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Zhao, Liqiang; Yang, Feng; Milano, Stefania; Han, Tiankun; Walliser, Eric Otto; Schöne, Bernd R (2018): Seawater carbonate chemistry and growth, physiological performance of the Manila clam Ruditapes philippinarum [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.902985, Supplement to: Zhao, L et al. (2018): Transgenerational acclimation to seawater acidification in the Manila clam Ruditapes philippinarum: Preferential uptake of metabolic carbon. Science of the Total Environment, 627, 95-103, https://doi.org/10.1016/j.scitotenv.2018.01.225

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Abstract:
Ocean acidification may interfere with the calcifying physiology of marine bivalves. Therefore, understanding their capacity for acclimation and adaption to low pH over multiple generations is crucial to make predictions about the fate of this economically and ecologically important fauna in an acidifying ocean. Transgenerational exposure to an acidification scenario projected by the end of the century (i.e., pH 7.7) has been shown to confer resilience to juvenile offspring of the Manila clam, Ruditapes philippinarum. However, whether, and to what extent, this resilience can persist into adulthood are unknown and the mechanisms driving transgenerational acclimation remain poorly understood. The present study takes observations of Manila clam juveniles further into the adult stage and observes similar transgenerational responses. Under acidified conditions, clams originating from parents reproductively exposed to the same level of low pH show a significantly faster shell growth rate, a higher condition index and a lower standard metabolic rate than those without prior history of transgenerational acclimation. Further analyses of stable carbon isotopic signatures in dissolved inorganic carbon of seawater, individual soft tissues and shells reveal that up to 61% of shell carbonate comes from metabolic carbon, suggesting that transgenerationally acclimated clams may preferentially extract internal metabolic carbon rather than transport external seawater inorganic carbon to build shells, the latter known to be energetically expensive. While a large metabolic carbon contribution (45%) is seen in non-acclimated clams, a significant reduction in the rate of shell growth indicates it might occur at the expense of other calcification-relevant processes. It therefore seems plausible that, following transgenerational acclimation, R. philippinarum can implement a less costly and more efficient energy-utilizing strategy to mitigate the impact of seawater acidification. Collectively, our findings indicate that marine bivalves are more resilient to ocean acidification projected for the end of the century than previously thought.
Keyword(s):
Animalia; Benthic animals; Benthos; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Growth/Morphology; Laboratory experiment; Mollusca; North Pacific; Other studied parameter or process; Respiration; Ruditapes philippinarum; Single species; Temperate
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2019): seacarb: seawater carbonate chemistry with R. R package version 3.2.12. https://CRAN.R-project.org/package=seacarb
Coverage:
Latitude: 39.070670 * Longitude: 122.246170
Date/Time Start: 2014-04-01T00:00:00 * Date/Time End: 2014-04-30T00:00:00
Event(s):
Liangshui_Bay * Latitude: 39.070670 * Longitude: 122.246170 * Date/Time Start: 2014-04-01T00:00:00 * Date/Time End: 2014-04-30T00:00:00 * Method/Device: Experiment (EXP)
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2019-06-26.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
TypeTypeZhao, Liqiangstudy
SpeciesSpeciesZhao, Liqiang
Registration number of speciesReg spec noZhao, Liqiang
Uniform resource locator/link to referenceURL refZhao, LiqiangWoRMS Aphia ID
TreatmentTreatZhao, Liqiang
Growth rateµµm/dayZhao, Liqiang
Growth rate, standard deviationµ std dev±Zhao, Liqiang
Condition indexCIZhao, Liqiang
Condition index, standard deviationCI std dev±Zhao, Liqiang
10 Metabolic rate of oxygenMR O2mg/kg/hZhao, Liqiangstandard
11 Metabolic rate of oxygen, standard deviationMR O2 std dev±Zhao, Liqiangstandard
12 δ13Cδ13C‰ PDBZhao, Liqiangtissue
13 δ13C, standard deviationδ13C std dev±Zhao, Liqiangtissue
14 δ13Cδ13C‰ PDBZhao, Liqiangshell
15 δ13C, standard deviationδ13C std dev±Zhao, Liqiangshell
16 PercentagePerc%Zhao, Liqiangrelative contribution of seawater DIC to shell carbonate
17 PercentagePerc%Zhao, Liqiangrelative contribution of metabolic carbon to shell carbonate in
18 Temperature, waterTemp°CZhao, Liqiang
19 Temperature, water, standard deviationTemp std dev±Zhao, Liqiang
20 SalinitySalZhao, Liqiang
21 Salinity, standard deviationSal std dev±Zhao, Liqiang
22 pHpHZhao, Liqiangtotal scale
23 pH, standard deviationpH std dev±Zhao, Liqiangtotal scale
24 Alkalinity, totalATµmol/kgZhao, Liqiang
25 Alkalinity, total, standard deviationAT std dev±Zhao, Liqiang
26 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmZhao, Liqiang
27 Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Zhao, Liqiang
28 Carbon, inorganic, dissolvedDICµmol/kgZhao, Liqiang
29 Carbon, inorganic, dissolved, standard deviationDIC std dev±Zhao, Liqiang
30 Bicarbonate ion[HCO3]-µmol/kgZhao, Liqiang
31 Bicarbonate ion, standard deviation[HCO3]- std dev±Zhao, Liqiang
32 Carbonate ion[CO3]2-µmol/kgZhao, Liqiang
33 Carbonate ion, standard deviation[CO3]2- std dev±Zhao, Liqiang
34 δ13C, dissolved inorganic carbonδ13C DIC‰ PDBZhao, Liqiang
35 δ13C, dissolved inorganic carbon, standard deviationδ13C DIC std dev±Zhao, Liqiang
36 Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
37 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
38 Carbon dioxide, standard deviationCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
39 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
40 Fugacity of carbon dioxide in seawater, standard deviationfCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
41 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
42 Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
43 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
44 Bicarbonate ion, standard deviation[HCO3]- std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
45 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
46 Carbonate ion, standard deviation[CO3]2- std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
47 Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
48 Carbon, inorganic, dissolved, standard deviationDIC std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
49 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
50 Aragonite saturation state, standard deviationOmega Arg std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
51 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
52 Calcite saturation state, standard deviationOmega Cal std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
208 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Type
(study)

