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Wall, Marlene; Prada, Fiorella; Fietzke, Jan; Caroselli, Erik; Dubinsky, Zvy; Brizi, Leonardo; Fantazzini, Paola; Franzellitti, Silvia; Montagna, Paolo; Falini, Giuseppe; Goffredo, Stefano (2019): Seawater carbonate chemistry and internal carbonate chemistry regulation and calcification in corals growing at a Mediterranean CO2 vent [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.911497, Supplement to: Wall, M et al. (2019): Linking Internal Carbonate Chemistry Regulation and Calcification in Corals Growing at a Mediterranean CO2 Vent. Frontiers in Marine Science, 6, https://doi.org/10.3389/fmars.2019.00699

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Abstract:
Corals exert a strong biological control over their calcification processes, but there is a lack of knowledge on their capability of long-term acclimatization to ocean acidification (OA). We used a dual geochemical proxy approach to estimate the calcifying fluid pH (pHcf) and carbonate chemistry of a Mediterranean coral (Balanophyllia europaea) naturally growing along a pH gradient (range: pHTS 8.07–7.74). The pHcf derived from skeletal boron isotopic composition (δ11B) was 0.3–0.6 units above seawater values and homogeneous along the gradient (mean +/- SEM: Site 1 = 8.39 +/- 0.03, Site 2 = 8.34 +/- 0.03, Site 3 = 8.34 +/- 0.02). Also carbonate ion concentration derived from B/Ca was homogeneous [mean +/- SEM (μmol /kg): Site 1 = 579 +/- 34, Site 2 = 541 +/- 27, Site 3 = 568 +/- 30] regardless of seawater pH. Furthermore, gross calcification rate (GCR, mass of CaCO3 deposited on the skeletal unit area per unit of time), estimated by a “bio-inorganic model” (IpHRAC), was homogeneous with decreasing pH. The homogeneous GCR, internal pH and carbonate chemistry confirm that the features of the “building blocks” – the fundamental structural components – produced by the biomineralization process were substantially unaffected by increased acidification. Furthermore, the pH up-regulation observed in this study could potentially explain the previous hypothesis that less “building blocks” are produced with increasing acidification ultimately leading to increased skeletal porosity and to reduced net calcification rate computed by including the total volume of the pore space. In fact, assuming that the available energy at the three sites is the same, this energy at the low pH sites could be partitioned among fewer calicoblastic cells that consume more energy given the larger difference between external and internal pH compared to the control, leading to the production of less building blocks (i.e., formation of pores inside the skeleton structure, determining increased porosity). However, we cannot exclude that also dissolution may play a role in increasing porosity. Thus, the ability of scleractinian corals to maintain elevated pHcf relative to ambient seawater might not always be sufficient to counteract declines in net calcification under OA scenarios.
Keyword(s):
Acid-base regulation; Animalia; Balanophyllia europaea; Benthic animals; Benthos; Calcification/Dissolution; Cnidaria; CO2 vent; Coast and continental shelf; Field observation; Mediterranean Sea; Single species; Temperate
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2019): seacarb: seawater carbonate chemistry with R. R package version 3.2.12. https://CRAN.R-project.org/package=seacarb
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-01-28.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
TypeTypeWall, Marlenestudy
SiteSiteWall, Marlene
SpeciesSpeciesWall, Marlene
Registration number of speciesReg spec noWall, MarleneWoRMS Aphia ID
Uniform resource locator/link to referenceURL refWall, Marlene
pHpHWall, Marlenetotal scale
δ11Bδ11B‰ SRMWall, Marleneskeletal
δ11B, standard deviationδ11B std dev±Wall, Marleneskeletal
Calcifying fluid, pHCF pHWall, Marlene
10 Calcifying fluid, pH, standard errorCF pH std e±Wall, Marlene
11 pH changeD pHWall, MarlenepH-up-regulation
12 pH change, standard errorpH change std e±Wall, MarlenepH-up-regulation
13 Boron/Calcium ratioB/Caµmol/molWall, Marlene
14 Boron/Calcium ratio, standard errorB/Ca std e±Wall, Marlene
15 Calcifying fluid, carbonate ionCF [CO3]2-µmol/kgWall, Marlene
16 Calcifying fluid, carbonate ion, standard errorCF [CO3]2- std e±Wall, Marlene
17 RatioRatioWall, MarleneDIC up-regulation (DICcf/DICsw)
18 Ratio, standard errorRatio std e±Wall, MarleneDIC up-regulation (DICcf/DICsw)
19 Calcifying fluid, dissolved inorganic carbonCF DICµmol/kgWall, Marlene
20 Calcifying fluid, dissolved inorganic carbon, standard errorCF DIC std e±Wall, Marlene
21 Calcifying fluid, aragonite saturation stateCF Omega ArgWall, Marlene
22 Gross calcification rate, relativeGCR relWall, MarleneRelative
23 Gross calcification rate of calcium carbonateGC CaCO3µmol/cm2/hWall, Marlene
24 Net calcification rate, relativeNCR relWall, MarleneRelative micro
25 Calcification rate of calcium carbonateCalc rate CaCO3g/cm2/aWall, Marlenemicro net
26 Net calcification rate, relativeNCR relWall, MarleneRelative bulk
27 Calcification rate of calcium carbonateCalc rate CaCO3g/cm2/aWall, Marlenebulk net
28 pHpHWall, Marlenetotal scale, min
29 pHpHWall, Marlenetotal scale, max
30 Temperature, waterTemp°CWall, Marlenemean
31 Temperature, waterTemp°CWall, Marlenemin
32 Temperature, waterTemp°CWall, Marlenemax
33 Alkalinity, totalATµmol/kgWall, Marlenemean
34 Alkalinity, totalATµmol/kgWall, Marlenemin
35 Alkalinity, totalATµmol/kgWall, Marlenemax
36 SalinitySalWall, Marlenemean
37 SalinitySalWall, Marlenemin
38 SalinitySalWall, Marlenemax
39 Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
40 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
41 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
42 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
43 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
44 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
45 Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
46 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
47 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
1459 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Type
(study)

