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Data Publisher for Earth & Environmental Science

Reintjes, Greta; Fuchs, Bernhard M; Amann, Rudolf; Arnosti, Carol (2019): Short term changes in polysaccharide utilisation during a spring phytoplankton bloom on Helgoland [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.903579

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Abstract:
Spring phytoplankton blooms contribute significantly to global marine primary production. A large fraction of the bloom derived organic matter is available to heterotrophic bacteria in the form of polysaccharides. We analyzed changes in the modes of polysaccharide utilization (selfish uptake and extracellular hydrolysis) during a spring phytoplankton bloom using fluorescently labelled polysaccharide incubations coupled with 16s rRNA sequencing and fluorescence in situ hybridization. We found that in the early bloom phases there was high selfish activity of simple polysaccharides (laminarin) and low extracellular hydrolysis rates of a limited range of polysaccharides. During the course of the bloom both the selfish uptake and extracellular hydrolysis rates increased but only for a limited range of substrates. At the late bloom phase a wide range of substrate was extracellularly hydrolyzed and the level of selfish uptake decreased. We found that during a spring phytoplankton bloom the mode of substrate utilization depended on both the substrates structural complexity and the composition of the heterotrophic community related to the bloom phase.
Supplement to:
Reintjes, Greta; Fuchs, Bernhard M; Scharfe, Mirco; Wiltshire, Karen Helen; Amann, Rudolf; Arnosti, Carol (2020): Short‐term changes in polysaccharide utilization mechanisms of marine bacterioplankton during a spring phytoplankton bloom. Environmental Microbiology, 22(5), 1884-1900, https://doi.org/10.1111/1462-2920.14971
Coverage:
Latitude: 54.188330 * Longitude: 7.900000
Date/Time Start: 2016-03-22T12:00:00 * Date/Time End: 2016-05-03T12:00:00
Minimum DEPTH, water: m * Maximum DEPTH, water: m
Event(s):
HelgolandRoads_site (Kabeltonne) * Latitude: 54.188330 * Longitude: 7.900000 * Elevation: -10.0 m * DEIMS ID: deims.org * Location: German Bight, North Sea * Comment: Samples and Measurements were taken at HelgolandRoads site but independently of Helgoland Roads LTER project
Size:
1448 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Device

Sample label

Depth water [m]

Substrate

Date/Time

Exp day [day]

Sample ID

Sample ID
(ENA)

Size [µm]
10 
Vol [ml]
11 
Bacterioplankton [#/ml]
12 
CF319a [#/ml]
13 
ALT1413 [#/ml]
14 
Microbial abund [#/ml]
(of FLA-substrate stained cells)
15 
Bacteroidetes sub stain [#/ml]
