Vad, Johanne; Dunnett, F; Liu, F; Montagner, Cassiana C; Roberts, John M; Henry, Theodore Burdick (2020): Results of Halichondria panicea exposure experiment to crude oil and dipsersant contaminated seawater [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.911489
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Published: 2020-01-29 • DOI registered: 2020-07-08
Abstract:
In this study, two exposure experiments were conducted to determine the potential impacts of an oil spill and the use of dispersant on sponge model Halichondria panicea. First sponge samples were exposed for 48h to (1) water accommodated oil fraction (WAF), (2) chemically enhanced water accommodated oil fraction (CEWAF), (3) dispersant contaminated seawater, (4) Benzo-A-Pyrene in seawater and (5) DMSO in seawater. Clearance rate for each sponge samples was measured before (time point 1), during (time point 2) and after (time point 3) the exposure. Sponge tissue samples were also collected to conduct a transcriptomic analysis of sponge gene expression response. Second a new set of sponge samples were exposed for 48h to WAF and CEWAF solutions produced with increasing oil loadings. Clearance rate was measured in each samples at the end of the exposure and tissue samples were collected to determine the gene expression levels of three genes of interest (by qPCR).
Supplement to:
Vad, Johanne; Dunnett, F; Liu, F; Montagner, Cassiana C; Roberts, John M; Henry, Theodore Burdick (2020): Soaking up the oil: Biological impacts of dispersants and crude oil on the sponge Halichondria panicea. Chemosphere, 257, 127109, https://doi.org/10.1016/j.chemosphere.2020.127109
Related to:
Vad, Johanne; Dunnett, F; Liu, F; Montagner, Cassiana C; Roberts, John M; Henry, Theodore Burdick (2020): Hydrocarbon data of the cold-water sponge Halichondria panicea exposure experiment to crude oil and dipsersant contaminated seawater [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.911490
Parameter(s):
| # | Name | Short Name | Unit | Principal Investigator | Method/Device | Comment |
|---|---|---|---|---|---|---|
| 1 | Experiment | Exp | Vad, Johanne | Type of experiment | ||
| 2 | Treatment | Treat | Vad, Johanne | |||
| 3 | Time point, descriptive | Time point | Vad, Johanne | before (1), during (2) and after exposure (3) | ||
| 4 | Sample ID | Sample ID | Vad, Johanne | |||
| 5 | Oil loading per seawater | Oil load sw | g/l | Vad, Johanne | ||
| 6 | Halichondria panicea, clearance rate, seawater cleared per tissue volume | H. panicea CR sw min tissue | cm3/min/cm3 | Vad, Johanne | ||
| 7 | Halichondria panicea, cyclophilin | H. panicea cyclophilin | Vad, Johanne | |||
| 8 | Halichondria panicea, cytochrome b5 | H. panicea cytochrome b5 | Vad, Johanne | |||
