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Cline, Andrew J; Hamilton, Scott L; Logan, Cheryl A (2020): Seawater carbonate chemistry and metabolic enzyme activity assays of blue rockfish (Sebastes mystinus) [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.914045

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Keyword(s):
Animalia; Chordata; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Growth/Morphology; Laboratory experiment; Nekton; North Pacific; Other metabolic rates; Oxygen; Pelagos; Sebastes mystinus; Single species; Temperate
Related to:
Cline, Andrew J; Hamilton, Scott L; Logan, Cheryl A (2019): Effects of multiple climate change stressors on gene expression in blue rockfish (Sebastes mystinus). Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology, https://doi.org/10.1016/j.cbpa.2019.110580
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2019): seacarb: seawater carbonate chemistry with R. R package version 3.2.12. https://CRAN.R-project.org/package=seacarb
Project(s):
Ocean Acidification International Coordination Centre (OA-ICC)
Coverage:
Latitude: 36.561359 * Longitude: -121.946952
Date/Time Start: 2016-06-01T00:00:00 * Date/Time End: 2016-06-30T00:00:00
Event(s):
Stillwater_Cove * Latitude: 36.561359 * Longitude: -121.946952 * Date/Time Start: 2016-06-01T00:00:00 * Date/Time End: 2016-06-30T00:00:00 * Method/Device: Experiment (EXP)
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-03-18.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1TypeTypeCline, Andrew Jstudy
2SpeciesSpeciesCline, Andrew J
3Registration number of speciesReg spec noCline, Andrew J
4Uniform resource locator/link to referenceURL refCline, Andrew JWoRMS Aphia ID
5IdentificationIDCline, Andrew JFish
6Time point, descriptiveTime pointCline, Andrew J
7TreatmentTreatCline, Andrew J
8PositionPositionCline, Andrew J
9Citrate synthase activity per fresh massCS act/fmU/gCline, Andrew J
10Lactate dehydrogenaseLDHU/gCline, Andrew Jactivity, per fresh mass
11Citrate synthase activity/lactate dehydrogenase activityCS act/LDH actCline, Andrew Jper fresh mass
12Citrate synthase activity, unit per protein massCS/protU/mgCline, Andrew J
13Lactate dehydrogenase activity, unit per protein massLDH/protU/mgCline, Andrew J
14Citrate synthase activity/lactate dehydrogenase activityCS act/LDH actCline, Andrew Jper fresh protein
15MassMassgCline, Andrew J
16Fish, standard lengthFish SLmmCline, Andrew J
17Fish, total lengthFish TLmmCline, Andrew J
18SalinitySalCline, Andrew J
19Temperature, waterTemp°CCline, Andrew J
20Temperature, water, standard deviationTemp std dev±Cline, Andrew J
21pHpHCline, Andrew JSpectrophotometrictotal scale
22pH, standard deviationpH std dev±Cline, Andrew JSpectrophotometrictotal scale
23Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmCline, Andrew JCalculated using CO2SYS
24Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Cline, Andrew JCalculated using CO2SYS
25Carbon, inorganic, dissolvedDICµmol/kgCline, Andrew JCalculated using CO2SYS
26Carbon, inorganic, dissolved, standard deviationDIC std dev±Cline, Andrew JCalculated using CO2SYS
27Alkalinity, totalATµmol/kgCline, Andrew JPotentiometric titration
28Alkalinity, total, standard deviationAT std dev±Cline, Andrew JPotentiometric titration
29Oxygen, dissolvedDOmg/lCline, Andrew J
30Oxygen, dissolved, standard deviationDO std dev±Cline, Andrew J
31Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
32Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
33Carbon dioxide, standard deviationCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
34Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
35Fugacity of carbon dioxide in seawater, standard deviationfCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
36Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
37Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
38Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
39Bicarbonate ion, standard deviation[HCO3]- std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
40Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
41Carbonate ion, standard deviation[CO3]2- std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
42Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
43Carbon, inorganic, dissolved, standard deviationDIC std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
44Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
45Aragonite saturation state, standard deviationOmega Arg std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
46Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
47Calcite saturation state, standard deviationOmega Cal std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
5083 data points

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