Citation:

PANGAEA.915978

Name: Seawater carbonate chemistry and mussel respiration and calcification rates
Published: 2020-05-07
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Animalia; Benthic animals; Benthos; Brackish waters; Calcification/Dissolution; Laboratory experiment; Mesocosm or benthocosm; Mollusca; Mytilus californianus; North Pacific; Respiration; Single species; Temperate

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Abstract:

Marine habitat‐forming species often play critical roles on rocky shores by ameliorating stressful conditions for associated organisms. Such ecosystem engineers provide structure and shelter, for example, by creating refuges from thermal and desiccation stresses at low tide. Less explored is the potential for habitat formers to alter interstitial seawater chemistry during their submergence. Here, we quantify the capacity for dense assemblages of the California mussel, Mytilus californianus, to change seawater chemistry (dissolved O2, pH, and total alkalinity) within the interiors of mussel beds at high tide via respiration and calcification. We established a living mussel bed within a laboratory flow tank and measured vertical pH and oxygen gradients within and above the mussel bed over a range of water velocities. We documented decreases of up to 0.1 pH and 25 μmol O2/kg internal to the bed, along with declines of 100 μmol/kg in alkalinity, when external flows were 95% of the time. Reductions in pH and O2 inside mussel beds may negatively impact resident organisms and exacerbate parallel human‐induced perturbations to ocean chemistry while potentially selecting for improved tolerance to altered chemistry conditions.

Keyword(s):

Animalia; Benthic animals; Benthos; Brackish waters; Calcification/Dissolution; Laboratory experiment; Mesocosm or benthocosm; Mollusca; Mytilus californianus; North Pacific; Respiration; Single species; Temperate

Supplement to:

Ninokawa, Aaron; Takeshita, Yuichiro; Jellison, Brittany M; Jurgens, Laura J; Gaylord, B (2020): Biological modification of seawater chemistry by an ecosystem engineer, the California mussel, Mytilus californianus. Limnology and Oceanography, 65(1), 157-172, https://doi.org/10.1002/lno.11258

Further details:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2019): seacarb: seawater carbonate chemistry with R. R package version 3.2.12. https://CRAN.R-project.org/package=seacarb

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Coverage:

Latitude: 38.318337 * Longitude: -123.071903

Date/Time Start: 2017-02-02T00:00:00 * Date/Time End: 2017-02-13T00:00:00

Event(s):

Bodega_Bay * Latitude: 38.318337 * Longitude: -123.071903 * Date/Time Start: 2017-01-01T00:00:00 * Date/Time End: 2017-01-31T00:00:00 * Method/Device: Experiment (EXP)

Comment:

In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-05-6.

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Type	Type		Ninokawa, Aaron		study
2	Species	Species		Ninokawa, Aaron
3	Registration number of species	Reg spec no		Ninokawa, Aaron
4	Uniform resource locator/link to reference	URL ref		Ninokawa, Aaron		WoRMS Aphia ID
5	Profile	Profile		Ninokawa, Aaron
6	DATE/TIME	Date/Time		Ninokawa, Aaron		Geocode
7	Flow velocity, water	Vel water	m/s	Ninokawa, Aaron		Above-bed data
8	Location	Location		Ninokawa, Aaron		Bed, above-bed Data
9	Temperature, water	Temp	°C	Ninokawa, Aaron		Above-bed data
10	Salinity	Sal		Ninokawa, Aaron		Above-bed data
11	pH	pH		Ninokawa, Aaron		Total scale, above-bed data
12	Oxygen	O2	µmol/kg	Ninokawa, Aaron		Above-bed data
13	Alkalinity, total	AT	µmol/kg	Ninokawa, Aaron		Above-bed data
14	Bicarbonate ion	[HCO3]-	µmol/kg	Ninokawa, Aaron		Above-bed data
15	Calcite saturation state	Omega Cal		Ninokawa, Aaron		Above-bed data
16	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Ninokawa, Aaron		Above-bed data
17	Calcification rate of calcium carbonate	Calc rate CaCO3	mmol/m²/h	Ninokawa, Aaron		Within-bed seawater chemistry
18	Respiration rate, oxygen	Resp O2	mmol/m²/h	Ninokawa, Aaron
19	pH	pH		Ninokawa, Aaron		total scale, within-bed seawater chemistry
20	Oxygen	O2	µmol/kg	Ninokawa, Aaron		Within-bed seawater chemistry
21	Alkalinity, total	AT	µmol/kg	Ninokawa, Aaron		Within-bed seawater chemistry
22	Bicarbonate ion	[HCO3]-	µmol/kg	Ninokawa, Aaron		Within-bed seawater chemistry
23	Calcite saturation state	Omega Cal		Ninokawa, Aaron		Within-bed seawater chemistry
24	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Ninokawa, Aaron		Within-bed seawater chemistry
25	Maximal differences in pH	ΔpH		Ninokawa, Aaron
26	Difference	Diff		Ninokawa, Aaron		Maximum observed differences of oxygen
27	Difference	Diff		Ninokawa, Aaron		Maximum observed differences of alkalinity
28	Difference	Diff		Ninokawa, Aaron		Maximum observed differences of [HCO3]-
29	Difference	Diff		Ninokawa, Aaron		Maximum observed differences of calcite saturation state
30	Difference	Diff		Ninokawa, Aaron		Maximum observed differences of pCO2
31	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
32	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	Above-bed
33	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	Above-bed
34	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	Above-bed
35	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	Above-bed
36	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	Above-bed
37	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	Above-bed
38	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	Above-bed
39	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	Above-bed
40	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	Within-bed
41	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	Within-bed
42	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	Within-bed
43	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	Within-bed
44	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	Within-bed
45	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	Within-bed
46	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	Within-bed
47	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	Within-bed

