Citation:

j.scitotenv.2019.136473

Name: Gene expression of the blue mussel Mytilus edulis
Published: 2019-11-21
License: https://creativecommons.org/licenses/by/4.0/
Keywords: antimicrobial peptides; Bivalvia; complement system; gene expression; hemocyte function; immunity; mussels; Mytilus; Osmotic stress; pathogen recognition receptors; Salinity; toxicity; ZnO nanoparticles

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Keyword(s):

antimicrobial peptides; Bivalvia; complement system; gene expression; hemocyte function; immunity; mussels; Mytilus; Osmotic stress; pathogen recognition receptors; Salinity; toxicity; ZnO nanoparticles

Comment:

C1 - C1 complement domain-containing protein; C3q - complement component C3-like protein; C-lectin - membrane-bound C-type lectin, TLR – Toll-like receptors, MyD88 - myeloid differentiation primary response gene 88, HSP70 - 70 kDa heat shock protein; JNK - c-Jun N-terminal kinase; eEF1 - eukaryotic elongation factor 1α

Parameter(s):

#	Name	Short Name	Principal Investigator	Comment
1	Species	Species	Sokolova, Inna M
2	Treatment	Treat	Sokolova, Inna M	Zn treatment
3	Salinity	Sal	Sokolova, Inna M	from/at [psu]
4	Salinity	Sal	Sokolova, Inna M	to [psu]
5	Regime	Regime	Sokolova, Inna M	Acclimated Salinity Regime
6	Sample ID	Sample ID	Sokolova, Inna M
7	Ratio	Ratio	Sokolova, Inna M	C1/eEF1
8	Ratio	Ratio	Sokolova, Inna M	C3q/eEF1
9	Ratio	Ratio	Sokolova, Inna M	TLRa/eEF1
10	Ratio	Ratio	Sokolova, Inna M	TLRb/eEF1
11	Ratio	Ratio	Sokolova, Inna M	TLRc/eEF1
12	Ratio	Ratio	Sokolova, Inna M	lectin/eEF1
13	Ratio	Ratio	Sokolova, Inna M	defensin/eEF1
14	Ratio	Ratio	Sokolova, Inna M	myticin/eEF1
15	Ratio	Ratio	Sokolova, Inna M	mytilin/eEF1
16	Ratio	Ratio	Sokolova, Inna M	MyD88a/eEF1
17	Ratio	Ratio	Sokolova, Inna M	MyD88c/eEF1
18	Ratio	Ratio	Sokolova, Inna M	Hsp70/eEF1
19	Ratio	Ratio	Sokolova, Inna M	JNK/eEF1

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Size:

825 data points

Data

Download dataset as tab-delimited text — use the following character encoding:

