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Data Publisher for Earth & Environmental Science

Kapsenberg, Lydia; Miglioli, A; Bitter, M C; Tambutté, Eric; Dumollard, R; Gattuso, Jean-Pierre (2019): Developmental morphology data of mussel larvae grown in static and fluctuating pH treatments [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.899830, In: Kapsenberg, L et al. (2018): Seawater carbonate chemistry and developmental morphology data, shell length dataof mussel larvae grown in static and fluctuating pH treatments, biological data of mussel larvae treated with fluorescent dyes and grown in two pH treatments [dataset publication series]. PANGAEA, https://doi.org/10.1594/PANGAEA.899833

Always quote citation above when using data! You can download the citation in several formats below.

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Related to:
Kapsenberg, Lydia; Miglioli, A; Bitter, M C; Tambutté, Eric; Dumollard, R; Gattuso, Jean-Pierre (2018): Ocean pH fluctuations affect mussel larvae at key developmental transitions. Proceedings of the Royal Society B-Biological Sciences, 285(1893), 20182381, https://doi.org/10.1098/rspb.2018.2381
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Proye, Aurélien; Soetaert, Karline; Rae, James (2016): seacarb: seawater carbonate chemistry with R. R package version 3.1. https://cran.r-project.org/package=seacarb
Coverage:
Median Latitude: 43.548500 * Median Longitude: 5.503500 * South-bound Latitude: 43.415000 * West-bound Longitude: 3.688000 * North-bound Latitude: 43.682000 * East-bound Longitude: 7.319000
Date/Time Start: 2016-10-11T00:00:00 * Date/Time End: 2017-02-09T00:00:00
Event(s):
Thau_Lagoon  * Latitude: 43.415000 * Longitude: 3.688000 * Date/Time: 2016-10-11T00:00:00 * Method/Device: Experiment (EXP)
Villefranche_sur_Mer  * Latitude: 43.682000 * Longitude: 7.319000 * Date/Time: 2017-02-09T00:00:00 * Method/Device: Experiment (EXP)
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2016) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2019-03-25.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
Event labelEventKapsenberg, Lydia
TypeTypeKapsenberg, Lydiastudy
SpeciesSpeciesKapsenberg, Lydia
Registration number of speciesReg spec noKapsenberg, Lydia
Uniform resource locator/link to referenceURL refKapsenberg, LydiaWoRMS Aphia ID
ExperimentExpKapsenberg, Lydia
TreatmentTreatKapsenberg, Lydia
IdentificationIDKapsenberg, Lydiabucket
Time in hoursTimehKapsenberg, Lydiaage of mussel larvae
10 IdentificationIDKapsenberg, Lydiafamily_pair_ID
11 LarvaeLarvae#Kapsenberg, Lydianormally developed D-veliger larvae
12 LarvaeLarvae#Kapsenberg, Lydiaunfertilized eggs
13 LarvaeLarvae#Kapsenberg, Lydiain the trochophore stage with no visible shell development
14 LarvaeLarvae#Kapsenberg, Lydiadead D-veliger
15 LarvaeLarvae#Kapsenberg, LydiaD-veliger larvae with an abnormal shell hinge
16 LarvaeLarvae#Kapsenberg, LydiaD-veliger larvae with abnormal/protruding mantle tissue
17 LarvaeLarvae#Kapsenberg, LydiaD-veliger larvae with both an abnormal shell hinge and abnormal mantle
18 LarvaeLarvae#Kapsenberg, Lydiatotal observed per larval culture
19 pHpHKapsenberg, Lydiatotal scale, min
20 Aragonite saturation stateOmega ArgKapsenberg, Lydiamin
21 RatioRatioKapsenberg, Lydia[HCO3-]/[H+](mol/µmol, min)
22 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmKapsenberg, Lydiamin
23 pHpHKapsenberg, Lydiamax
24 Aragonite saturation stateOmega ArgKapsenberg, Lydiamax
25 RatioRatioKapsenberg, Lydia[HCO3-]/[H+](mol/µmol, max)
26 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmKapsenberg, Lydiamax
27 Temperature, waterTemp°CKapsenberg, Lydia
28 Temperature, water, standard deviationTemp std dev±Kapsenberg, Lydia
29 SalinitySalKapsenberg, Lydia
30 Salinity, standard deviationSal std dev±Kapsenberg, Lydia
31 Alkalinity, totalATµmol/kgKapsenberg, Lydia
32 Alkalinity, total, standard deviationAT std dev±Kapsenberg, Lydia
33 Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
34 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)max
35 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)max
36 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)max
37 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)max
38 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)min
39 Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)max
40 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)min
41 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)min
42 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)min
43 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)min
44 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)min
45 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)min
46 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)max
47 Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)min
48 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)max
49 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)max
Size:
2208 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Event

