.916.50.4-21.54.3-0.3-19.2-18.8-14.5-16.4-18.0-34.5-21.6-17.5-19.3
0.020.010.03Valine-2-13C-Experiment658.881.3145.065.81530709805138.03361950280977152006021110016.581.211999.362.011003516031240140077.41260140011005.2-15.3164.0-5.9-4.433.7-5.1-14.0-7.8-17.1122.0-21.9-17.0-32.3-13.135.017.3-20.36.05.1-18.3-16.0-11.2-13.6-14.5-35.9-18.2-16.9-18.5
0.020.010.03Valine-2-13C-Experiment1249.065.8147.077.71310719795129.03371770311118013700606973019.977.9128103.070.410403396411200141073.39511380114037.0-13.0360.05.69.490.67.5-6.3-5.8-15.7240.0-20.3-15.7-24.5-5.742.258.3-19.952.210.9-18.3-11.6-6.2-10.3-3.4-5.4-11.5-17.8-19.0
0.020.010.03Valine-2-13C-Experiment2474.787.3177.0105.01750878919145.035421403631300171006681150015.687.8128107.065.512503815791360150080.210102170190066.6-10.8684.022.132.6190.027.88.36.9-12.5428.0-18.1-4.90.510.295.1187.0-12.173.125.8-14.0-0.2-2.0-1.655.87.9-2.1-17.0-18.8
0.020.010.03Valine-2-13C-Experiment3648.357.3152.095.41840737866124.02842160602948133006141340019.8111.0109121.080.99992867161420134087.135801690139093.8-11.9643.035.329.3229.036.015.011.8-10.7345.0-11.114.831.013.6268.0235.0-11.391.324.7-12.27.85.10.9160.069.5-17.4-16.0-19.1
0.020.010.03Leucine-3-13C-ExperimentBackground44.270.6127.033.91720595688169.02220332209002671300021.577.113287.960.841173695.43011530134064.923102970-23.5-23.1-19.5-16.7-17.8-19.7-19.7-23.7-19.1-18.4-14.8-38.0-17.8-9.9-14.8-25.1-25.1-17.8-24.4-18.5-12.0-15.5-19.2-20.2-32.4-16.1-18.3
0.020.010.03Leucine-3-13C-Experiment043.963.431.11480598702178.01800313147002641040022.867.813981.189.2437662101.03341090100061.415401450-21.5-22.7-15.8-19.0-17.0-16.9-25.7-19.2-6.6-14.7-35.8-18.1-8.9-14.3-24.5-21.0-1.4-20.9-20.1-12.9-16.3-17.9-22.3-33.5-17.1-18.4
0.020.010.03Leucine-3-13C-Experiment346.163.7122.036.81320546619149.0172032910700244978042.854.911974.469.240364986.025185780763.198383261.5-18.1-19.3-16.7-17.9108.0-5.8-21.8-19.8-3.7-14.2-34.6-17.8-6.64.2-23.383.0-1.9-21.2-18.3-12.7-17.3-17.5-15.6-30.4-16.9-18.4
0.020.010.03Leucine-3-13C-Experiment679.3107.0120.090.7308010301180324.03840493347004182100039.383.8222130.0160.07021200201.042224102420105.340804640135.0-17.1-19.0-17.5-17.5215.01.6-22.0-18.9-4.3-13.9-33.0-17.6-6.724.8-15.0137.01.4-21.6-18.1-10.8-16.2-17.9-11.0-25.6-17.2-18.7
0.020.010.03Leucine-3-13C-Experiment1261.783.2214.026.81840676706189.02230307216002731210015.754.915479.686.448368390.62801410123063.321502400309.0-16.0-18.6-15.1-16.2447.029.6-11.4-16.1-0.1-12.1-26.1-15.712.2271.08.9313.02.6-16.6-14.9-10.1-16.4-16.42.0-22.2-17.1-18.0
0.020.010.03Leucine-3-13C-Experiment2453.778.5143.051.11690680669164.02080312192002571160015.063.513783.074.441668883.12421310116062.520202150606.0-13.1-13.80.3-14.3816.072.09.6-14.311.7-5.3-24.9-8.254.8741.038.5622.09.0-14.9-10.9-10.4-11.8-12.663.2-20.7-17.0-18.1
0.020.010.03Leucine-3-13C-Experiment3656.552.8135.035.51610678640149.01840372177002871020014.665.114478.763.139660673.82291290118072.920002130766.0-11.6-4.930.9-6.21110.096.724.6-11.818.615.9-2.27.656.0987.027.51070.020.1-1.2-4.80.9-6.1-9.3185.081.5-16.2-18.6
0.020.010.03Leucine-1-13C-ExperimentBackground53.566.8156.068.81560701794133.0348329164001080024.677.714280.669.0356634151073.626202170-23.4-22.2-20.0-15.8-20.4-20.3-18.3-20.8-15.5-18.8-18.1-20.0-9.7-15.7-24.2-25.7-17.8-26.0-21.7-23.6-36.4-16.9-18.4
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