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Johnson, Maggie Dorothy; Rodriguez Bravo, Lucia M; O'Connor, Shevonne E; Varley, Nicholas F; Altieri, Andrew H (2019): Seawater carbonate chemistry and maximum quantum yield, net calcification rate of a Caribbean Crustose Coralline Alga [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.907776, Supplement to: Johnson, MD et al. (2019): pH Variability Exacerbates Effects of Ocean Acidification on a Caribbean Crustose Coralline Alga. Frontiers in Marine Science, 6, https://doi.org/10.3389/fmars.2019.00150

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Abstract:
Crustose coralline algae (CCA) are among the most sensitive marine taxa to the pH changes predicted with ocean acidification (OA). However, many CCA exist in habitats where diel cycles in pH can surpass near-future OA projections. The prevailing theory that natural variability increases the tolerance of calcifiers to OA has not been widely tested with tropical CCA. Here, we assess the response of the reef-building species Lithophyllum congestum to stable and variable pH treatments, including an ambient control (amb/stable). The amb/variable treatment simulated an ambient diel cycle in pH (7.65–7.95), OA/stable simulated constant low pH reflecting worst-case year 2100 predictions (7.7), and OA/variable combined diel cycling with lower mean pH (7.45–7.75). We monitored the effects of pH on total calcification rate and photophysiology (maximum quantum yield) over 16 weeks. To assess the potential for acclimatization, we also quantified calcification rates during the first (0–8 weeks), and second (8–16 weeks) halves of the experiment. Calcification rates were lower in all pH treatments relative to ambient controls and photophysiology was unaffected. At the end of the 16-week experiment, total calcification rates were similarly low in the amb/variable and OA/stable treatment (27–29%), whereas rates declined by double in the OA/variable treatment (60%). When comparing the first and second halves of the experiment, there was no acclimatization in stable treatments as calcification rates remained unchanged in both the amb/stable and OA/stable treatments. In contrast, calcification rates deteriorated between periods in the variable treatments: from a 16–47% reduction in the amb/variable treatment to a 49–79% reduction in the OA/variable treatment, relative to controls. Our findings provide compelling evidence that pH variability can heighten CCA sensitivity to reductions in pH. Moreover, the decline in calcification rate over time directly contrasts prevailing theory that variability inherently increases organismal tolerances to low pH, and suggests that mechanisms of tolerance may become limited with increasing time of exposure. The significant role of diel pH cycling in CCA responses to OA indicates that organisms in habitats with diel variability could respond more severely to rapid changes in ocean pH associated with OA than predicted by experiments conducted under static conditions.
Keyword(s):
Benthos; Bottles or small containers/Aquaria (<20 L); Calcification/Dissolution; Coast and continental shelf; Laboratory experiment; Lithophyllum congestum; Macroalgae; North Atlantic; Plantae; Primary production/Photosynthesis; Rhodophyta; Single species; Tropical
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2019): seacarb: seawater carbonate chemistry with R. R package version 3.2.12. https://CRAN.R-project.org/package=seacarb
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2019-10-24.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
TypeTypeJohnson, Maggie Dorothystudy
SpeciesSpeciesJohnson, Maggie Dorothy
Registration number of speciesReg spec noJohnson, Maggie Dorothy
Uniform resource locator/link to referenceURL refJohnson, Maggie DorothyWoRMS Aphia ID
TreatmentTreatJohnson, Maggie Dorothy
Calcification rate of calcium carbonateCalc rate CaCO3mg/mg/dayJohnson, Maggie Dorothy0-16 weeks
Calcification rate, standard errorCalc rate std e±Johnson, Maggie Dorothy0-16 weeks
Calcification rate of calcium carbonateCalc rate CaCO3mg/mg/dayJohnson, Maggie Dorothy0-8 weeks
Calcification rate, standard errorCalc rate std e±Johnson, Maggie Dorothy0-8 weeks
10 Calcification rate of calcium carbonateCalc rate CaCO3mg/mg/dayJohnson, Maggie Dorothy8-16 weeks
11 Calcification rate, standard errorCalc rate std e±Johnson, Maggie Dorothy8-16 weeks
12 Maximum photochemical quantum yield of photosystem IIFv/FmJohnson, Maggie Dorothy
13 Maximum photochemical quantum yield of photosystem II, standard errorFv/Fm std e±Johnson, Maggie Dorothy
14 pHpHJohnson, Maggie Dorothytotal scale
15 pH, standard errorpH std e±Johnson, Maggie Dorothytotal scale
16 pHpHJohnson, Maggie Dorothytotal scale, diel min
17 pH, standard errorpH std e±Johnson, Maggie Dorothytotal scale, diel min
18 pHpHJohnson, Maggie Dorothytotal scale, diel max
19 pH, standard errorpH std e±Johnson, Maggie Dorothytotal scale, diel max
20 pH changeD pHJohnson, Maggie Dorothydiel delta
21 Temperature, waterTemp°CJohnson, Maggie Dorothy
22 Temperature, water, standard errorT std e±Johnson, Maggie Dorothy
23 SalinitySalJohnson, Maggie Dorothy
24 Salinity, standard errorSal std e±Johnson, Maggie Dorothy
25 Alkalinity, totalATµmol/kgJohnson, Maggie Dorothy
26 Alkalinity, total, standard errorAT std e±Johnson, Maggie Dorothy
27 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmJohnson, Maggie Dorothy
28 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air), standard errorpCO2water_SST_wet std e±Johnson, Maggie Dorothy
29 Carbon, inorganic, dissolvedDICµmol/kgJohnson, Maggie Dorothy
30 Carbon, inorganic, dissolved, standard errorDIC std e±Johnson, Maggie Dorothy
31 Calcite saturation stateOmega CalJohnson, Maggie Dorothy
32 Calcite saturation state, standard errorOmega Cal std e±Johnson, Maggie Dorothy
33 Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
34 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
35 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
36 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
37 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
38 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
39 Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
40 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
41 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
164 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Type
(study)