Species

Reg spec no

URL ref
(WoRMS Aphia ID)

Treat

µ [µm/day]

µ std dev [±]

CI

CI std dev [±]
10 
MR O2 [mg/kg/h]
(standard)
11 
MR O2 std dev [±]
(standard)
12 
δ13C [‰ PDB]
(tissue)
13 
δ13C std dev [±]
(tissue)
14 
δ13C [‰ PDB]
(shell)
15 
δ13C std dev [±]
(shell)
16 
Perc [%]
(relative contribution of seaw...)
17 
Perc [%]
(relative contribution of meta...)
18 
Temp [°C]
19 
Temp std dev [±]
20 
Sal
21 
Sal std dev [±]
22 
pH
(total scale)
23 
pH std dev [±]
(total scale)
24 
AT [µmol/kg]
25 
AT std dev [±]
26 
pCO2water_SST_wet [µatm]
27 
pCO2 std dev [±]
28 
DIC [µmol/kg]
29 
DIC std dev [±]
30 
[HCO3]- [µmol/kg]
31 
[HCO3]- std dev [±]
32 
[CO3]2- [µmol/kg]
33 
[CO3]2- std dev [±]
34 
δ13C DIC [‰ PDB]
35 
δ13C DIC std dev [±]
36 
CSC flag
(Calculated using seacarb afte...)
37 
CO2 [µmol/kg]
(Calculated using seacarb afte...)
38 
CO2 std dev [±]
(Calculated using seacarb afte...)
39 
fCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
40 
fCO2 std dev [±]
(Calculated using seacarb afte...)
41 
pCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
42 
pCO2 std dev [±]
(Calculated using seacarb afte...)
43 
[HCO3]- [µmol/kg]
(Calculated using seacarb afte...)
44 
[HCO3]- std dev [±]
(Calculated using seacarb afte...)
45 
[CO3]2- [µmol/kg]
(Calculated using seacarb afte...)
46 
[CO3]2- std dev [±]
(Calculated using seacarb afte...)
47 
DIC [µmol/kg]
(Calculated using seacarb afte...)
48 
DIC std dev [±]
(Calculated using seacarb afte...)
49 
Omega Arg
(Calculated using seacarb afte...)
50 
Omega Arg std dev [±]
(Calculated using seacarb afte...)
51 
Omega Cal
(Calculated using seacarb afte...)
52 
Omega Cal std dev [±]
(Calculated using seacarb afte...)
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.orgNon-acclimated line*7.717.431.053.831.211050330-20.150.74-13.340.48554519.980.7630.310.587.690.03224954102286216459204858835-12.570.25834.112.841025.4983.231028.9983.512052.9852.1680.606.482167.6954.011.280.121.990.18
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.orgNon-acclimated line*8.119.311.445.271.15460380-19.600.62-4.580.10732719.980.7630.310.588.040.032251674083720296018495416514-2.840.42813.761.26413.8036.84415.2136.971854.5862.96163.0112.352031.3564.612.590.234.030.36
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.orgTrans.-acclimated line*7.718.821.595.561.00670450-19.780.97-14.310.08396119.980.7630.310.587.700.022297319996022053620853687412.750.32833.981.991021.8156.471025.2956.662093.2531.0384.105.202211.3331.481.340.102.080.16
laboratoryRuditapes philippinarum (mollusk)231750marinespecies.orgTrans.-acclimated line*8.119.731.684.821.21600150-19.661.03-4.620.11732719.980.7630.310.588.020.062258434337620402618662616120-2.770.20814.572.41438.1771.82439.6672.071875.3959.00157.4219.362047.3949.792.500.333.890.51