Citation:

PANGAEA.911443

Name: Hydrocarbon data of the cold-water sponge Halichondria panicea exposure experiment to Benzo-A-Pyrene
Published: 2020-01-28
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Benzo-A-Pyrene; Poly Aromatic Hydrocarbons; qPCR; sponge

Always quote citation above when using data! You can download the citation in several formats below.

Published: 2020-01-28 • DOI registered: 2020-06-17

RIS Citation BibTeX Citation Text Citation Share

Abstract:

In this study, inter-tidal cold-water sponge Halichondria panicea samples were exposed to Benzo-A-pyrene for 48h (accumulation phase) and then left to recover for 13 days in clean seawater (depuration phase). Tissue samples were collected at multiple time points during the accumulation phase to conduct qPCR targeting several genes of interest. Tissue samples were also collected during the accumulation and depuration phases to determine concentration of hydrocarbon in the sponge tissue. The files provided here detail (1) the hydrocarbon data determined by GC/MS analysis and (2) the sponge log fold change data for four genes of interest derived by qPCR.

Keyword(s):

Benzo-A-Pyrene; Poly Aromatic Hydrocarbons; qPCR; sponge

Project(s):

A Trans-Atlantic assessment and deep-water ecosystem-based spatial management plan for Europe (ATLAS)

Funding:

Horizon 2020 (H2020), grant/award no. 678760 : A Trans-Atlantic assessment and deep-water ecosystem-based spatial management plan for Europe

Comment:

Entries starting with "<" means that the concentration was below the limit of detection given after the sign "<".

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Sample ID	Sample ID		Vad, Johanne
2	Experiment	Exp		Vad, Johanne		Phase of experiment
3	Status	Status		Vad, Johanne		State
4	Treatment	Treat		Vad, Johanne
5	Replicates	Repl	#	Vad, Johanne
6	Duration	Duration		Vad, Johanne		Time
7	Naphthalene	Naphth	µg/g	Vad, Johanne	Gas chromatography - Mass spectrometry (GC-MS)
8	Acenaphthylene	Acenaphthylene	µg/g	Vad, Johanne	Gas chromatography - Mass spectrometry (GC-MS)
9	Acenaphthene	Acenaphthene	µg/g	Vad, Johanne	Gas chromatography - Mass spectrometry (GC-MS)
10	Fluorene	Fluorene	µg/g	Vad, Johanne	Gas chromatography - Mass spectrometry (GC-MS)
11	Phenanthrene	Phenanthrene	µg/g	Vad, Johanne	Gas chromatography - Mass spectrometry (GC-MS)
12	Anthracene	Anthracene	µg/g	Vad, Johanne	Gas chromatography - Mass spectrometry (GC-MS)
13	Fluoranthene	Fluoranthene	µg/g	Vad, Johanne	Gas chromatography - Mass spectrometry (GC-MS)
14	Pyrene	Pyrene	µg/g	Vad, Johanne	Gas chromatography - Mass spectrometry (GC-MS)
15	Benzo(a)anthracene	Benzo(a)anthracene	µg/g	Vad, Johanne	Gas chromatography - Mass spectrometry (GC-MS)
16	Chrysene	Chrysene	µg/g	Vad, Johanne	Gas chromatography - Mass spectrometry (GC-MS)
17	Benzo(b)fluoranthene	Benzo(b)fluoranthene	µg/g	Vad, Johanne	Gas chromatography - Mass spectrometry (GC-MS)
18	Benzo(k)fluoranthene	Benzo(k)fluoranthene	µg/g	Vad, Johanne	Gas chromatography - Mass spectrometry (GC-MS)
19	Benzo(a)pyrene	Benzo(a)pyrene	µg/g	Vad, Johanne	Gas chromatography - Mass spectrometry (GC-MS)
20	Indeno(1,2,3-cd)pyrene	Indeno(1,2,3-cd)py	µg/g	Vad, Johanne	Gas chromatography - Mass spectrometry (GC-MS)
21	Dibenzo(a,h)anthracene	Dibenzo(a,h)anth	µg/g	Vad, Johanne	Gas chromatography - Mass spectrometry (GC-MS)
22	Benzo(g,h,i)perylene	Benzo(g,h,i)perylene	µg/g	Vad, Johanne	Gas chromatography - Mass spectrometry (GC-MS)
23	Polycyclic aromatic hydrocarbons	PAH	µg/g	Vad, Johanne	Gas chromatography - Mass spectrometry (GC-MS)

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Size:

966 data points

Data

Download dataset as tab-delimited text — use the following character encoding:

