Sokolova, Inna M; Falfushynska, Halina; Piontkivska, Helen (2019): Gene expression from the pacific oysters Crassostrea gigas and the blue mussels Mytilus edulis [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.909730, In supplement to: Falfushynska, Halina; Piontkivska, Helen; Sokolova, Inna M (2020): Effects of intermittent hypoxia on cell survival and inflammatory responses in the intertidal marine bivalves Mytilus edulis and Crassostrea gigas. Journal of Experimental Biology, 223(4), jeb217026, https://doi.org/10.1242/jeb.217026
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Parameter(s):
| # | Name | Short Name | Unit | Principal Investigator | Method/Device | Comment |
|---|---|---|---|---|---|---|
| 1 | Treatment | Treat | Sokolova, Inna M | Condition | ||
| 2 | Species | Species | Sokolova, Inna M | |||
| 3 | Tissues | Tissues | Sokolova, Inna M | |||
| 4 | Group | Group | Sokolova, Inna M | |||
| 5 | Ratio | Ratio | Sokolova, Inna M | Cas2, Target/reference ratio | ||
| 6 | Ratio | Ratio | Sokolova, Inna M | Cas3, Target/reference ratio | ||
| 7 | Ratio | Ratio | Sokolova, Inna M | Cas8, Target/reference ratio | ||
| 8 | Ratio | Ratio | Sokolova, Inna M | TAK1, Target/reference ratio | ||
| 9 | Ratio | Ratio | Sokolova, Inna M | NF-kB, Target/reference ratio | ||
| 10 | Ratio | Ratio | Sokolova, Inna M | Bcl2, Target/reference ratio | ||
| 11 | Ratio | Ratio | Sokolova, Inna M | BAX, Target/reference ratio | ||
| 12 | Ratio | Ratio | Sokolova, Inna M | IKK1, Target/reference ratio | ||
| 13 | Ratio | Ratio | Sokolova, Inna M | IKK2, Target/reference ratio |
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Size:
780 data points
Data
| 1 Treat (Condition) | 2 Species | 3 Tissues | 4 Group | 5 Ratio (Cas2, Target/reference ratio) | 6 Ratio (Cas3, Target/reference ratio) | 7 Ratio (Cas8, Target/reference ratio) | 8 Ratio (TAK1, Target/reference ratio) | 9 Ratio (NF-kB, Target/reference ratio) | 10 Ratio (Bcl2, Target/reference ratio) | 11 Ratio (BAX, Target/reference ratio) | 12 Ratio (IKK1, Target/reference ratio) | 13 Ratio (IKK2, Target/reference ratio) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Normoxia (control) | Mytilus edulis | Digestive gland | C | 0.097467 | 9.170938 | 1.555380 | 1.591407 | 3.104843 | 3.780905 | 2.427424 | 1.375256 | 1.229564000 |
| Normoxia (control) | Mytilus edulis | Digestive gland | C | 0.108502 | 14.465660 | 2.482859 | 3.018635 | 5.265063 | 10.125580 | 5.974454 | 1.499793 | 3.016410000 |
| Normoxia (control) | Mytilus edulis | Digestive gland | C | 0.042258 | 12.727530 | 2.188645 | 5.930756 | 5.694146 | 3.898835 | 9.752286 | 1.604105 | 2.031883000 |
| Normoxia (control) | Mytilus edulis | Digestive gland | C | 0.033816 | 13.452840 | 2.311798 | 4.323862 | 3.018420 | 10.995760 | 8.018628 | 0.401113 | 2.725146000 |
| Normoxia (control) | Mytilus edulis | Digestive gland | C | 0.025291 | 11.431660 | 1.968165 | 5.445132 | 4.440786 | 5.507818 | 3.966643 | 0.902814 | 1.696028000 |
| Normoxia (control) | Mytilus edulis | Digestive gland | C | 0.019004 | 12.349910 | 2.108441 | 2.525005 | 3.899410 | 8.999610 | 6.608245 | 0.471687 | 1.903141000 |