Species

Reg spec no

URL ref
(WoRMS Aphia ID)

Treat

Calc rate CaCO3 [mg/mg/day]
(0-16 weeks)

Calc rate std e [±]
(0-16 weeks)

Calc rate CaCO3 [mg/mg/day]
(0-8 weeks)

Calc rate std e [±]
(0-8 weeks)
10 
Calc rate CaCO3 [mg/mg/day]
(8-16 weeks)
11 
Calc rate std e [±]
(8-16 weeks)
12 
Fv/Fm
13 
Fv/Fm std e [±]
14 
pH
(total scale)
15 
pH std e [±]
(total scale)
16 
pH
(total scale, diel min)
17 
pH std e [±]
(total scale, diel min)
18 
pH
(total scale, diel max)
19 
pH std e [±]
(total scale, diel max)
20 
D pH
(diel delta)
21 
Temp [°C]
22 
T std e [±]
23 
Sal
24 
Sal std e [±]
25 
AT [µmol/kg]
26 
AT std e [±]
27 
pCO2water_SST_wet [µatm]
28 
pCO2water_SST_wet std e [±]
29 
DIC [µmol/kg]
30 
DIC std e [±]
31 
Omega Cal
32 
Omega Cal std e [±]
33 
CSC flag
34 
CO2 [µmol/kg]
35 
fCO2water_SST_wet [µatm]
36 
pCO2water_SST_wet [µatm]
37 
[HCO3]- [µmol/kg]
38 
[CO3]2- [µmol/kg]
39 
DIC [µmol/kg]
40 
Omega Arg
41 
Omega Cal
laboratoryLithophyllum congestum (macroalga)372907marinespecies.orgAmbient/Stable1.5400166110.1578676441.5597050000.1561219731.3757526110.1662297060.4616296300.0108438098.040.0047.920.0078.050.0060.1329.20.0832.20.162134113864184135.210.0689.84378.46379.611618.64209.301837.783.465.21
laboratoryLithophyllum congestum (macroalga)372907marinespecies.orgAmbient/Variable1.1286628330.1009049011.3054350000.1104824190.8214440560.1051495730.4607259260.0087302677.760.0057.670.0057.940.0040.2728.90.0732.20.1621261381510196753.020.03821.26811.74814.221825.04122.511968.812.023.04
laboratoryLithophyllum congestum (macroalga)372907marinespecies.orgOA/Stable1.0967066670.0802277861.1357546670.0968991290.9749294440.0665525130.4626296300.0035400907.700.0047.680.0047.720.0050.0429.00.0732.20.162132159186199062.680.03824.88952.25955.161863.65109.361997.891.802.72
laboratoryLithophyllum congestum (macroalga)372907marinespecies.orgOA/Variable0.6118969440.0520103650.8010815000.0558519730.3320359440.0673073470.4603518520.0120430787.580.0067.450.0097.750.0100.3028.80.0732.20.16212814124112202252.090.03833.911291.731295.681919.8884.842038.631.402.11