Type
(study)

Species

Reg spec no

URL ref
(WoRMS Aphia ID)

Exp

Treat

ID
(bucket)

Time [h]
(age of mussel larvae)
10 
ID
(family_pair_ID)
11 
Larvae [#]
(normally developed D-veliger ...)
12 
Larvae [#]
(unfertilized eggs)
13 
Larvae [#]
(in the trochophore stage with...)
14 
Larvae [#]
(dead D-veliger)
15 
Larvae [#]
(D-veliger larvae with an abno...)
16 
Larvae [#]
(D-veliger larvae with abnorma...)
17 
Larvae [#]
(D-veliger larvae with both an...)
18 
Larvae [#]
(total observed per larval cul...)
19 
pH
(total scale, min)
20 
Omega Arg
(min)
21 
Ratio
([HCO3-]/[H+](mol/µmol, min))
22 
pCO2water_SST_wet [µatm]
(min)
23 
pH
(max)
24 
Omega Arg
(max)
25 
Ratio
([HCO3-]/[H+](mol/µmol, max))
26 
pCO2water_SST_wet [µatm]
(max)
27 
Temp [°C]
28 
Temp std dev [±]
29 
Sal
30 
Sal std dev [±]
31 
AT [µmol/kg]
32 
AT std dev [±]
33 
CSC flag
34 
CO2 [µmol/kg]
(max)
35 
fCO2water_SST_wet [µatm]
(max)
36 
pCO2water_SST_wet [µatm]
(max)
37 
[HCO3]- [µmol/kg]
(max)
38 
[CO3]2- [µmol/kg]
(min)
39 
DIC [µmol/kg]
(max)
40 
Omega Arg
(min)
41 
Omega Cal
(min)
42 
CO2 [µmol/kg]
(min)
43 
fCO2water_SST_wet [µatm]
(min)
44 
pCO2water_SST_wet [µatm]
(min)
45 
[HCO3]- [µmol/kg]
(min)
46 
[CO3]2- [µmol/kg]
(max)
47 
DIC [µmol/kg]
(min)
48 
Omega Arg
(max)
49 
Omega Cal
(max)
Thau_Lagoon laboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_1pH7.8---1311060000401107.781.600.147847.821.770.1588614.40.038.20.2255611832.83876.09879.292291.49107.602431.911.612.5129.64791.10793.992268.83116.812415.281.752.72
Thau_LagoonlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_1pH7.8---2321110000001117.781.600.147847.821.770.1588614.40.038.20.2255611832.83876.09879.292291.49107.602431.911.612.5129.64791.10793.992268.83116.812415.281.752.72
Thau_LagoonlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_1pH7.8---3331051000501117.781.600.147847.821.770.1588614.40.038.20.2255611832.83876.09879.292291.49107.602431.911.612.5129.64791.10793.992268.83116.812415.281.752.72
Thau_LagoonlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_1pH7.8+/-0.243112102010411387.641.200.104368.052.750.24125214.30.038.10.125612846.901247.151251.722364.5879.952491.431.201.8616.28433.02434.602110.27183.412309.972.754.28
Thau_LagoonlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_1pH7.8+/-0.25321270411901427.641.200.104368.052.750.24125214.30.038.10.125612846.901247.151251.722364.5879.952491.431.201.8616.28433.02434.602110.27183.412309.972.754.28
Thau_LagoonlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_1pH7.8+/-0.26331150001301197.641.200.104368.052.750.24125214.30.038.10.125612846.901247.151251.722364.5879.952491.431.201.8616.28433.02434.602110.27183.412309.972.754.28
Thau_LagoonlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_1pH7.8+/-0.47311120105311227.390.690.063208.163.380.29232214.30.038.20.225569886.072289.922298.312441.6646.532574.260.701.0811.99319.05320.212003.18224.772239.943.375.24
Thau_LagoonlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_1pH7.8+/-0.483210601011301217.390.690.063208.163.380.29232214.30.038.20.225569886.072289.922298.312441.6646.532574.260.701.0811.99319.05320.212003.18224.772239.943.375.24
Thau_LagoonlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_1pH7.8+/-0.493311709033471707.390.690.063208.163.380.29232214.30.038.20.225569886.072289.922298.312441.6646.532574.260.701.0811.99319.05320.212003.18224.772239.943.375.24
Thau_LagoonlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_1pH7.8-/+0.4103151081237161157.370.670.063118.173.450.30243214.30.038.30.225583890.312404.162412.982448.2744.652583.230.671.0411.66310.28311.421993.67229.402234.733.445.34
Thau_LagoonlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_1pH7.8-/+0.4113210400011821257.370.670.063118.173.450.30243214.30.038.30.225583890.312404.162412.982448.2744.652583.230.671.0411.66310.28311.421993.67229.402234.733.445.34
Thau_LagoonlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_1pH7.8-/+0.4123310002161521267.370.670.063118.173.450.30243214.30.038.30.225583890.312404.162412.982448.2744.652583.230.671.0411.66310.28311.421993.67229.402234.733.445.34