| Hypoxia 1 day | Mytilus edulis | Digestive gland | H1 | 7.626787 | 9.867199 | 1.694261 | 4.901151 | 11.997810 | 9.458678 | 3.238781 | 0.181048 | 1.476933000 |
| Hypoxia 1 day | Mytilus edulis | Digestive gland | H1 | 14.206440 | 13.823460 | 2.381150 | 4.087921 | 13.746600 | 10.620840 | 5.488148 | 0.279307 | 2.344213000 |
| Hypoxia 1 day | Mytilus edulis | Digestive gland | H1 | 4.161771 | 8.494462 | 1.451880 | 3.549082 | 13.224420 | 12.133040 | 3.306860 | 0.091055 | 1.916419000 |
| Hypoxia 1 day | Mytilus edulis | Digestive gland | H1 | 15.827190 | 19.288150 | 3.330700 | 3.321799 | 21.121230 | 13.751100 | 4.824441 | 0.446409 | 3.228071000 |
| Hypoxia 1 day | Mytilus edulis | Digestive gland | H1 | 36.019800 | 11.436950 | 1.953113 | 1.870256 | 12.616460 | 7.140871 | 2.068266 | 0.224341 | 2.225219000 |
| Hypoxia 1 day | Mytilus edulis | Digestive gland | H1 | 16.547490 | 13.890220 | 6.310287 | 6.608967 | 20.577870 | 16.072990 | 5.306573 | 0.254226 | 1.764905000 |
| 1 h reoxygenation after 1 day of hypoxia | Mytilus edulis | Digestive gland | R1 | 141.760800 | 26.246880 | 4.602937 | 3.252225 | 23.791880 | 6.989912 | 12.443590 | 0.180440 | 2.614057000 |
| 1 h reoxygenation after 1 day of hypoxia | Mytilus edulis | Digestive gland | R1 | 183.135900 | 27.981230 | 4.936944 | 5.353738 | 20.333940 | 15.077360 | 13.278770 | 0.153363 | 4.830923000 |
| 1 h reoxygenation after 1 day of hypoxia | Mytilus edulis | Digestive gland | R1 | 57.946200 | 32.739200 | 5.759584 | 4.141589 | 35.200010 | 12.044990 | 8.236040 | 0.191316 | 5.125876000 |
| 1 h reoxygenation after 1 day of hypoxia | Mytilus edulis | Digestive gland | R1 | 45.779600 | 23.864630 | 4.176055 | 4.212642 | 19.395550 | 8.668455 | 13.048810 | 0.306951 | 2.846245000 |
| 1 h reoxygenation after 1 day of hypoxia | Mytilus edulis | Digestive gland | R1 | 45.892800 | 25.358210 | 11.782070 | 8.197761 | 30.795290 | 7.489850 | 13.744290 | 0.180079 | 1.811711000 |
| 1 h reoxygenation after 1 day of hypoxia | Mytilus edulis | Digestive gland | R1 | 165.002900 | 31.071340 | 5.452624 | 7.158167 | 21.842480 | 14.034530 | 8.484101 | 0.125022 | 1.764774000 |
| Hypoxia 6 days | Mytilus edulis | Digestive gland | H6 | 10.248150 | 13.909830 | 2.381059 | 5.554310 | 30.287090 | 6.902646 | 9.726687 | 0.254293 | 3.190155000 |
| Hypoxia 6 days | Mytilus edulis | Digestive gland | H6 | 3.029749 | 25.448690 | 4.427493 | 7.371441 | 16.297460 | 13.949800 | 14.179380 | 0.907356 | 6.308364000 |
| Hypoxia 6 days | Mytilus edulis | Digestive gland | H6 | 4.265309 | 25.063190 | 4.387428 | 3.260930 | 34.843420 | 17.805190 | 7.355470 | 0.398260 | 4.738838000 |
| Hypoxia 6 days | Mytilus edulis | Digestive gland | H6 | 8.710418 | 19.394270 | 3.374043 | 4.774736 | 13.816930 | 12.016770 | 5.526945 | 0.450041 | 4.010938000 |
| Hypoxia 6 days | Mytilus edulis | Digestive gland | H6 | 3.408229 | 20.483490 | 3.565158 | 2.768555 | 7.715262 | 13.003300 | 6.329970 | 0.356070 | 3.212194000 |
| Hypoxia 6 days | Mytilus edulis | Digestive gland | H6 | 11.371140 | 30.725790 | 5.404880 | 6.952170 | 11.734060 | 18.563640 | 16.941010 | 0.479316 | 2.828588000 |