1 Species	2 Treat (Zn treatment)	3 Sal (from/at [psu])	4 Sal (to [psu])	5 Regime (Acclimated Salinity Regime)	6 Sample ID	7 Ratio (C1/eEF1)	8 Ratio (C3q/eEF1)	9 Ratio (TLRa/eEF1)	10 Ratio (TLRb/eEF1)	11 Ratio (TLRc/eEF1)	12 Ratio (lectin/eEF1)	13 Ratio (defensin/eEF1)	14 Ratio (myticin/eEF1)	15 Ratio (mytilin/eEF1)	16 Ratio (MyD88a/eEF1)	17 Ratio (MyD88c/eEF1)	18 Ratio (Hsp70/eEF1)	19 Ratio (JNK/eEF1)
Mytilus edulis	control	15		Normal	CNS1	0.6835562	1.5949711	0.1228472	5.0224267	4.0468721	1.3518321	3.8527792	0.2572535	0.0800330	1.2889820	1.2939965	57.1961869	0.0001314
Mytilus edulis	control	15		Normal	CNS2	0.4886824	1.4818151	0.1061808	5.4444073	3.6046482	0.6399916	2.9091613	0.3057688	0.1310221	1.4414912	1.4008476	43.6741176	0.0001457
Mytilus edulis	control	15		Normal	CNS3	0.5148115	1.5593760	0.1068786	6.4397319	4.5147363	0.5753511	2.6779146	0.2930517	0.0837666	1.1632480	1.3439068	57.0678079	0.0001290
Mytilus edulis	control	15		Normal	CNS4	0.8418386	1.5175644	0.1246595	6.3278573	3.9013753	1.3746352	1.2771136	0.4695839	0.1569077	1.1245660	1.1786560	41.0673476	0.0002075
Mytilus edulis	control	15		Normal	CNS5	0.5758641	1.7335131	0.1256594	7.4098805	4.7050021	1.5532073	1.2054844	0.2766487	0.0920085	1.9045736	1.4228804	47.4982206	0.0002153
Mytilus edulis	control	5	15	Fluctuating	CFS1	0.3968201	0.8087495	0.0954951	1.9692790	3.1031774	0.0932000	2.8562359	0.3175374	0.0970970	1.4163446	1.0791658	4.7987757	0.0000788
Mytilus edulis	control	5	15	Fluctuating	CFS2	0.6087691	1.2610125	0.1190201	1.6746210	1.3694834	0.0596179	2.1810247	0.2976398	0.0946014	0.9914260	0.7893264	3.6221980	0.0000690
Mytilus edulis	control	5	15	Fluctuating	CFS3	0.4102154	1.4773680	0.1455848	2.1239705	3.5390164	0.0780186	2.6789827	0.4313187	0.1180141	0.9414351	0.6584329	4.0856189	0.0000871
Mytilus edulis	control	5	15	Fluctuating	CFS4	0.5145448	1.2057521	0.1685699	3.4113553	3.6109165	0.1507523	3.8067007	0.2377216	0.1039470	1.4304070	0.6790936	2.8998247	0.0000674
Mytilus edulis	control	5	15	Fluctuating	CFS5	0.2134616	1.1973720	0.1159935	3.0242684	1.9167450	0.0737788	3.4867630	0.1879079	0.0778823	1.2108592	1.3431047	5.5007970	0.0000927
Mytilus edulis	control	5		Low	CLS1	0.1566076	0.2128827	0.0474198	0.8573919	0.1497545	0.9819905	1.2293479	0.1980209	0.0615540	2.1288772	0.4005710	8.7270778	0.0001246
Mytilus edulis	control	5		Low	CLS2	0.2057960	0.1681451	0.0672235	1.5443685	0.1519362	0.8804451	1.2945412	0.1506633	0.0487018	4.7531150	0.6539361	12.6077034	0.0001019
Mytilus edulis	control	5		Low	CLS3	0.2601232	0.3644327	0.0585719	1.1286935	0.1222092	2.2466155	1.1837157	0.1226211	0.0496350	4.4326599	0.3093751	10.7724648	0.0000738
Mytilus edulis	control	5		Low	CLS4	0.1130240	0.1794065	0.0543204	1.9758137	0.1014909	1.7213801	0.8385929	0.1145515	0.0365191	2.9700218	0.5743696	10.2049222	0.0000905