1 Sample ID	2 Exp	3 Status	4 Treat	5 Repl [#]	6 Duration	7 Naphth [µg/g]	8 Acenaphthylene [µg/g]	9 Acenaphthene [µg/g]	10 Fluorene [µg/g]	11 Phenanthrene [µg/g]	12 Anthracene [µg/g]	13 Fluoranthene [µg/g]	14 Pyrene [µg/g]	15 Benzo(a)anthracene [µg/g]	16 Chrysene [µg/g]	17 Benzo(b)fluoranthene [µg/g]	18 Benzo(k)fluoranthene [µg/g]	19 Benzo(a)pyrene [µg/g]	20 Indeno(1,2,3-cd)py [µg/g]	21 Dibenzo(a,h)anth [µg/g]	22 Benzo(g,h,i)perylene [µg/g]	23 PAH [µg/g]
UEDIN1B-2019-CO1-T0	Accumulation	Solid	Control	1	T0	<0.48	<0.48	<0.95	<0.48	<0.95	<0.95	<0.95	<0.95	<0.95	<0.95	<0.48	<0.48	<0.48	<0.950	<0.95	<0.95	<13.000
UEDIN1B-2019-CO2-T0	Accumulation	Solid	Control	2	T0	<0.77	<0.77	<1.54	<0.77	<1.54	<1.54	<1.54	<1.54	<1.54	<1.54	<0.77	<0.77	<0.77	<1.540	<1.54	<1.54	<20.000
UEDIN1B-2019-CO3-T0	Accumulation	Solid	Control	3	T0	<0.77	<0.77	<1.54	<0.77	<1.54	<1.54	<1.54	<1.54	<1.54	<1.54	<0.77	<0.77	<0.77	<1.540	<1.54	<1.54	<20.000
UEDIN1B-2019-CO1-T6	Accumulation	Solid	Control	1	T6	<0.53	<0.53	<1.05	<0.53	<1.05	<1.05	<1.05	<1.05	<1.05	<1.05	<0.53	<0.53	<0.53	<1.050	<1.05	<1.05	<14.000
UEDIN1B-2019-CO2-T6	Accumulation	Solid	Control	2	T6	<0.07	<0.07	<0.15	<0.07	<0.15	<0.15	<0.15	<0.15	<0.15	<0.15	<0.07	<0.07	<0.07	<0.150	<0.15	<0.15	<2.000
UEDIN1B-2019-CO3-T6	Accumulation	Solid	Control	3	T6	<0.83	<0.83	<1.67	<0.83	<1.67	<1.67	<1.67	<1.67	<1.67	<1.67	<0.83	<0.83	<0.83	<1.670	<1.67	<1.67	<22.000
UEDIN1B-2019-CO1-T48	Accumulation	Solid	Control	1	T48H	<1.11	<1.11	<2.22	<1.11	<2.22	<2.22	<2.22	<2.22	<2.22	<2.22	<1.11	<1.11	<1.11	<2.220	<2.22	<2.22	<29.000
UEDIN1B-2019-CO2-T48	Accumulation	Solid	Control	2	T48H	<1.11	<1.11	<2.22	<1.11	<2.22	<2.22	<2.22	<2.22	<2.22	<2.22	<1.11	<1.11	<1.11	<2.220	<2.22	<2.22	<29.000
UEDIN1B-2019-CO3-T48	Accumulation	Solid	Control	3	T48H	<0.36	<0.36	<0.71	<0.36	<0.71	<0.71	<0.71	<0.71	<0.71	<0.71	<0.36	<0.36	<0.36	<0.710	<0.71	<0.71	<10.000
UEDIN1B-2019-1UGL1-T0	Accumulation	Solid	1.0 ug/L	1	T0H	<0.71	<0.71	<1.43	<0.71	<1.43	<1.43	<1.43	<1.43	<1.43	<1.43	<0.71	<0.71	<0.71	<1.430	<1.43	<1.43	<19.000
UEDIN1B-2019-1UGL2-T0	Accumulation	Solid	1.0 ug/L	2	T0H	<0.71	<0.71	<1.43	<0.71	<1.43	<1.43	<1.43	<1.43	<1.43	<1.43	<0.71	<0.71	<0.71	<1.430	<1.43	<1.43	<19.000
UEDIN1B-2019-1UGL3-T0	Accumulation	Solid	1.0 ug/L	3	T0H	<1.43	<1.43	<2.86	<1.43	<2.86	<2.86	<2.86	<2.86	<2.86	<2.86	<1.43	<1.43	<1.43	<2.860	<2.86	<2.86	<38.000