| 1 h reoxygenation after 6 days of hypoxia | Mytilus edulis | Digestive gland | R6 | 0.985051 | 17.425570 | 3.010736 | 5.406841 | 14.664210 | 13.602050 | 19.501940 | 0.703963 | 2.128658000 |
| 1 h reoxygenation after 6 days of hypoxia | Mytilus edulis | Digestive gland | R6 | 1.389398 | 17.667610 | 3.072514 | 2.996248 | 11.327060 | 13.740010 | 11.693700 | 1.414055 | 1.926254000 |
| 1 h reoxygenation after 6 days of hypoxia | Mytilus edulis | Digestive gland | R6 | 2.722032 | 25.176680 | 4.425821 | 3.928835 | 8.393495 | 9.641940 | 10.148590 | 0.912337 | 2.891434000 |
| 1 h reoxygenation after 6 days of hypoxia | Mytilus edulis | Digestive gland | R6 | 4.329121 | 23.963350 | 4.186011 | 4.424919 | 11.014130 | 11.461060 | 6.526388 | 0.997665 | 2.502420000 |
| 1 h reoxygenation after 6 days of hypoxia | Mytilus edulis | Digestive gland | R6 | 1.039000 | 25.846090 | 4.553198 | 4.405653 | 19.028990 | 8.938719 | 4.540688 | 0.430238 | 1.953390000 |
| 1 h reoxygenation after 6 days of hypoxia | Mytilus edulis | Digestive gland | R6 | 0.755238 | 16.893140 | 2.949545 | 5.616866 | 19.281370 | 8.710447 | 12.417890 | 0.966756 | 1.548368000 |
| Normoxia (control) | Crassostrea gigas | Digestive gland | C | 0.498213 | 2.144138 | 0.289047 | 1.263391 | 0.441721 | 0.343001 | 0.833703 | 0.799112 | 0.843851482 |
| Normoxia (control) | Crassostrea gigas | Digestive gland | C | 0.768005 | 2.157881 | 0.526015 | 2.283841 | 0.640399 | 0.485691 | 1.063885 | 0.927863 | 0.983458987 |
| Normoxia (control) | Crassostrea gigas | Digestive gland | C | 0.780026 | 2.052290 | 0.540549 | 2.249078 | 0.941915 | 0.602386 | 1.235115 | 1.045248 | 0.934518149 |
| Normoxia (control) | Crassostrea gigas | Digestive gland | C | 0.791615 | 5.216608 | 0.371358 | 1.583223 | 0.926789 | 0.454224 | 1.434581 | 1.056658 | 1.250535737 |
| Normoxia (control) | Crassostrea gigas | Digestive gland | C | 0.896101 | 4.919370 | 0.416214 | 2.889120 | 1.443493 | 0.867837 | 1.198137 | 1.003617 | 1.164823934 |
| Normoxia (control) | Crassostrea gigas | Digestive gland | C | 0.743007 | 5.160606 | 0.471803 | 2.108882 | 0.823671 | 0.532640 | 1.043111 | 1.337031 | 0.639681492 |
| Hypoxia 1 day | Crassostrea gigas | Digestive gland | H1 | 0.839129 | 4.196713 | 0.441200 | 1.552434 | 0.855011 | 0.413419 | 0.409130 | 1.167500 | 1.506103585 |
| Hypoxia 1 day | Crassostrea gigas | Digestive gland | H1 | 0.804883 | 3.586877 | 0.391814 | 1.677494 | 0.733485 | 0.343219 | 0.435630 | 0.959483 | 0.934359447 |
| Hypoxia 1 day | Crassostrea gigas | Digestive gland | H1 | 0.884766 | 3.323190 | 0.612990 | 1.827882 | 1.119108 | 0.508692 | 1.458653 | 1.144899 | 0.739708225 |
| Hypoxia 1 day | Crassostrea gigas | Digestive gland | H1 | 1.185888 | 2.339332 | 0.473032 | 2.206883 | 1.076442 | 0.574703 | 1.311586 | 1.264297 | 0.641985752 |
| Hypoxia 1 day | Crassostrea gigas | Digestive gland | H1 | 1.240951 | 3.488071 | 0.597616 | 3.893107 | 1.081064 | 0.546958 | 1.871279 | 1.728370 | 0.560180835 |
| Hypoxia 1 day | Crassostrea gigas | Digestive gland | H1 | 1.570791 | 4.451674 | 0.585857 | 3.441103 | 1.441604 | 0.719402 | 2.212925 | 1.666407 | 1.380876943 |
| 1 h reoxygenation after 1 day of hypoxia | Crassostrea gigas | Digestive gland | R1 | 0.683093 | 1.528952 | 0.645513 | 1.688764 | 0.916890 | 0.490628 | 1.964293 | 1.045566 | 1.056453100 |