Mytilus edulis	control	5		Low	CLS5	0.1048832	0.1370385	0.0449785	1.8286842	0.1574617	1.0185832	1.7179573	0.1040919	0.0495514	4.1383158	0.6286380	14.7104322	0.0001345
Mytilus edulis	100 ug l-1 Zn2+	15		Normal	ZnNS1	0.4486365	0.7026351	0.1247564	2.3589814	1.8899110	0.4688551	2.3230793	0.4041000	0.1002806	1.2356042	1.1082694	20.6007001	0.0001883
Mytilus edulis	100 ug l-1 Zn2+	15		Normal	ZnNS2	0.5008388	1.1444907	0.1440526	1.6443681	2.4193648	0.6648096	2.3659426	0.3237722	0.0894920	1.0863820	0.9113387	18.7443919	0.0001293
Mytilus edulis	100 ug l-1 Zn2+	15		Normal	ZnNS3	0.5092897	0.9370639	0.1566246	1.1792256	2.3388457	0.4617076	4.9741464	0.5581637	0.1191730	0.6267397	0.8093074	13.1114669	0.0001209
Mytilus edulis	100 ug l-1 Zn2+	15		Normal	ZnNS4	0.4747512	0.8529096	0.1372561	2.3707697	2.1005119	0.9084032	2.2548280	0.3704280	0.1017948	0.9111500	0.7473925	14.5806017	0.0001226
Mytilus edulis	100 ug l-1 Zn2+	15		Normal	ZnNS5	0.8706752	1.0886634	0.1096741	1.2699416	1.7258364	0.5652773	3.2382394	0.3707012	0.0642122	0.6140828	0.5521468	20.0485299	0.0001389
Mytilus edulis	100 ug l-1 Zn2+	5	15	Fluctuating	ZnFS1	0.6058323	0.9049390	0.0819896	3.0557820	1.0408387	0.6594506	2.2150510	0.2866384	0.0769965	0.6482727	0.6114242	38.4742997	0.0001378
Mytilus edulis	100 ug l-1 Zn2+	5	15	Fluctuating	ZnFS2	0.2709334	1.0343218	0.0795194	4.0433828	1.6330711	0.7199357	1.2182397	0.2538537	0.0699829	1.1546905	0.7297863	28.4024137	0.0001235
Mytilus edulis	100 ug l-1 Zn2+	5	15	Fluctuating	ZnFS3	0.5802335	1.4692078	0.0651939	3.1668395	0.7714004	0.7420241	1.3814115	0.2425965	0.0570257	0.8804235	0.7774639	37.0966976	0.0001467
Mytilus edulis	100 ug l-1 Zn2+	5	15	Fluctuating	ZnFS4	0.6008312	1.3111982	0.1087225	3.5384604	1.8528677	0.7416831	1.6487591	0.2276975	0.0755385	0.7300966	1.4128987	21.6089042	0.0001556
Mytilus edulis	100 ug l-1 Zn2+	5	15	Fluctuating	ZnFS5	0.4137954	0.8290554	0.0736841	2.0180501	1.0567251	0.6383498	1.5868171	0.2004015	0.0559208	0.7478758	0.8608069	24.1296346	0.0001965
Mytilus edulis	100 ug l-1 Zn2+	5		Low	ZnLS1	0.4706385	0.3605414	0.0756604	5.2631272	2.0307348	0.3217231	0.2025378	0.1861609	0.0582102	3.7799485	0.8133444	18.6646317	0.0001598
Mytilus edulis	100 ug l-1 Zn2+	5		Low	ZnLS2	0.3686221	0.4626520	0.0943766	3.2587035	0.9965153	0.4955645	0.1531218	0.1753821	0.0589322	3.4141722	0.9410006	14.5847480	0.0001599
Mytilus edulis	100 ug l-1 Zn2+	5		Low	ZnLS3	0.3203872	0.1752399	0.0643005	3.2810721	1.4521182	0.3466226	0.1091207	0.1112433	0.0542032	2.7092204	0.9715978	12.1729790	0.0001258
Mytilus edulis	100 ug l-1 Zn2+	5		Low	ZnLS4	0.2555392	0.2699613	0.0502266	4.8212259	0.8807963	0.3351558	0.1299579	0.1410036	0.0390544	2.7037694	0.6074972	9.8039069	0.0000991
Mytilus edulis	100 ug l-1 Zn2+	5		Low	ZnLS5	0.5748360	0.2926551	0.0888763	5.4093539	1.3608035	0.4149656	0.1182788	0.1729928	0.0684169	4.0718557	1.5007013	19.8015337	0.0000960