UEDIN1B-2019-1UGL1-T6	Accumulation	Solid	1.0 ug/L	1	T6H	<0.77	<0.77	<1.54	<0.77	<1.54	<1.54	<1.54	<1.54	<1.54	<1.54	<0.77	<0.77	<0.77	<1.540	<1.54	<1.54	<20.000
UEDIN1B-2019-1UGL2-T6	Accumulation	Solid	1.0 ug/L	2	T6H	<0.56	<0.56	<1.11	<0.56	<1.11	<1.11	<1.11	<1.11	<1.11	<1.11	<0.56	<0.56	<0.56	<1.110	<1.11	<1.11	<15.000
UEDIN1B-2019-1UGL3-T6	Accumulation	Solid	1.0 ug/L	3	T6H	<0.53	<0.53	<1.05	<0.53	<1.05	<1.05	<1.05	<1.05	<1.05	<1.05	<0.53	<0.53	<0.53	<1.050	<1.05	<1.05	<14.000
UEDIN1B-2019-1UGL1-T48	Accumulation	Solid	1.0 ug/L	1	48H	<0.71	<0.71	<1.43	<0.71	<1.43	<1.43	<1.43	<1.43	<1.43	<1.43	<0.71	<0.71	<0.71	<1.430	<1.43	<1.43	<19.000
UEDIN1B-2019-1UGL2-T48	Accumulation	Solid	1.0 ug/L	2	48H	<2.00	<2.00	<4.00	<2.00	<4.00	<4.00	<4.00	<4.00	<4.00	<4.00	<2.00	<2.00	<2.00	<4.000	<4.00	<4.00	<52.000
UEDIN1B-2019-1UGL3-T48	Accumulation	Solid	1.0 ug/L	3	48H	<0.77	<0.77	<1.54	<0.77	<1.54	<1.54	<1.54	<1.54	<1.54	<1.54	<0.77	<0.77	<0.77	<1.540	<1.54	<1.54	<20.000
UEDIN1C-2019-CO1-T48H	Depuration	Solid	Control	1	48H	<1.43	<1.43	<2.86	<1.43	<2.86	<2.86	<2.86	<2.86	<2.86	<2.86	<1.43	<1.43	<1.43	<2.860	<2.86	<2.86	<38.000
UEDIN1C-2019-CO2-T48H	Depuration	Solid	Control	2	48H	<0.59	<0.59	<1.18	<0.59	<1.18	<1.18	<1.18	<1.18	<1.18	<1.18	<0.59	<0.59	<0.59	<1.180	<1.18	<1.18	<16.000
UEDIN1C-2019-CO3-T48H	Depuration	Solid	Control	3	48H	<0.30	<0.30	<0.61	<0.30	<0.61	<0.61	<0.61	<0.61	<0.61	<0.61	<0.30	<0.30	<0.30	<0.610	<0.61	<0.61	<8.000
UEDIN1C-2019-CO1-T3D	Depuration	Solid	Control	1	T3D	<1.67	<1.67	<3.33	<1.67	<3.33	<3.33	<3.33	<3.33	<3.33	<3.33	<1.67	<1.67	<1.67	<3.330	<3.33	<3.33	<44.000
UEDIN1C-2019-CO2-T3D	Depuration	Solid	Control	2	T3D	<1.67	<1.67	<1.67	<1.67	<3.33	<3.33	<3.33	<3.33	<3.33	<3.33	<1.67	<1.67	<1.67	<3.330	<3.33	<3.33	<44.000
UEDIN1C-2019-CO3-T3D	Depuration	Solid	Control	3	T3D	<0.63	<0.63	<1.25	<0.63	<1.25	<1.25	<1.25	<1.25	<1.25	<1.25	<0.63	<0.63	<0.63	<1.250	<1.25	<1.25	<17.000
UEDIN1C-2019-CO1-T7D	Depuration	Solid	Control	1	T7D	<1.67	<1.67	3.33	<1.67	<3.33	<3.33	<3.33	<3.33	<3.33	<3.33	<1.67	<1.67	<1.67	<3.330	<3.33	<3.33	<44.000
UEDIN1C-2019-CO2-T7D	Depuration	Solid	Control	2	T7D	<1.43	<1.43	<2.86	<1.43	<2.86	<2.86	<2.86	<2.86	<2.86	<2.86	<1.43	<1.43	<1.43	<2.860	<2.86	<2.86	<38.000
UEDIN1C-2019-CO3-T7D	Depuration	Solid	Control	3	T7D	<2.00	<2.00	<4.00	<2.00	<4.00	<4.00	<4.00	<4.00	<4.00	<4.00	<2.00	<2.00	<2.00	<4.000	<4.00	<4.00	<52.000