| 1 h reoxygenation after 1 day of hypoxia | Crassostrea gigas | Digestive gland | R1 | 0.884083 | 2.594899 | 0.293327 | 1.835925 | 0.735777 | 0.530072 | 1.063020 | 0.974070 | 0.515522368 |
| 1 h reoxygenation after 1 day of hypoxia | Crassostrea gigas | Digestive gland | R1 | 0.806473 | 2.835392 | 0.470145 | 1.847581 | 1.297105 | 0.540056 | 1.038230 | 1.021367 | 0.434327919 |
| 1 h reoxygenation after 1 day of hypoxia | Crassostrea gigas | Digestive gland | R1 | 0.780643 | 4.104773 | 0.371714 | 1.527014 | 1.032778 | 0.506609 | 1.286573 | 1.197743 | 0.836433287 |
| 1 h reoxygenation after 1 day of hypoxia | Crassostrea gigas | Digestive gland | R1 | 1.098862 | 3.336758 | 0.530826 | 2.636758 | 1.522295 | 0.610111 | 1.986812 | 1.460892 | 1.228237223 |
| 1 h reoxygenation after 1 day of hypoxia | Crassostrea gigas | Digestive gland | R1 | 0.649267 | 2.104798 | 0.445200 | 1.574714 | 0.837314 | 0.406909 | 0.878615 | 0.932387 | 0.831367002 |
| Hypoxia 6 days | Crassostrea gigas | Digestive gland | H6 | 1.396089 | 3.757084 | 1.226171 | 4.348081 | 1.749111 | 1.877666 | 2.225337 | 2.312547 | 2.356399466 |
| Hypoxia 6 days | Crassostrea gigas | Digestive gland | H6 | 0.967438 | 2.426774 | 0.997301 | 3.111605 | 0.858326 | 0.874108 | 1.124373 | 1.105281 | 1.111517347 |
| Hypoxia 6 days | Crassostrea gigas | Digestive gland | H6 | 1.453798 | 2.633940 | 0.971468 | 3.093610 | 1.109667 | 1.127565 | 1.311726 | 1.569051 | 1.368097470 |
| Hypoxia 6 days | Crassostrea gigas | Digestive gland | H6 | 1.486016 | 3.604726 | 0.974163 | 3.173789 | 1.225999 | 1.503530 | 1.571479 | 1.779711 | 1.442736257 |
| Hypoxia 6 days | Crassostrea gigas | Digestive gland | H6 | 1.067510 | 2.957763 | 0.818172 | 2.447336 | 1.136706 | 1.256126 | 1.423469 | 1.365808 | 1.533678722 |
| Hypoxia 6 days | Crassostrea gigas | Digestive gland | H6 | 1.097784 | 2.945515 | 0.662849 | 3.758499 | 0.949331 | 1.162684 | 1.200253 | 1.333302 | 2.546234366 |
| 1 h reoxygenation after 6 days of hypoxia | Crassostrea gigas | Digestive gland | R6 | 1.171832 | 3.324967 | 0.943020 | 2.486964 | 1.100815 | 1.088986 | 1.234545 | 1.321188 | 1.621879152 |
| 1 h reoxygenation after 6 days of hypoxia | Crassostrea gigas | Digestive gland | R6 | 1.345931 | 4.179023 | 0.854213 | 3.808100 | 1.423088 | 1.547953 | 1.320842 | 1.763544 | 2.244525988 |
| 1 h reoxygenation after 6 days of hypoxia | Crassostrea gigas | Digestive gland | R6 | 1.283154 | 4.253256 | 0.593993 | 3.254469 | 0.978401 | 0.956414 | 1.695916 | 1.621548 | 1.722037289 |
| 1 h reoxygenation after 6 days of hypoxia | Crassostrea gigas | Digestive gland | R6 | 0.999813 | 2.868271 | 0.526647 | 2.182469 | 0.860834 | 0.856067 | 1.033195 | 1.002230 | 1.111879143 |
| 1 h reoxygenation after 6 days of hypoxia | Crassostrea gigas | Digestive gland | R6 | 1.383593 | 3.060061 | 0.590469 | 2.196699 | 0.955022 | 1.125483 | 1.801231 | 1.501356 | 1.436953749 |
| 1 h reoxygenation after 6 days of hypoxia | Crassostrea gigas | Digestive gland | R6 | 1.546955 | 3.545251 | 1.081433 | 2.456583 | 1.451950 | 1.032468 | 1.437900 | 1.935749 | 1.510993965 |