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Harvey, Ben P; Agostini, Sylvain; Kon, Koetsu; Wada, Shigeki; Hall-Spencer, Jason M (2019): Seawater carbonate chemistry and photophysiology and production of Biddulphia biddulphiana [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.913812

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Keyword(s):
Biddulphia biddulphiana; Chromista; CO2 vent; Coast and continental shelf; Community composition and diversity; Entire community; Field observation; North Pacific; Ochrophyta; Pelagos; Phytoplankton; Primary production/Photosynthesis; Respiration; Single species; Temperate
Supplement to:
Harvey, Ben P; Agostini, Sylvain; Kon, Koetsu; Wada, Shigeki; Hall-Spencer, Jason M (2019): Diatoms Dominate and Alter Marine Food-Webs When CO2 Rises. Diversity, 11(12), 242, https://doi.org/10.3390/d11120242
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2019): seacarb: seawater carbonate chemistry with R. R package version 3.2.12. https://CRAN.R-project.org/package=seacarb
Coverage:
Latitude: 34.319170 * Longitude: 139.205000
Event(s):
Shikine * Latitude: 34.319170 * Longitude: 139.205000 * Method/Device: Experiment (EXP)
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-03-18.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1TypeTypeHarvey, Ben Pstudy
2SpeciesSpeciesHarvey, Ben P
3Registration number of speciesReg spec noHarvey, Ben P
4Uniform resource locator/link to referenceURL refHarvey, Ben PWoRMS Aphia ID
5SiteSiteHarvey, Ben P
6DiatomsDiatoms%Harvey, Ben P
7Fluorescence, minimumFoHarvey, Ben P
8Fluorescence, maximumFmHarvey, Ben P
9Maximum photochemical quantum yield of photosystem IIFv/FmHarvey, Ben P
10Maximum light use efficiencyalphamol e m2/mol RCII/mol photonsHarvey, Ben P
11Maximal absolute electron transfer rateETR maxmol e/mol RCII/sHarvey, Ben P
12Light saturation pointIkHarvey, Ben P
13ReplicatesRepl#Harvey, Ben P
14Net primary production of oxygen per chlorophyll aNPP O2/Chl amg/µg/hHarvey, Ben P
15Respiration rate oxygen per chlorophyll aResp O2/Chl amg/µg/hHarvey, Ben P
16Gross primary production of oxygen per chlorophyll aGPP O2/Chl amg/µg/hHarvey, Ben P
17Numbern#Harvey, Ben P
18Species richnessSHarvey, Ben P
19pHpHHarvey, Ben PPotentiometrictotal scale
20pH, standard deviationpH std dev±Harvey, Ben PPotentiometrictotal scale
21Temperature, waterTemp°CHarvey, Ben P
22Temperature, water, standard deviationTemp std dev±Harvey, Ben P
23SalinitySalHarvey, Ben P
24Salinity, standard deviationSal std dev±Harvey, Ben P
25Alkalinity, totalATµmol/kgHarvey, Ben PPotentiometric titration
26Alkalinity, total, standard deviationAT std dev±Harvey, Ben PPotentiometric titration
27Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmHarvey, Ben PCalculated using CO2SYS
28Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Harvey, Ben PCalculated using CO2SYS
29Carbon, inorganic, dissolvedDICµmol/kgHarvey, Ben PCalculated using CO2SYS
30Carbon, inorganic, dissolved, standard deviationDIC std dev±Harvey, Ben PCalculated using CO2SYS
31Bicarbonate ion[HCO3]-µmol/kgHarvey, Ben PCalculated using CO2SYS
32Bicarbonate ion, standard deviation[HCO3]- std dev±Harvey, Ben PCalculated using CO2SYS
33Carbonate ion[CO3]2-µmol/kgHarvey, Ben PCalculated using CO2SYS
34Carbonate ion, standard deviation[CO3]2- std dev±Harvey, Ben PCalculated using CO2SYS
35Calcite saturation stateOmega CalHarvey, Ben PCalculated using CO2SYS
36Calcite saturation state, standard deviationOmega Cal std dev±Harvey, Ben PCalculated using CO2SYS
37Aragonite saturation stateOmega ArgHarvey, Ben PCalculated using CO2SYS
38Aragonite saturation state, standard deviationOmega Arg std dev±Harvey, Ben PCalculated using CO2SYS
39Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
40Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
41Carbon dioxide, standard deviationCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
42Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
43Fugacity of carbon dioxide in seawater, standard deviationfCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
44Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
45Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
46Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
47Bicarbonate ion, standard deviation[HCO3]- std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
48Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
49Carbonate ion, standard deviation[CO3]2- std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
50Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
51Carbon, inorganic, dissolved, standard deviationDIC std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
52Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
53Aragonite saturation state, standard deviationOmega Arg std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
54Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
55Calcite saturation state, standard deviationOmega Cal std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
17717 data points

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