Meyer, Britta S; Heckwolf, Melanie; Häsler, Robert; Höppner, Marc P; Eizaguirre, Christophe; Reusch, Thorsten B H (2019): High quality C-to-T SNPs from the genomes of 96 wild caught three-spine sticklebacks [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.909517,

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In supplement to: Heckwolf, Melanie; Meyer, Britta S; Häsler, Robert; Höppner, Marc P; Eizaguirre, Christophe; Reusch, Thorsten B H (2020): Two different epigenetic information channels in wild three-spined sticklebacks are involved in salinity adaptation. Science Advances, 6(12), eaaz1138, https://doi.org/10.1126/sciadv.aaz1138

To improve the methylation estimates in our study, we corrected for SNPs, which could have led to a wrong methylation call. The excluded positions were derived with custom written perl scripts from C-to-T and G-to-A-SNPs with genotype quality of 20 and a minimum allele frequency of 0.005 from the 96 wild caught three-spined sticklebacks with a combination of custom written Perl and R-scripts using packages from methylkit and GenomicRanges. This BED-file contains the C-to-T SNPs, in which the first field is the name of the chromosome; the second describes the start position and the third the end position of the feature in standard chromosomal coordinates.