Villefranche_sur_Mer laboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_2pH7.4---13A37080656151227.400.720.0622047.410.730.06225314.40.038.50.125677883.982245.132253.352448.4848.232580.690.721.1281.982191.662199.692445.8449.302577.130.741.15
Villefranche_sur_MerlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_2pH7.4---23B980102841137.400.720.0622047.410.730.06225314.40.038.50.125677883.982245.132253.352448.4848.232580.690.721.1281.982191.662199.692445.8449.302577.130.741.15
Villefranche_sur_MerlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_2pH7.4---33C106015011901417.400.720.0622047.410.730.06225314.40.038.50.125677883.982245.132253.352448.4848.232580.690.721.1281.982191.662199.692445.8449.302577.130.741.15
Villefranche_sur_MerlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_2pH8.1---43A1240101101278.093.000.263648.113.120.2738614.30.038.50.125602814.53387.33388.752070.31198.982283.822.984.6313.76366.59367.942051.80206.492272.053.094.80
Villefranche_sur_MerlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_2pH8.1---53B1370000201398.093.000.263648.113.120.2738614.30.038.50.125602814.53387.33388.752070.31198.982283.822.984.6313.76366.59367.942051.80206.492272.053.094.80
Villefranche_sur_MerlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_2pH8.1---63C1420021101468.093.000.263648.113.120.2738614.30.038.50.125602814.53387.33388.752070.31198.982283.822.984.6313.76366.59367.942051.80206.492272.053.094.80
Villefranche_sur_MerlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_2pH7.4-^-73A1221100201267.390.700.063208.163.390.29229514.30.038.50.125591885.982291.442299.842443.7646.862576.600.701.0911.96318.86320.032002.42226.122240.503.385.26
Villefranche_sur_MerlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_2pH7.4-^-83B1370310201437.390.700.063208.163.390.29229514.30.038.50.125591885.982291.442299.842443.7646.862576.600.701.0911.96318.86320.032002.42226.122240.503.385.26
Villefranche_sur_MerlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_2pH7.4-^-93C1130001501197.390.700.063208.163.390.29229514.30.038.50.125591885.982291.442299.842443.7646.862576.600.701.0911.96318.86320.032002.42226.122240.503.385.26
Villefranche_sur_MerlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_2pH8.1-v-103A14001018511657.260.530.043508.133.200.27314714.40.038.50.1255918117.063129.283140.752472.2935.282624.630.530.8212.97346.67347.942030.37214.792258.143.215.00
Villefranche_sur_MerlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_2pH8.1-v-113B1215404221387.260.530.043508.133.200.27314714.40.038.50.1255918117.063129.283140.752472.2935.282624.630.530.8212.97346.67347.942030.37214.792258.143.215.00
Villefranche_sur_MerlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_2pH8.1-v-123C11901110501367.260.530.043508.133.200.27314714.40.038.50.1255918117.063129.283140.752472.2935.282624.630.530.8212.97346.67347.942030.37214.792258.143.215.00
Villefranche_sur_MerlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_3pH7.4---13pooled820601130141437.400.720.0620817.430.770.07224214.40.038.40.125605883.812239.332247.532442.0148.002573.830.721.1277.962083.002090.622433.9851.272563.210.771.19
Villefranche_sur_MerlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_3pH7.4---23pooled91000102481337.400.720.0620817.430.770.07224214.40.038.40.125605883.812239.332247.532442.0148.002573.830.721.1277.962083.002090.622433.9851.272563.210.771.19
Villefranche_sur_MerlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_3pH7.4---33pooled44030345161117.400.720.0620817.430.770.07224214.40.038.40.125605883.812239.332247.532442.0148.002573.830.721.1277.962083.002090.622433.9851.272563.210.771.19
Villefranche_sur_MerlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_3pH8.1---43pooled1270000101288.092.990.263738.113.080.2638914.40.038.40.1256412814.53388.15389.572073.15199.602287.282.994.6513.75367.37368.712054.60207.142275.493.104.82
Villefranche_sur_MerlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_3pH8.1---53pooled1210101101248.092.990.263738.113.080.2638914.40.038.40.1256412814.53388.15389.572073.15199.602287.282.994.6513.75367.37368.712054.60207.142275.493.104.82