| 9 | Halichondria panicea, heat shock protein 70, log fold change | H. panicea Hsp70 logFC | Vad, Johanne |
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Size:
640 data points
Data
| 1 Exp | 2 Treat | 3 Time point | 4 Sample ID | 5 Oil load sw [g/l] | 6 H. panicea CR sw min tissue [cm3/min/cm3] | 7 H. panicea cyclophilin | 8 H. panicea cytochrome b5 | 9 H. panicea Hsp70 logFC |
|---|---|---|---|---|---|---|---|---|
| Single Concentration | Control | 1 | UEDIN5_1 | 0.00 | 2.685000000 | |||
| Single Concentration | Control | 1 | UEDIN5_2 | 0.00 | 1.060000000 | |||
| Single Concentration | Control | 1 | UEDIN5_3 | 0.00 | 0.520000000 | |||
| Single Concentration | DMSO | 1 | UEDIN5_4 | 0.00 | 1.005000000 | |||
| Single Concentration | DMSO | 1 | UEDIN5_5 | 0.00 | 1.502000000 | |||
| Single Concentration | DMSO | 1 | UEDIN5_6 | 0.00 | 2.173000000 | |||
| Single Concentration | WAF | 1 | UEDIN5_7 | 1.00 | 1.972000000 | |||
| Single Concentration | WAF | 1 | UEDIN5_8 | 1.00 | 1.831000000 | |||
| Single Concentration | WAF | 1 | UEDIN5_9 | 1.00 | 4.889000000 | |||
| Single Concentration | CEWAF | 1 | UEDIN5_10 | 1.00 | 4.071000000 | |||
| Single Concentration | CEWAF | 1 | UEDIN5_11 | 1.00 | 3.176000000 | |||
| Single Concentration | CEWAF | 1 | UEDIN5_12 | 1.00 | 1.273000000 | |||
| Single Concentration | BaP | 1 | UEDIN5_13 | 2.502000000 | ||||
| Single Concentration | BaP | 1 | UEDIN5_14 | 4.725000000 | ||||
| Single Concentration | BaP | 1 | UEDIN5_15 | 3.844000000 | ||||
| Single Concentration | Control | 2 | UEDIN5_1 | 0.00 | 3.637000000 | |||
| Single Concentration | Control | 2 | UEDIN5_2 | 0.00 | 1.144000000 | |||
| Single Concentration | Control | 2 | UEDIN5_3 | 0.00 | 0.683000000 | |||
| Single Concentration | DMSO | 2 | UEDIN5_4 | 0.00 | 1.016000000 | |||
| Single Concentration | DMSO | 2 | UEDIN5_5 | 0.00 | 1.399000000 | |||
| Single Concentration | DMSO | 2 | UEDIN5_6 | 0.00 | 2.941000000 | |||
| Single Concentration | WAF | 2 | UEDIN5_7 | 1.00 | 0.446000000 | |||
| Single Concentration | WAF | 2 | UEDIN5_8 | 1.00 | 0.766000000 | |||
| Single Concentration | WAF | 2 | UEDIN5_9 | 1.00 | 0.110000000 | |||
| Single Concentration | CEWAF | 2 | UEDIN5_10 | 1.00 | 0.809000000 | |||
| Single Concentration | CEWAF | 2 | UEDIN5_11 | 1.00 | 1.644000000 | |||
| Single Concentration | CEWAF | 2 | UEDIN5_12 | 1.00 | 0.582000000 | |||
| Single Concentration | BaP | 2 | UEDIN5_13 | 0.240000000 | ||||
| Single Concentration | BaP | 2 | UEDIN5_14 | 0.633000000 | ||||
| Single Concentration | BaP | 2 | UEDIN5_15 | 0.420000000 | ||||
| Single Concentration | Control | 3 | UEDIN5_1 | 0.00 | 2.660000000 | |||
| Single Concentration | Control | 3 | UEDIN5_2 | 0.00 | 1.003000000 | |||
| Single Concentration | Control | 3 | UEDIN5_3 | 0.00 | 0.666000000 | |||
