Llanos-Garrido, Alejandro; Pérez-Tris, Javier; Díaz, José A (2019): Genome-wide raw data on local adaptation in a mediterranean lizard [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.908220, Supplement to: Llanos-Garrido, A et al. (2019): The combined use of raw and phylogenetically independent methods of outlier detection uncovers genome‐wide dynamics of local adaptation in a lizard. Ecology and Evolution, 9(24), 14356-14367, https://doi.org/10.1002/ece3.5872
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Abstract:
Raw genomic data for 5 locally adapted populations of a mediterranean lizard. We used the restriction enzyme Pst1 for GBS library preparation. Sequencing was done in an Illumina HiSeq2500 sequencer. The pipeline used for SNPs discovery was UNEAK, implemented in TASSEL v.3.0. After quality and linkage disiquilibrium filtering steps, we obtained a dataset with > 73,000 SNPs. We also provide data on phenotypic variation.
Parameter(s):
| # | Name | Short Name | Unit | Principal Investigator | Method/Device | Comment |
|---|---|---|---|---|---|---|
| 1 | File name | File name | Llanos-Garrido, Alejandro | |||
| 2 | File format | File format | Llanos-Garrido, Alejandro | |||
| 3 | File size | File size | kByte | Llanos-Garrido, Alejandro | ||
| 4 | Uniform resource locator/link to file | URL file | Llanos-Garrido, Alejandro |
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Size:
8 data points
Data
| 1 File name | 2 File format | 3 File size [kByte] | 4 URL file |
|---|---|---|---|
| all.filtered.recode.vcf | zip | 11335 | all.filtered.recode.vcf.zip |
| Phenotypes | zip | 2 | Phenotypes.zip |