16 
Alteromonadales sub stain [#/ml]
IncubationHEL2016_FLA_substrate_15Laminarin2016-03-22T12:000HEL_1_La_0HEL_1_T0_La0.2206.83E51.30E53.37E21.00E54.48E43.37E2
IncubationHEL2016_FLA_substrate_25Laminarin2016-03-22T12:001HEL_1_La_240.2208.33E52.16E54.57E44.59E4
IncubationHEL2016_FLA_substrate_35Laminarin2016-03-22T12:003HEL_1_La_72Hel_1_T72_La0.2201.02E61.94E50.00E06.32E42.82E30.00E0
IncubationHEL2016_FLA_substrate_45Laminarin2016-03-22T12:006HEL_1_La_144HEL_1_T144_La0.2201.11E63.64E54.29E39.09E42.92E31.79E3
IncubationHEL2016_FLA_substrate_55Laminarin2016-03-22T12:007HEL_1_La_1680.2208.99E51.86E53.18E42.04E43.11E34.92E3
IncubationHEL2016_FLA_substrate_65Xylan2016-03-22T12:000HEL_1_Xy_0Hel_1_T0_Xy0.2206.58E58.80E22.37E48.80E2
IncubationHEL2016_FLA_substrate_75Xylan2016-03-22T12:001HEL_1_Xy_240.2208.02E52.23E51.21E33.10E41.27E41.21E3
IncubationHEL2016_FLA_substrate_85Xylan2016-03-22T12:003HEL_1_Xy_72HEL_1_T72_Xy0.2201.31E64.28E51.55E45.49E42.98E41.57E3
IncubationHEL2016_FLA_substrate_95Xylan2016-03-22T12:006HEL_1_Xy_144HEL_1_T144_Xy0.2201.06E63.26E57.68E41.12E51.21E51.10E4
IncubationHEL2016_FLA_substrate_105Xylan2016-03-22T12:007HEL_1_Xy_1680.2208.55E51.42E59.80E43.35E47.91E37.09E3
IncubationHEL2016_FLA_substrate_115Chondroitin sulfate2016-03-22T12:000HEL_1_Ch_0HEL_1_T0_Ch0.2207.76E51.73E52.09E31.19E42.38E32.09E3
IncubationHEL2016_FLA_substrate_125Chondroitin sulfate2016-03-22T12:001HEL_1_Ch_240.2208.38E52.11E59.00E21.31E43.47E39.00E2
IncubationHEL2016_FLA_substrate_135Chondroitin sulfate2016-03-22T12:003HEL_1_Ch_72HEL_1_T72_Ch0.2201.02E62.99E56.02E32.70E41.72E41.14E3
IncubationHEL2016_FLA_substrate_145Chondroitin sulfate2016-03-22T12:006HEL_1_Ch_144HEL_1_T144_Ch0.2201.06E62.24E54.07E42.74E42.09E43.15E3
IncubationHEL2016_FLA_substrate_155Chondroitin sulfate2016-03-22T12:007HEL_1_Ch_1680.2208.39E51.50E53.26E42.78E47.44E32.08E3
IncubationHEL2016_FLA_substrate_165Arabinogalactan2016-03-22T12:000HEL_1_Ar_0HEL_1_T0_Ar0.2207.55E51.72E50.00E09.50E32.25E30.00E0
IncubationHEL2016_FLA_substrate_175Arabinogalactan2016-03-22T12:001HEL_1_Ar_240.2207.41E51.61E4
IncubationHEL2016_FLA_substrate_185Arabinogalactan2016-03-22T12:003HEL_1_Ar_72HEL_1_T72_Ar0.2201.08E64.34E57.24E31.70E43.63E39.82E2
IncubationHEL2016_FLA_substrate_195Arabinogalactan2016-03-22T12:006HEL_1_Ar_144HEL_1_T144_Ar0.2209.74E51.16E55.14E43.40E43.70E32.65E3
IncubationHEL2016_FLA_substrate_205Arabinogalactan2016-03-22T12:007HEL_1_Ar_1680.2209.20E51.37E52.74E43.50E41.28E42.47E3
IncubationHEL2016_FLA_substrate_215Carrageenan2016-03-22T12:000HEL_1_Ca_0Hel_1_T0_Ca0.2208.15E5
IncubationHEL2016_FLA_substrate_225Carrageenan2016-03-22T12:001HEL_1_Ca_240.2208.53E5
IncubationHEL2016_FLA_substrate_235Carrageenan2016-03-22T12:003HEL_1_Ca_72HEL_1_T72_Ca0.2201.10E6