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

774 data points

Data

Download dataset as tab-delimited text — use the following character encoding:

1 Type (study)	2 Species	3 Reg spec no	4 URL ref (WoRMS Aphia ID)	5 Profile	6 Date/Time	7 Vel water [m/s] (Above-bed data)	8 Location (Bed, above-bed Data)	9 Temp [°C] (Above-bed data)	10 Sal (Above-bed data)	11 pH (Total scale, above-bed data)	12 O2 [µmol/kg] (Above-bed data)	13 AT [µmol/kg] (Above-bed data)	14 [HCO3]- [µmol/kg] (Above-bed data)	15 Omega Cal (Above-bed data)	16 pCO2water_SST_wet [µatm] (Above-bed data)	17 Calc rate CaCO3 [mmol/m²/h] (Within-bed seawater chemistry)	18 Resp O2 [mmol/m²/h]	19 pH (total scale, within-bed seawa...)	20 O2 [µmol/kg] (Within-bed seawater chemistry)	21 AT [µmol/kg] (Within-bed seawater chemistry)	22 [HCO3]- [µmol/kg] (Within-bed seawater chemistry)	23 Omega Cal (Within-bed seawater chemistry)	24 pCO2water_SST_wet [µatm] (Within-bed seawater chemistry)	25 ΔpH	26 Diff (Maximum observed differences ...)	27 Diff (Maximum observed differences ...)	28 Diff (Maximum observed differences ...)	29 Diff (Maximum observed differences ...)	30 Diff (Maximum observed differences ...)	31 CSC flag	32 CO2 [µmol/kg] (Above-bed)	33 fCO2water_SST_wet [µatm] (Above-bed)	34 pCO2water_SST_wet [µatm] (Above-bed)	35 [HCO3]- [µmol/kg] (Above-bed)	36 [CO3]2- [µmol/kg] (Above-bed)	37 DIC [µmol/kg] (Above-bed)	38 Omega Arg (Above-bed)	39 Omega Cal (Above-bed)	40 CO2 [µmol/kg] (Within-bed)	41 fCO2water_SST_wet [µatm] (Within-bed)	42 pCO2water_SST_wet [µatm] (Within-bed)	43 [HCO3]- [µmol/kg] (Within-bed)	44 [CO3]2- [µmol/kg] (Within-bed)	45 DIC [µmol/kg] (Within-bed)	46 Omega Arg (Within-bed)	47 Omega Cal (Within-bed)
laboratory	Mytilus californianus (mollusk)	367837	marinespecies.org	7	2017-02-02	0.15	2	11.41	29.63	7.781	244.0	2070.0	1907.1	1.61	732.8	105.6	75.9	7.742	237.97	2040.8	1892.7	1.48	796.8	-0.040	-6.06	-29.2	-14.3	-0.13	64.0	8	31.56	730.45	733.22	1907.14	65.36	2004.06	1.01	1.61	34.27	793.00	796.01	1892.62	59.29	1986.18	0.92	1.46
laboratory	Mytilus californianus (mollusk)	367837	marinespecies.org	8	2017-02-02	0.15	1	11.47	29.63	7.763	249.2	2070.1	1913.1	1.55	767.4	62.3	42.2	7.742	240.65	2044.8	1896.0	1.48	797.3	-0.020	-8.52	-25.3	-17.1	-0.07	29.9	8	32.95	764.04	766.94	1913.01	63.04	2009.01	0.98	1.55	34.28	794.79	797.81	1896.08	59.54	1989.89	0.92	1.46