Site

Species

Reg spec no
(WoRMS Aphia ID)

URL ref

pH
(total scale)

δ11B [‰ SRM]
(skeletal)

δ11B std dev [±]
(skeletal)

CF pH
10 
CF pH std e [±]
11 
D pH
(pH-up-regulation)
12 
pH change std e [±]
(pH-up-regulation)
13 
B/Ca [µmol/mol]
14 
B/Ca std e [±]
15 
CF [CO3]2- [µmol/kg]
16 
CF [CO3]2- std e [±]
17 
Ratio
(DIC up-regulation (DICcf/DICsw))
18 
Ratio std e [±]
(DIC up-regulation (DICcf/DICsw))
19 
CF DIC [µmol/kg]
20 
CF DIC std e [±]
21 
CF Omega Arg
22 
GCR rel
(Relative)
23 
GC CaCO3 [µmol/cm2/h]
24 
NCR rel
(Relative micro)
25 
Calc rate CaCO3 [g/cm2/a]
(micro net)
26 
NCR rel
(Relative bulk)
27 
Calc rate CaCO3 [g/cm2/a]
(bulk net)
28 
pH
(total scale, min)
29 
pH
(total scale, max)
30 
Temp [°C]
(mean)
31 
Temp [°C]
(min)
32 
Temp [°C]
(max)
33 
AT [µmol/kg]
(mean)
34 
AT [µmol/kg]
(min)
35 
AT [µmol/kg]
(max)
36 
Sal
(mean)
37 
Sal
(min)
38 
Sal
(max)
39 
CSC flag
40 
CO2 [µmol/kg]
41 
fCO2water_SST_wet [µatm]
42 
pCO2water_SST_wet [µatm]
43 
[HCO3]- [µmol/kg]
44 
[CO3]2- [µmol/kg]
45 
DIC [µmol/kg]
46 
Omega Arg
47 
Omega Cal
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