Citation:

PANGAEA.915051

Name: Planktonic archaeal phosphorus affinity and apportionment (PAPAA)
Published: 2020-04-21
License: https://creativecommons.org/licenses/by/4.0/
Keywords: AOA; C fixation; nitrification; P assimilation; P limitation

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Published: 2020-04-21 • DOI registered: 2020-09-29

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Abstract:

Complete cell count, nutrient concentration, and radiotracer data for culture incubations and results presented in the manuscript "Carbon recycling efficiency and phosphate turnover by marine nitrifying archaea". This includes measurement of the following parameters for up to nine time points in cultures of N. maritimus strains NAOA6 and SCM1:

For each culture incubation, the time points where C and P uptake rates were considered to be first-order are identified by a value of 1 in the column "Linear Y/N".

Columns headed by "SD" provide the standard deviation of the value listed in the column to the immediate left.

Keyword(s):

AOA; C fixation; nitrification; P assimilation; P limitation

Supplement to:

Meador, Travis B; Schoffelen, Niels J; Ferdelman, Timothy G; Rebello, Osmond; Khachikyan, Alexander; Könneke, Martin (2020): Carbon recycling efficiency and phosphate turnover by marine nitrifying archaea. Science Advances, 6(19), eaba1799, https://doi.org/10.1126/sciadv.aba1799

Coverage:

Date/Time Start: 2016-08-25T00:00:00 * Date/Time End: 2017-02-14T00:00:00

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Strain	Strain		Meador, Travis B	Category
2	DATE/TIME	Date/Time		Meador, Travis B	Category	Geocode – experiment date
3	Phosphate	[PO4]3-	µmol/l	Meador, Travis B	Measured	Initial phosphate concentration
4	Time point, descriptive	Time point		Meador, Travis B	Category
5	Time, incubation	T incubation	days	Meador, Travis B	Measured
6	Volume	Vol	ml	Meador, Travis B	Measured	culture volume
7	Nitrite	[NO2]-	mmol/l	Meador, Travis B	Measured	average nitrite concentration
8	Nitrite, standard deviation	[NO2]- std dev	±	Meador, Travis B	Measured	standard deviation of nitrite concentration
9	Archaea	Archaea	#/ml	Meador, Travis B	Measured	average cell density
10	Archaea, standard deviation	Archaea std dev	±	Meador, Travis B	Measured	standard deviation of cell density
11	Phosphate uptake	PO4 upt	%	Meador, Travis B	Measured	average % uptake of 33P orthophosphate
12	Phosphate uptake, standard deviation	PO4 upt std dev	±	Meador, Travis B	Measured	standard deviation of % uptake of 33P orthophosphate
13	Bicarbonate uptake	[HCO3]- upt	%	Meador, Travis B	Measured	average % uptake of 14C bicarbonate
14	Bicarbonate uptake rate, standard deviation	[HCO3]- upt rate std dev	±	Meador, Travis B	Measured	standard deviation of % uptake of 14C bicarbonate
15	Phosphate turnover time	PO4 Tt	h	Meador, Travis B	Calculated	average phosphate turnover time
16	Specific phosphate affinity	Spec PO4 affinity	l/g/#/h	Meador, Travis B	Calculated	average cell specific affinity for phosphate
17	Phosphate uptake	PO4 upt	nmol/l	Meador, Travis B	Calculated	average phosphate uptake
18	Phosphate uptake, standard deviation	PO4 upt std dev	±	Meador, Travis B	Calculated	standard deviation of phosphate uptake
19	Bicarbonate uptake rate	HCO3 upt	nmol/l	Meador, Travis B	Calculated	average bicarbonate uptake
20	Bicarbonate uptake rate, standard deviation	[HCO3]- upt rate std dev	±	Meador, Travis B	Calculated	standard deviation of bicarbonate uptake
21	Bicarbonate/Phophate uptake ratio	HCO3/PO4 upt		Meador, Travis B	Calculated	bicarbonate:phosphate uptake ratio
22	Phosphate uptake rate	PO4 upt rate	nmol/l/h	Meador, Travis B	Calculated	volumetric phosphate uptake rate
23	Phosphate uptake rate per cell	PO4 upt rate/cell	zmol/#/h	Meador, Travis B	Calculated	average cellular phosphate uptake rate
24	Phosphate uptake rate per cell, standard deviation	PO4 upt rate/cell std dev	±	Meador, Travis B	Calculated	standard deviation of cellular phosphate uptake rate
25	Bicarbonate uptake rate per cell	HCO3 upt rate/cell	amol/#/h	Meador, Travis B	Calculated	average cellular bicarbonate uptake rate
26	Bicarbonate uptake rate per cell, standard deviation	HCO3 upt rate/cell std dev	±	Meador, Travis B	Calculated	standard deviation of cellular bicarbonate uptake rate
27	Linearity	LIN		Meador, Travis B	Calculated	1=yes, 0=no; time point is during period when uptake exhibited first-order kinetics
28	Specific phosphate affinity, standard deviation	Spec PO4 affinity std dev	±	Meador, Travis B	Calculated	standard deviation of cell specific affinity for phosphate
29	Phosphate turnover time, standard deviation	PO4 Tt std dev	±	Meador, Travis B	Calculated	standard deviation of phosphate turnover time
30	Specific phosphate affinity	Spec PO4 affinity	l/g/#/h	Meador, Travis B	Calculated	average cell specific affinity for phosphate
31	Affinity for phosphate, standard deviation	Affinity PO4 std dev	±	Meador, Travis B	Calculated	standard deviation of cell specific affinity for phosphate
32	Nitrification rate per cell	Nitrifi rate/cell	fmol/#/h	Meador, Travis B	Calculated	average cellular nitrite production rate
33	Nitrification rate per cell, standard deviation	Nitrifi rate/cell std dev	±	Meador, Travis B	Calculated	standard deviation of nitrite production rate
34	Nitrification rate	Nitrification	nmol/l/h	Meador, Travis B	Calculated	average volumetric nitrite production rate
35	Nitrification rate, standard deviation	Nitrifi rate std dev	±	Meador, Travis B	Calculated	standard deviation of volumetric nitrite production rate
36	Bicarbonate uptake rate	HCO3 upt	nmol/l/h	Meador, Travis B	Calculated	average volumetric bicarbonate uptake rate
37	Bicarbonate uptake rate, standard deviation	[HCO3]- upt rate std dev	±	Meador, Travis B	Calculated	standard deviation of volumetric bicarbonate uptake rate
38	Phosphate uptake rate	PO4 upt rate	nmol/l/h	Meador, Travis B	Calculated	average volumetric phosphate uptake rate
39	Phosphate uptake, standard deviation	PO4 upt std dev	±	Meador, Travis B	Calculated	standard deviation of volumetric phosphate uptake rate

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Size:

2787 data points

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