IncubationHEL2016_FLA_substrate_245Carrageenan2016-03-22T12:006HEL_1_Ca_1440.2201.81E6
IncubationHEL2016_FLA_substrate_255Carrageenan2016-03-22T12:007HEL_1_Ca_1680.2201.48E6
IncubationHEL2016_FLA_substrate_265No substrate2016-03-22T12:000HEL_1_TC_0Hel_1_T0_N0.2207.30E59.00E27.19E39.00E2
IncubationHEL2016_FLA_substrate_275No substrate2016-03-22T12:001HEL_1_TC_240.2207.98E52.12E51.83E31.05E42.89E31.57E3
IncubationHEL2016_FLA_substrate_285No substrate2016-03-22T12:003HEL_1_TC_72HEL_1_T72_N0.2208.02E52.03E51.80E38.70E36.07E34.50E2
IncubationHEL2016_FLA_substrate_295No substrate2016-03-22T12:006HEL_1_TC_144HEL_1_T144_N0.2201.07E62.68E54.50E41.45E49.45E34.58E3
IncubationHEL2016_FLA_substrate_305No substrate2016-03-22T12:007HEL_1_TC_1680.2209.48E52.14E54.33E41.47E45.15E33.30E3
IncubationHEL2016_FLA_substrate_315Laminarin2016-04-05T12:000HEL_2_La_0HEL_2_T0_La0.2205.84E51.33E52.95E49.00E41.66E37.94E3
IncubationHEL2016_FLA_substrate_325Laminarin2016-04-05T12:001HEL_2_La_240.2206.43E52.75E53.11E21.95E53.18E40.00E0
IncubationHEL2016_FLA_substrate_335Laminarin2016-04-05T12:003HEL_2_La_72HEL_2_T72_La0.2209.78E53.77E52.62E42.81E51.28E51.58E3
IncubationHEL2016_FLA_substrate_345Laminarin2016-04-05T12:006HEL_2_La_144Hel_2_T144_La0.2201.52E61.44E55.22E53.17E55.45E44.60E4
IncubationHEL2016_FLA_substrate_355Laminarin2016-04-05T12:009HEL_2_La_2160.2204.32E52.09E49.51E48.65E45.17E31.50E4
IncubationHEL2016_FLA_substrate_365Xylan2016-04-05T12:000HEL_2_Xy_00.2204.78E51.74E55.78E27.94E46.61E41.93E2
IncubationHEL2016_FLA_substrate_375Xylan2016-04-05T12:001HEL_2_Xy_240.2207.11E52.62E51.98E37.22E44.66E31.98E2
IncubationHEL2016_FLA_substrate_385Xylan2016-04-05T12:003HEL_2_Xy_72HEL_2_T72_Xy0.2201.92E61.26E61.02E51.19E55.47E41.07E3
IncubationHEL2016_FLA_substrate_395Xylan2016-04-05T12:006HEL_2_Xy_1440.2201.84E63.57E54.33E51.64E54.58E47.76E3
IncubationHEL2016_FLA_substrate_405Xylan2016-04-05T12:009HEL_2_Xy_2160.2204.76E54.58E43.99E44.35E45.54E31.47E3
IncubationHEL2016_FLA_substrate_415Chondroitin sulfate2016-04-05T12:000HEL_2_Ch_0HEL_2_T0_Ch0.2204.15E51.50E58.31E24.98E47.12E43.11E2
IncubationHEL2016_FLA_substrate_425Chondroitin sulfate2016-04-05T12:001HEL_2_Ch_240.2207.94E53.40E59.22E39.78E42.83E44.50E2
IncubationHEL2016_FLA_substrate_435Chondroitin sulfate2016-04-05T12:003HEL_2_Ch_72HEL_2_T72_Ch0.2201.27E64.69E54.26E41.65E58.83E34.37E3
IncubationHEL2016_FLA_substrate_445Chondroitin sulfate2016-04-05T12:006HEL_2_Ch_144Hel_2_T144_Ch0.2201.39E61.62E25.88E56.83E40.00E01.09E4
IncubationHEL2016_FLA_substrate_455Chondroitin sulfate2016-04-05T12:009HEL_2_Ch_2160.2202.59E56.68E46.03E41.30E42.62E32.38E2
IncubationHEL2016_FLA_substrate_465Arabinogalactan2016-04-05T12:000HEL_2_Ar_0HEL_2_T0_Ar0.2204.40E51.58E54.34E23.53E49.60E32.89E2