UEDIN1C-2019-CO1-T13D	Depuration	Solid	Control	1	T13D	<1.11	<1.11	<2.22	<1.11	<2.22	<2.22	<2.22	<2.22	<2.22	<2.22	<1.11	<1.11	<1.11	<2.220	<2.22	<2.22	<29.000
UEDIN1C-2019-CO2-T13D	Depuration	Solid	Control	2	T13D	<2.00	<2.00	<4.00	<2.00	<4.00	<4.00	<4.00	<4.00	<4.00	<4.00	<2.00	<2.00	<2.00	<4.000	<4.00	<4.00	<52.000
UEDIN1C-2019-CO3-T13D	Depuration	Solid	Control	3	T13D	<1.43	<1.43	<2.86	<1.43	<2.86	<2.86	<2.86	<2.86	<2.86	<2.86	<1.43	<1.43	<1.43	<2.860	<2.86	<2.86	<38.000
UEDIN1C-2019-1UGL1-T48H	Depuration	Solid	1,0 ug/L	1	48H	<0.77	<0.77	<1.54	<0.77	<1.54	<1.54	<1.54	<1.54	<1.54	<1.54	<0.77	<0.77	<0.77	<1.540	<1.54	<1.54	<20.000
UEDIN1C-2019-1UGL2-T48H	Depuration	Solid	1,0 ug/L	2	48H	<0.31	<0.31	<0.63	<0.31	<0.63	<0.63	<0.63	<0.63	<0.63	<0.63	<0.31	<0.31	<0.31	<0.630	<0.63	<0.63	<9.000
UEDIN1C-2019-1UGL3-T48H	Depuration	Solid	1,0 ug/L	3	48H	<0.37	<0.37	<0.74	<0.37	<0.74	<0.74	<0.74	<0.74	<0.74	<0.74	<0.37	<0.37	<0.37	<0.740	<0.74	<0.74	<10.000
UEDIN1C-2019-1UGL1-T3D	Depuration	Solid	1,0 ug/L	1	T3D	<1.11	<1.11	<2.22	<1.11	<2.22	<2.22	<2.22	<2.22	<2.22	<2.22	<1.11	<1.11	<1.11	<2.220	<2.22	<2.22	<29.000
UEDIN1C-2019-1UGL2-T3D	Depuration	Solid	1,0 ug/L	2	T3D	<1.00	<1.00	<2.00	<1.00	<2.00	<2.00	<2.00	<2.00	<2.00	<2.00	<1.00	<1.00	<1.00	<2.000	<2.00	<2.00	<26.000
UEDIN1C-2019-1UGL3-T3D	Depuration	Solid	1,0 ug/L	3	T3D	0.53	0.53	<1.05	0.53	<1.05	<1.05	<1.05	<1.05	<1.05	<1.05	0.53	0.53	0.53	<1.050	<1.05	<1.05	<14.000
UEDIN1C-2019-1UGL1-T7D	Depuration	Solid	1,0 ug/L	1	T7D	<1.11	<1.11	<2.22	<1.11	<2.22	<2.22	<2.22	<2.22	<2.22	<2.22	<1.11	<1.11	<1.11	<2.220	<2.22	<2.22	<29.000
UEDIN1C-2019-1UGL2-T7D	Depuration	Solid	1,0 ug/L	2	T7D	<2.00	<2.00	<4.00	<2.00	<4.00	<4.00	<4.00	<4.00	<4.00	<4.00	<2.00	<2.00	<2.00	<4.000	<4.00	<4.00	<52.000
UEDIN1C-2019-1UGL3-T7D	Depuration	Solid	1,0 ug/L	3	T7D	<0.59	<0.59	<1.18	<0.59	<1.18	<1.18	<1.18	<1.18	<1.18	<1.18	<0.59	<0.59	<0.59	<1.180	<1.18	<1.18	<16.000
UEDIN1C-2019-1UGL1-T13D	Depuration	Solid	1,0 ug/L	1	T13D	<2.00	<2.00	<4.00	<2.00	<4.00	<4.00	<4.00	<4.00	<4.00	<4.00	<2.00	<2.00	<2.00	<4.000	<4.00	<4.00	<52.000
UEDIN1C-2019-1UGL2-T13D	Depuration	Solid	1,0 ug/L	2	T13D	<1.67	<1.67	<3.33	<1.67	<3.33	<3.33	<3.33	<3.33	<3.33	<3.33	<1.67	<1.67	<1.67	<3.330	<3.33	<3.33	<44.000
UEDIN1C-2019-1UGL3-T13D	Depuration	Solid	1,0 ug/L	3	T13D	<1.11	<1.11	<2.22	<1.11	<2.22	<2.22	<2.22	<2.22	<2.22	<2.22	<1.11	<1.11	<1.11	<2.220	<2.22	<2.22	<29.000