| Single Concentration | DMSO | 3 | UEDIN5_4 | 0.00 | 1.049000000 | |||
| Single Concentration | DMSO | 3 | UEDIN5_5 | 0.00 | 1.598000000 | |||
| Single Concentration | DMSO | 3 | UEDIN5_6 | 0.00 | 2.671000000 | |||
| Single Concentration | WAF | 3 | UEDIN5_7 | 1.00 | 0.156000000 | |||
| Single Concentration | WAF | 3 | UEDIN5_8 | 1.00 | 0.197000000 | |||
| Single Concentration | WAF | 3 | UEDIN5_9 | 1.00 | 0.447000000 | |||
| Single Concentration | CEWAF | 3 | UEDIN5_10 | 1.00 | 0.307000000 | |||
| Single Concentration | CEWAF | 3 | UEDIN5_11 | 1.00 | 0.911000000 | |||
| Single Concentration | CEWAF | 3 | UEDIN5_12 | 1.00 | 0.600000000 | |||
| Single Concentration | BaP | 3 | UEDIN5_13 | 0.287000000 | ||||
| Single Concentration | BaP | 3 | UEDIN5_14 | 0.533000000 | ||||
| Single Concentration | BaP | 3 | UEDIN5_15 | 0.265000000 | ||||
| Dose Response | CEWAF | UEDIN7_1 | 0.00 | 1.662520595 | 1.395084397 | 1.703440659 | 1.301446529 | |
| Dose Response | CEWAF | UEDIN7_2 | 0.00 | 1.113291209 | 1.657531550 | 1.244965843 | 0.793474894 | |
| Dose Response | CEWAF | UEDIN7_3 | 0.00 | 1.042741921 | 0.432451806 | 0.803234889 | 0.968368114 | |
| Dose Response | CEWAF | UEDIN7_4 | 0.00 | 0.256163267 | 3.321952637 | 2.428560374 | ||
| Dose Response | CEWAF | UEDIN7_5 | 0.50 | 0.047564685 | 24.730076700 | 2.941849162 | 2.192182129 | |
| Dose Response | CEWAF | UEDIN7_6 | 0.50 | 0.073211966 | 3.189620946 | 2.531708696 | 2.046840269 | |
| Dose Response | CEWAF | UEDIN7_7 | 0.50 | 0.020833388 | ||||
| Dose Response | CEWAF | UEDIN7_8 | 1.00 | 0.015248514 | 2.070823499 | |||
| Dose Response | CEWAF | UEDIN7_9 | 2.50 | 0.053846197 | 7.900913269 | 1.934465252 | ||
| Dose Response | CEWAF | UEDIN7_10 | 3.50 | 0.051058445 | 1.329574821 | 2.729026701 | ||
| Dose Response | CEWAF | UEDIN7_11 | 5.00 | 0.011897307 | 1.344896362 | |||
| Dose Response | CEWAF | UEDIN7_12 | 7.50 | 0.047390631 | 1.490256072 | |||
| Dose Response | CEWAF | UEDIN7_13 | 7.50 | 0.095570854 | ||||
| Dose Response | CEWAF | UEDIN7_14 | 10.00 | 0.052115443 | 0.899721823 | 0.776322729 | 1.023999812 | |
| Dose Response | CEWAF | UEDIN4_1 | 0.00 | 3.236711832 | 1.017023210 | 1.288124079 | 0.976562679 | |
| Dose Response | CEWAF | UEDIN4_2 | 0.00 | 1.617010005 | 1.092850817 | |||
| Dose Response | CEWAF | UEDIN4_3 | 0.00 | 1.752165817 | 9.229753041 | 4.770521194 | 4.809637322 | |
| Dose Response | CEWAF | UEDIN4_4 | 0.01 | 1.477081024 | 4.060286540 | 4.029877068 | 2.276615168 | |
| Dose Response | CEWAF | UEDIN4_5 | 0.03 | 0.796309238 | 2.238320073 | |||
| Dose Response | CEWAF | UEDIN4_6 | 0.05 | 0.488060386 | 0.457805015 | |||
| Dose Response | CEWAF | UEDIN4_7 | 0.10 | 0.688188131 | ||||
| Dose Response | CEWAF | UEDIN4_8 | 0.50 | 0.311860017 | 16.588669210 | 13.031374390 | ||