IncubationHEL2016_FLA_substrate_475Arabinogalactan2016-04-05T12:001HEL_2_Ar_240.2207.50E51.65E53.40E37.60E41.17E44.86E2
IncubationHEL2016_FLA_substrate_485Arabinogalactan2016-04-05T12:003HEL_2_Ar_72HEL_2_T72_Ar0.2201.66E67.38E58.87E42.07E57.92E41.20E4
IncubationHEL2016_FLA_substrate_495Arabinogalactan2016-04-05T12:006HEL_2_Ar_144Hel_2_T144_Ar0.2208.97E51.15E53.02E59.77E41.95E42.13E4
IncubationHEL2016_FLA_substrate_505Arabinogalactan2016-04-05T12:009HEL_2_Ar_2160.2202.18E51.71E42.48E41.20E42.46E31.35E3
IncubationHEL2016_FLA_substrate_515Carrageenan2016-04-05T12:000HEL_2_Ca_0HEL_2_T0_Ca0.2204.12E5
IncubationHEL2016_FLA_substrate_525Carrageenan2016-04-05T12:001HEL_2_Ca_240.2201.01E6
IncubationHEL2016_FLA_substrate_535Carrageenan2016-04-05T12:003HEL_2_Ca_72HEL_2_T72_Ca0.2201.43E6
IncubationHEL2016_FLA_substrate_545Carrageenan2016-04-05T12:006HEL_2_Ca_144HEL_2_T144_Ca0.2201.91E6
IncubationHEL2016_FLA_substrate_555Carrageenan2016-04-05T12:009HEL_2_Ca_2160.2206.81E5
IncubationHEL2016_FLA_substrate_565No substrate2016-04-05T12:000HEL_2_TC_0HEL_2_T0_N0.2204.03E51.35E58.10E22.65E41.35E44.86E2
IncubationHEL2016_FLA_substrate_575No substrate2016-04-05T12:001HEL_2_TC_240.2206.90E53.05E52.89E35.33E48.87E41.45E2
IncubationHEL2016_FLA_substrate_585No substrate2016-04-05T12:003HEL_2_TC_72Hel_2_T72_N0.2201.27E66.27E53.03E41.16E45.50E33.50E3
IncubationHEL2016_FLA_substrate_595No substrate2016-04-05T12:006HEL_2_TC_144HEL_2_T144_N0.2207.44E51.13E51.54E52.02E45.06E34.05E3
IncubationHEL2016_FLA_substrate_605No substrate2016-04-05T12:009HEL_2_TC_2160.2202.11E51.33E44.03E41.80E44.22E31.35E3
IncubationHEL2016_FLA_substrate_615Laminarin2016-04-19T12:000HEL_3_La_0Hel_3_T0_La0.2207.38E52.52E52.02E31.28E52.95E41.84E2
IncubationHEL2016_FLA_substrate_625Laminarin2016-04-19T12:001HEL_3_La_240.2201.44E66.63E56.24E31.52E58.74E43.37E2
IncubationHEL2016_FLA_substrate_635Laminarin2016-04-19T12:003HEL_3_La_72Hel_3_T72_La0.2202.30E65.97E53.94E52.94E54.09E46.07E3
IncubationHEL2016_FLA_substrate_645Laminarin2016-04-19T12:006HEL_3_La_144Hel_3_T144_La0.2201.90E64.68E53.86E53.78E51.25E53.30E4
IncubationHEL2016_FLA_substrate_655Laminarin2016-04-19T12:009HEL_3_La_2160.2208.33E59.64E42.12E51.49E53.01E43.59E4
IncubationHEL2016_FLA_substrate_665Xylan2016-04-19T12:000HEL_3_Xy_0Hel_3_T0_Xy0.2207.75E52.84E51.46E32.51E46.52E34.86E2
IncubationHEL2016_FLA_substrate_675Xylan2016-04-19T12:001HEL_3_Xy_240.2201.66E67.85E55.69E43.80E4
IncubationHEL2016_FLA_substrate_685Xylan2016-04-19T12:003HEL_3_Xy_72Hel_3_T72_Xy0.2202.47E66.75E51.73E52.49E52.90E46.94E3
IncubationHEL2016_FLA_substrate_695Xylan2016-04-19T12:006HEL_3_Xy_144Hel_3_T144_Xy0.2201.75E64.80E57.39E42.52E56.99E42.77E3