laboratory	Mytilus californianus (mollusk)	367837	marinespecies.org	9	2017-02-03	0.04	2	13.38	29.88	7.729	221.2	2088.9	1930.6	1.57	847.5	87.8	41.9	7.639	194.67	1999.5	1873.5	1.29	1012.7	-0.090	-26.57	-89.5	-57.0	-0.28	165.2	8	34.22	844.41	847.54	1930.55	63.77	2028.54	0.99	1.57	40.86	1008.14	1011.87	1873.48	50.30	1964.63	0.78	1.24
laboratory	Mytilus californianus (mollusk)	367837	marinespecies.org	10	2017-02-03	0.04	1	13.13	29.89	7.699	231.8	2088.5	1941.3	1.46	912.4	109.8	59.1	7.586	214.01	2009.0	1897.0	1.14	1154.5	-0.112	-17.78	-79.5	-44.3	-0.31	242.1	8	37.09	908.13	911.50	1941.22	59.28	2037.59	0.92	1.46	47.02	1151.26	1155.54	1897.16	44.66	1988.84	0.69	1.10
laboratory	Mytilus californianus (mollusk)	367837	marinespecies.org	11	2017-02-07	0.18	1	15.21	28.43	7.754	238.9	2025.1	1858.8	1.67	787.2	84.7	44.7	7.743	236.77	2015.8	1853.8	1.63	804.5	-0.011	-2.11	-9.2	-5.0	-0.04	17.3	8	30.27	783.82	786.66	1858.73	67.21	1956.21	1.06	1.67	30.96	801.82	804.72	1853.86	65.36	1950.19	1.03	1.62
laboratory	Mytilus californianus (mollusk)	367837	marinespecies.org	12	2017-02-07	0.18	2	14.68	28.43	7.724	247.5	2022.6	1869.3	1.54	843.8	49.7	19.4	7.711	244.75	2011.9	1863.5	1.49	867.2	-0.013	-2.72	-10.7	-5.8	-0.04	23.4	8	33.03	841.55	844.62	1869.42	61.82	1964.27	0.97	1.54	33.92	864.40	867.55	1863.55	59.81	1957.28	0.94	1.49
laboratory	Mytilus californianus (mollusk)	367837	marinespecies.org	13	2017-02-07	0.00	2	14.75	28.43	7.597	202.4	2020.4	1903.5	1.17	1152.2			7.516	178.40	1942.0	1847.3	0.98	1347.6	-0.081	-23.97	-78.3	-56.3	-0.19	195.4	8	44.98	1148.61	1152.79	1903.63	47.11	1995.72	0.74	1.17	52.60	1343.10	1347.99	1847.23	37.94	1937.76	0.59	0.94
laboratory	Mytilus californianus (mollusk)	367837	marinespecies.org	14	2017-02-07	0.00	1	14.45	28.43	7.579	202.4	2018.1	1907.0	1.11	1200.2			7.486	172.87	1922.6	1835.5	0.91	1432.0	-0.093	-29.49	-95.5	-71.5	-0.21	231.7	8	47.30	1196.83	1201.20	1907.08	44.76	1999.14	0.70	1.11	56.40	1426.98	1432.20	1835.51	34.78	1926.68	0.54	0.86
laboratory	Mytilus californianus (mollusk)	367837	marinespecies.org	15	2017-02-09	0.04	1	16.56	27.16	7.625	237.4	1979.4	1854.4	1.27	1075.4	29.8	9.0	7.582	232.40	1953.7	1841.0	1.16	1178.7	-0.043	-4.98	-25.7	-13.4	-0.11	103.3	8	39.99	1070.92	1074.73	1854.28	50.72	1944.98	0.80	1.27	43.83	1173.85	1178.03	1840.91	45.60	1930.34	0.72	1.14
laboratory	Mytilus californianus (mollusk)	367837	marinespecies.org	16	2017-02-09	0.04	2	16.05	27.16	7.607	243.6	1983.2	1864.8	1.20	1123.0	58.4	30.8	7.509	230.69	1922.0	1828.8	0.97	1380.4	-0.098	-12.91	-61.2	-36.0	-0.23	257.4	8	42.41	1118.56	1122.56	1864.77	47.99	1955.16	0.76	1.20	52.12	1374.64	1379.56	1828.75	37.56	1918.42	0.59	0.94