| Dose Response | CEWAF | UEDIN4_9 | 0.50 | 0.505849846 | 1.271594405 | |||
| Dose Response | CEWAF | UEDIN4_10 | 0.50 | 0.507809861 | ||||
| Dose Response | CEWAF | UEDIN4_11 | 1.00 | 0.327877988 | 3.195950478 | 3.956203707 | ||
| Dose Response | CEWAF | UEDIN4_12 | 5.00 | 0.287662030 | ||||
| Dose Response | WAF | UEDIN 6 | UEDIN6_1 | 0.00 | 2.031121623 | 1.755807961 | 0.804290201 | 1.042144147 |
| Dose Response | WAF | UEDIN 6 | UEDIN6_2 | 0.00 | 1.708818804 | 1.020900805 | 1.173204878 | 1.427455058 |
| Dose Response | WAF | UEDIN 6 | UEDIN6_3 | 0.00 | 1.286573289 | 1.000000000 | 1.059774248 | 0.672217420 |
| Dose Response | WAF | UEDIN 6 | UEDIN6_4 | 0.00 | 1.705318745 | 0.797451858 | ||
| Dose Response | WAF | UEDIN 6 | UEDIN6_5 | 0.50 | 1.379654611 | 1.046213032 | 26.239154460 | 0.677056658 |
| Dose Response | WAF | UEDIN 6 | UEDIN6_6 | 0.50 | 0.966014052 | 0.325509088 | 0.364673242 | |
| Dose Response | WAF | UEDIN 6 | UEDIN6_7 | 0.50 | 0.963642341 | 0.728541780 | ||
| Dose Response | WAF | UEDIN 6 | UEDIN6_8 | 2.50 | 0.993855235 | 2.333703509 | 7.740346733 | 0.437806118 |
| Dose Response | WAF | UEDIN 6 | UEDIN6_9 | 3.50 | 0.677133842 | 2.998129243 | 13.815828570 | 0.853562889 |
| Dose Response | WAF | UEDIN 6 | UEDIN6_10 | 5.00 | 0.418417639 | 1.813003747 | 10.998329550 | 0.635056065 |
| Dose Response | WAF | UEDIN 6 | UEDIN6_11 | 7.50 | 0.366922299 | 2.052611122 | 0.932357696 | |
| Dose Response | WAF | UEDIN 6 | UEDIN6_12 | 7.50 | 0.392271458 | 5.579951505 | 0.886471938 | |
| Dose Response | WAF | UEDIN 6 | UEDIN6_13 | 10.00 | 0.308186260 | 1.972749048 | 0.208772744 | |
| Dose Response | WAF | UEDIN 3 | UEDIN_1 | 0.00 | 5.458808499 | 0.191411439 | 1.340369472 | |
| Dose Response | WAF | UEDIN 3 | UEDIN_2 | 0.00 | 3.148186900 | 0.270034807 | 1.147721190 | 1.036447376 |
| Dose Response | WAF | UEDIN 3 | UEDIN_3 | 0.00 | 4.844607784 | 0.338417104 | 0.650038489 | 0.964834320 |
| Dose Response | WAF | UEDIN 3 | UEDIN_4 | 0.01 | 2.928316192 | |||
| Dose Response | WAF | UEDIN 3 | UEDIN_5 | 0.03 | 0.913221744 | 14.285078050 | 7.910569726 | 13.264054250 |
| Dose Response | WAF | UEDIN 3 | UEDIN_6 | 0.05 | 1.845663400 | 14.045378390 | 10.132109710 | 11.684424950 |
| Dose Response | WAF | UEDIN 3 | UEDIN_7 | 0.10 | 1.039850480 | 7.947892721 | 6.431195704 | 8.271054220 |
| Dose Response | WAF | UEDIN 3 | UEDIN_8 | 0.50 | 1.448430450 | 9.248508194 | 16.114988570 | 14.720590130 |
| Dose Response | WAF | UEDIN 3 | UEDIN_9 | 0.50 | 0.939134025 | |||
| Dose Response | WAF | UEDIN 3 | UEDIN_10 | 0.50 | 1.969136969 | 0.785004504 | ||
| Dose Response | WAF | UEDIN 3 | UEDIN_11 | 1.00 | 1.054224303 | 1.860342992 | ||
| Dose Response | WAF | UEDIN 3 | UEDIN_12 | 5.00 | 0.471374445 | 1.152556335 | 2.069494886 |