Mytilus edulis	100 ug l-1 Zn as nZnO	15		Normal	ZnONS1	0.3486906	0.5700589	0.1021772	1.8758643	1.5185722	0.0153074	5.6638058	0.4055072	0.1163189	1.3744042	1.4075528	369.3678058	0.0000648
Mytilus edulis	100 ug l-1 Zn as nZnO	15		Normal	ZnONS2	0.2363265	1.0961741	0.1623637	1.4079726	1.2327790	0.0106475	10.1171027	0.2931034	0.1014010	1.2627880	1.6794680	377.5572902	0.0000708
Mytilus edulis	100 ug l-1 Zn as nZnO	15		Normal	ZnONS3	0.3443018	0.9966337	0.1631750	2.0665085	2.9960353	0.0201703	8.8510145	0.2956805	0.0944750	1.3261897	1.3475307	306.9871413	0.0000704
Mytilus edulis	100 ug l-1 Zn as nZnO	15		Normal	ZnONS4	0.3508657	0.9366282	0.0931868	1.7014832	2.7490356	0.0109633	6.4785074	0.2035144	0.0704450	0.8003987	0.8412567	381.9901274	0.0000484
Mytilus edulis	100 ug l-1 Zn as nZnO	15		Normal	ZnONS5	0.4597116	1.0999499	0.1152574	1.4301348	1.7731350	0.0142715	8.4050786	0.2271663	0.0952196	1.4779628	1.0888777	420.4284564	0.0000561
Mytilus edulis	100 ug l-1 Zn as nZnO	5	15	Fluctuating	ZnOFS1	0.6724354	2.0285220	0.1927398	4.3199443	7.2868102	0.0176660	0.6411249	0.2618055	0.0890386	1.1566295	0.7075042	401.3108930	0.0000766
Mytilus edulis	100 ug l-1 Zn as nZnO	5	15	Fluctuating	ZnOFS2	1.2844899	2.7971366	0.3451301	4.8185015	10.7937709	0.0164965	0.4087594	0.1612515	0.0927020	0.7679407	0.5938459	377.7575895	0.0000975
Mytilus edulis	100 ug l-1 Zn as nZnO	5	15	Fluctuating	ZnOFS3	1.8369811	3.0410090	0.2408932	4.2902678	12.6492965	0.0115234	0.6301604	0.2750714	0.1060696	1.3202150	1.0348960	357.7587607	0.0000583
Mytilus edulis	100 ug l-1 Zn as nZnO	5	15	Fluctuating	ZnOFS4	2.1082048	1.4365788	0.2622509	5.4040977	8.8044947	0.0159887	0.4240719	0.1973539	0.1265202	0.8171233	0.7629011	261.1187239	0.0000694
Mytilus edulis	100 ug l-1 Zn as nZnO	5	15	Fluctuating	ZnOFS5	2.7633238	3.1420469	0.2282862	4.7224490	10.8228236	0.0138119	0.3736727	0.2350225	0.1198142	1.0221427	0.9377874	320.9771789	0.0000853
Mytilus edulis	100 ug l-1 Zn as nZnO	5		Low	ZnOLS1	0.1837787	0.4917375	0.1158518	1.2962803	1.2893863	0.0520810	0.0393310	0.1135963	0.0518210	1.6772801	1.0530122	6.9322568	0.0002061
Mytilus edulis	100 ug l-1 Zn as nZnO	5		Low	ZnOLS2	0.0660461	0.1783500	0.0597757	2.5251994	0.7193748	0.0604846	0.0361056	0.1532495	0.0517965	2.2561722	1.0609100	10.2418012	0.0001883
Mytilus edulis	100 ug l-1 Zn as nZnO	5		Low	ZnOLS3	0.1185231	0.1921742	0.0660381	2.4298336	0.6258150	0.0358860	0.0394161	0.1148280	0.0396331	2.5900257	1.2449197	10.5730150	0.0002066
Mytilus edulis	100 ug l-1 Zn as nZnO	5		Low	ZnOLS4	0.0882700	0.3193645	0.0684234	1.2854282	0.6660525	0.0656304	0.0460663	0.1003334	0.0409476	1.9974485	0.8376864	7.5987720	0.0001762
Mytilus edulis	100 ug l-1 Zn as nZnO	5		Low	ZnOLS5	0.1020559	0.4311796	0.0964975	1.3801816	1.1730234	0.0719811	0.0636432	0.1348215	0.0575694	1.6184694	0.9621531	8.0768786	0.0001404