laboratory	Mytilus californianus (mollusk)	367837	marinespecies.org	17	2017-02-11	0.00	1	12.51	30.19	7.760	217.9	1956.1	1799.2	1.53	729.7			7.718	204.42	1913.3	1772.4	1.39	792.3	-0.042	-13.48	-42.8	-26.8	-0.13	62.5	8	30.23	727.01	729.73	1799.15	62.20	1891.58	0.96	1.53	32.80	788.87	791.82	1772.27	55.62	1860.70	0.86	1.36
laboratory	Mytilus californianus (mollusk)	367837	marinespecies.org	18	2017-02-11	0.00	2	12.59	30.19	7.708	238.0	1959.6	1818.6	1.37	832.7			7.654	220.15	1903.4	1780.7	1.22	922.9	-0.054	-17.80	-56.2	-37.9	-0.15	90.3	8	34.37	828.77	831.87	1818.48	55.95	1908.81	0.87	1.37	38.11	918.96	922.39	1780.61	48.38	1867.11	0.75	1.19
laboratory	Mytilus californianus (mollusk)	367837	marinespecies.org	19	2017-02-13	0.09	1	15.34	30.22	7.591	233.2	2040.5	1915.7	1.23	1169.4	115.6	17.9	7.510	228.91	2002.0	1899.1	1.03	1398.2	-0.081	-4.32	-38.5	-16.7	-0.20	228.8	8	44.38	1165.39	1169.60	1915.68	50.10	2010.16	0.78	1.23	53.01	1392.06	1397.09	1898.93	41.21	1993.15	0.64	1.01
laboratory	Mytilus californianus (mollusk)	367837	marinespecies.org	20	2017-02-13	0.18	1	14.87	30.22	7.577	229.5	2040.5	1921.5	1.17	1208.7	185.5	13.9	7.512	227.56	2012.8	1910.4	1.02	1393.0	-0.064	-1.97	-27.7	-11.1	-0.15	184.3	8	46.48	1203.18	1207.55	1921.37	47.78	2015.63	0.75	1.17	53.67	1389.55	1394.60	1910.53	40.91	2005.11	0.64	1.01
laboratory	Mytilus californianus (mollusk)	367837	marinespecies.org	21	2017-02-13	0.18	2	15.24	30.22	7.535	229.8	2040.5	1930.3	1.09	1338.8	101.6	19.5	7.487	227.21	2017.1	1918.9	0.98	1489.2	-0.049	-2.61	-23.5	-11.4	-0.11	150.4	8	50.99	1335.00	1339.83	1930.35	44.21	2025.55	0.69	1.09	56.61	1482.12	1487.49	1918.84	39.34	2014.79	0.61	0.97
laboratory	Mytilus californianus (mollusk)	367837	marinespecies.org	22	2017-02-13	0.24	1	15.02	30.22	7.561	229.5	2040.5	1924.8	1.14	1255.6	186.6	17.9	7.509	228.80	2019.6	1917.3	1.02	1411.0	-0.052	-0.73	-20.9	-7.6	-0.12	155.4	8	48.14	1251.90	1256.44	1924.83	46.41	2019.37	0.72	1.14	54.04	1405.53	1410.63	1917.18	41.01	2012.23	0.64	1.01
laboratory	Mytilus californianus (mollusk)	367837	marinespecies.org	23	2017-02-13	0.24	2	15.12	30.22	7.545	229.8	2040.5	1928.3	1.11	1305.7	121.8	0.5	7.506	229.51	2024.9	1922.6	1.02	1426.0	-0.040	-0.33	-15.7	-5.7	-0.09	120.3	8	49.92	1302.20	1306.92	1928.39	44.98	2023.30	0.70	1.11	54.44	1420.25	1425.40	1922.58	41.00	2018.02	0.64	1.01