Villefranche_sur_MerlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_3pH8.1---63pooled1190100001208.092.990.263738.113.080.2638914.40.038.40.1256412814.53388.15389.572073.15199.602287.282.994.6513.75367.37368.712054.60207.142275.493.104.82
Villefranche_sur_MerlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_3pH7.4-^-73pooled1150000801237.400.720.064218.062.820.24222614.30.038.40.125606884.032238.202246.402442.4347.832574.280.721.1115.79420.62422.162098.03187.792301.602.814.37
Villefranche_sur_MerlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_3pH7.4-^-83pooled1070001501137.400.720.064218.062.820.24222614.30.038.40.125606884.032238.202246.402442.4347.832574.280.721.1115.79420.62422.162098.03187.792301.602.814.37
Villefranche_sur_MerlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_3pH7.4-^-93pooled1060001201097.400.720.064218.062.820.24222614.30.038.40.125606884.032238.202246.402442.4347.832574.280.721.1115.79420.62422.162098.03187.792301.602.814.37
Villefranche_sur_MerlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_3pH8.1-v-103pooled8800127301197.250.520.043528.133.180.27319314.40.038.40.1255878119.913203.833215.582473.4334.422627.760.520.8012.98346.73348.002030.58214.362257.913.214.99
Villefranche_sur_MerlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_3pH8.1-v-113pooled11120018001317.250.520.043528.133.180.27319314.40.038.40.1255878119.913203.833215.582473.4334.422627.760.520.8012.98346.73348.002030.58214.362257.913.214.99
Villefranche_sur_MerlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_3pH8.1-v-123pooled77020171631157.250.520.043528.133.180.27319314.40.038.40.1255878119.913203.833215.582473.4334.422627.760.520.8012.98346.73348.002030.58214.362257.913.214.99
Villefranche_sur_MerlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_4pH7.41311250001001267.380.680.0610877.701.350.12235614.20.138.50.025631888.432349.712358.342450.5345.752584.710.681.0640.391073.291077.222338.6391.212470.241.362.12
Villefranche_sur_MerlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_4pH7.4+calcein23249010729351217.380.680.0610877.701.350.12235614.20.138.50.025631888.432349.712358.342450.5345.752584.710.681.0640.391073.291077.222338.6391.212470.241.362.12
Villefranche_sur_MerlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_4pH7.433353180744181317.380.680.0610877.701.350.12235614.20.138.50.025631888.432349.712358.342450.5345.752584.710.681.0640.391073.291077.222338.6391.212470.241.362.12
Villefranche_sur_MerlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_4pH8.14311360001301408.082.930.253638.123.110.2739614.20.138.50.125611814.99398.26399.722081.67194.772291.422.914.5313.43356.77358.082044.72209.772267.923.144.88
Villefranche_sur_MerlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_4pH8.1+calcein5321110400401198.082.930.253638.123.110.2739614.20.138.50.125611814.99398.26399.722081.67194.772291.422.914.5313.43356.77358.082044.72209.772267.923.144.88
Villefranche_sur_MerlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_4pH8.1+calcein6341340000001348.082.930.253638.123.110.2739614.20.138.50.125611814.99398.26399.722081.67194.772291.422.914.5313.43356.77358.082044.72209.772267.923.144.88
Villefranche_sur_MerlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_4pH7.4+calcein734360101125381117.380.680.0610877.701.350.12235614.20.138.50.025631888.432349.712358.342450.5345.752584.710.681.0640.391073.291077.222338.6391.212470.241.362.12
Villefranche_sur_MerlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_4pH7.483597010132011327.380.680.0610877.701.350.12235614.20.138.50.025631888.432349.712358.342450.5345.752584.710.681.0640.391073.291077.222338.6391.212470.241.362.12
Villefranche_sur_MerlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_4pH8.1103398145011301588.082.930.253638.123.110.2739614.20.138.50.125611814.99398.26399.722081.67194.772291.422.914.5313.43356.77358.082044.72209.772267.923.144.88
Villefranche_sur_MerlaboratoryMytilus galloprovincialis (mollusk)140481marinespecies.orgEXP_4pH8.111351200200111248.082.930.253638.123.110.2739614.20.138.50.125611814.99398.26399.722081.67194.772291.422.914.5313.43356.77358.082044.72209.772267.923.144.88