IncubationHEL2016_FLA_substrate_705Xylan2016-04-19T12:009HEL_3_Xy_2160.2206.75E59.12E42.66E48.99E42.18E42.34E3
IncubationHEL2016_FLA_substrate_715Arabinogalactan2016-04-19T12:000HEL_3_Ar_0Hel_3_T0_Ar0.2206.75E52.61E51.66E31.79E49.11E30.00E0
IncubationHEL2016_FLA_substrate_725Arabinogalactan2016-04-19T12:001HEL_3_Ar_240.2201.69E68.93E59.60E34.70E41.26E41.50E2
IncubationHEL2016_FLA_substrate_735Arabinogalactan2016-04-19T12:003HEL_3_Ar_72Hel_3_T72_Ar0.2202.59E61.06E62.02E52.76E51.36E42.27E3
IncubationHEL2016_FLA_substrate_745Arabinogalactan2016-04-19T12:006HEL_3_Ar_144Hel_3_T144_Ar0.2201.32E63.99E51.08E51.99E55.81E42.89E3
IncubationHEL2016_FLA_substrate_755Arabinogalactan2016-04-19T12:009HEL_3_Ar_2160.2205.87E51.02E51.98E48.30E45.03E41.30E3
IncubationHEL2016_FLA_substrate_765Carrageenan2016-04-19T12:000HEL_3_Ca_0Hel_3_T0_Ca0.2205.95E5
IncubationHEL2016_FLA_substrate_775Carrageenan2016-04-19T12:001HEL_3_Ca_240.2201.67E6
IncubationHEL2016_FLA_substrate_785Carrageenan2016-04-19T12:003HEL_3_Ca_72Hel_3_T72_Ca0.2203.16E6
IncubationHEL2016_FLA_substrate_795Carrageenan2016-04-19T12:006HEL_3_Ca_144Hel_3_T144_Ca0.2202.27E6
IncubationHEL2016_FLA_substrate_805Carrageenan2016-04-19T12:009HEL_3_Ca_2160.2201.24E6
IncubationHEL2016_FLA_substrate_815No substrate2016-04-19T12:000HEL_3_TC_0Hel_3_T0_N0.2207.89E52.59E52.65E31.46E44.25E34.19E2
IncubationHEL2016_FLA_substrate_825No substrate2016-04-19T12:001HEL_3_TC_240.2201.99E68.64E51.51E41.20E47.11E32.70E2
IncubationHEL2016_FLA_substrate_835No substrate2016-04-19T12:003HEL_3_TC_72Hel_3_T72_N0.2202.69E61.06E61.48E52.05E41.37E44.50E2
IncubationHEL2016_FLA_substrate_845No substrate2016-04-19T12:006HEL_3_TC_1440.2201.49E66.20E51.18E51.09E44.61E32.53E2
IncubationHEL2016_FLA_substrate_855No substrate2016-04-19T12:009HEL_3_TC_2160.2207.21E51.34E59.09E44.31E49.16E31.05E3
IncubationHEL2016_FLA_substrate_865Laminarin2016-05-03T12:000HEL_4_La_0Hel_4_T0_La0.2201.19E63.65E51.56E23.04E51.00E51.56E2
IncubationHEL2016_FLA_substrate_875Laminarin2016-05-03T12:001HEL_4_La_240.2201.97E67.48E51.70E34.65E51.35E51.31E2
IncubationHEL2016_FLA_substrate_885Laminarin2016-05-03T12:003HEL_4_La_72Hel_4_T72_La0.2201.99E65.31E53.44E54.64E51.74E52.22E4
IncubationHEL2016_FLA_substrate_895Laminarin2016-05-03T12:006HEL_4_La_144Hel_4_T144_La0.2209.10E51.08E56.85E41.29E52.64E48.88E3
IncubationHEL2016_FLA_substrate_905Laminarin2016-05-03T12:009HEL_4_La_2160.2206.37E57.63E41.01E45.55E42.23E42.30E3
IncubationHEL2016_FLA_substrate_915Xylan2016-05-03T12:000HEL_4_Xy_0Hel_4_T0_Xy0.2201.19E62.96E54.76E24.68E46.07E32.38E2
IncubationHEL2016_FLA_substrate_925Xylan2016-05-03T12:001HEL_4_Xy_240.2202.26E69.95E54.86E32.05E57.56E41.62E2
IncubationHEL2016_FLA_substrate_935Xylan2016-05-03T12:003HEL_4_Xy_72Hel_4_T72_Xy0.2201.51E64.00E51.74E52.40E57.35E41.37E4
IncubationHEL2016_FLA_substrate_945Xylan2016-05-03T12:006HEL_4_Xy_144Hel_4_T144_Xy0.2209.44E51.20E52.52E41.08E54.50E32.34E3
IncubationHEL2016_FLA_substrate_955Xylan2016-05-03T12:009HEL_4_Xy_2160.2206.05E56.16E42.34E31.93E41.64E33.20E2
IncubationHEL2016_FLA_substrate_965Chondroitin sulfate2016-05-03T12:000HEL_4_Ch_0Hel_4_T0_Ch0.2201.30E63.53E54.91E21.41E44.53E33.68E2
IncubationHEL2016_FLA_substrate_975Chondroitin sulfate2016-05-03T12:001HEL_4_Ch_240.2202.28E69.64E52.87E33.10E41.03E40.00E0
IncubationHEL2016_FLA_substrate_985Chondroitin sulfate2016-05-03T12:003HEL_4_Ch_72Hel_4_T72_Ch0.2201.47E65.02E52.43E31.44E51.19E42.70E2
IncubationHEL2016_FLA_substrate_995Chondroitin sulfate2016-05-03T12:006HEL_4_Ch_144Hel_4_T144_Ch0.2208.65E51.79E53.75E42.03E48.73E36.39E2
IncubationHEL2016_FLA_substrate_1005Chondroitin sulfate2016-05-03T12:009HEL_4_Ch_2160.2207.33E52.55E51.63E41.47E42.13E38.38E2
IncubationHEL2016_FLA_substrate_1015Arabinogalactan2016-05-03T12:000HEL_4_Ar_0Hel_4_T0_Ar0.2201.26E63.85E51.56E21.58E47.29E30.00E0
IncubationHEL2016_FLA_substrate_1025Arabinogalactan2016-05-03T12:001HEL_4_Ar_240.2202.36E61.02E62.65E33.57E41.51E46.23E2
IncubationHEL2016_FLA_substrate_1035Arabinogalactan2016-05-03T12:003HEL_4_Ar_72Hel_4_T72_Ar0.2201.97E65.59E51.12E52.14E54.99E43.00E3
IncubationHEL2016_FLA_substrate_1045Arabinogalactan2016-05-03T12:006HEL_4_Ar_144Hel_4_T144_Ar0.2207.52E51.47E52.11E42.59E45.74E32.75E3
IncubationHEL2016_FLA_substrate_1055Arabinogalactan2016-05-03T12:009HEL_4_Ar_2160.2208.80E51.63E56.46E36.82E43.61E47.66E2
IncubationHEL2016_FLA_substrate_1065Carrageenan2016-05-03T12:000HEL_4_Ca_0Hel_4_T0_Ca0.2201.21E6
IncubationHEL2016_FLA_substrate_1075Carrageenan2016-05-03T12:001HEL_4_Ca_240.2201.56E6
IncubationHEL2016_FLA_substrate_1085Carrageenan2016-05-03T12:003HEL_4_Ca_72Hel_4_T72_Ca0.2201.40E6
IncubationHEL2016_FLA_substrate_1095Carrageenan2016-05-03T12:006HEL_4_Ca_144Hel_4_T144_Ca0.2201.15E6
IncubationHEL2016_FLA_substrate_1105Carrageenan2016-05-03T12:009HEL_4_Ca_2160.2201.17E6
IncubationHEL2016_FLA_substrate_1115No substrate2016-05-03T12:000HEL_4_TC_0Hel_4_T0_N0.2201.39E63.98E57.46E21.39E47.09E32.13E2
IncubationHEL2016_FLA_substrate_1125No substrate2016-05-03T12:001HEL_4_TC_240.2202.31E69.27E51.12E32.07E41.21E40.00E0
IncubationHEL2016_FLA_substrate_1135No substrate2016-05-03T12:003HEL_4_TC_72Hel_4_T72_N0.2201.70E66.07E54.60E31.32E58.50E41.09E2
IncubationHEL2016_FLA_substrate_1145No substrate2016-05-03T12:006HEL_4_TC_144Hel_4_T144_N0.2206.35E51.02E51.99E41.86E43.71E31.77E3
IncubationHEL2016_FLA_substrate_1155No substrate2016-05-03T12:009HEL_4_TC_2160.2208.49E58.03E47.20E31.52E45.57E31.57E3