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Data Publisher for Earth & Environmental Science

Roelfsema, Christiaan M; Kovacs, Eva M; Markey, Kathryn; Phinn, Stuart R (2018): Benthic and substrate cover data derived from field photo-transect surveys from Tijou Reef in the Far Northern management region of the Great Barrier Reef [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.891718, In: Roelfsema, CM et al. (2018): Benthic and substrate cover data derived from field photo-transect surveys for the Far Northern management region of the Great Barrier Reef [dataset publication series]. PANGAEA, https://doi.org/10.1594/PANGAEA.891736

Always quote citation above when using data! You can download the citation in several formats below.

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Related to:
Beijbom, Oscar; Edmunds, Peter J; Roelfsema, Christiaan M; Smith, Jennifer E; Kline, David I; Neal, Benjamin P; Dunlap, Matthew J; Moriarty, Vincent; Fan, Tung-Yung; Tan, Chih-Jui; Chan, Stephen; Treibitz, Tali; Gamst, Anthony; Mitchell, Brian G; Kriegman, David (2015): Towards automated annotation of benthic survey images: Variability of human experts and operational modes of automation. PLoS ONE, 10(7), e0130312, https://doi.org/10.1371/journal.pone.0130312
González-Rivero, Manuel; Beijbom, Oscar; Rodriguez-Ramirez, Alberto; Holtrop, Tadzio; González-Marrero, Yeray; Ganase, Anjani; Roelfsema, Christiaan M; Phinn, Stuart R; Hoegh-Guldberg, Ove (2016): Scaling up ecological measurements of coral reefs using semi-automated field image collection and analysis. Remote Sensing, 8(1), 30, https://doi.org/10.3390/rs8010030
Further details:
Roelfsema, Christiaan M; Grol, Monique; González-Rivero, Manuel; Phinn, Stuart R (2018): Georeferenced photographs of benthic photoquadrats acquired along transects from Tijou Reef in the Far North region of the Great Barrier Reef, December, 2017. PANGAEA, https://doi.org/10.1594/PANGAEA.891495
Coverage:
Median Latitude: -13.069746 * Median Longitude: 143.946186 * South-bound Latitude: -13.077730 * West-bound Longitude: 143.942396 * North-bound Latitude: -13.050293 * East-bound Longitude: 143.957804
Date/Time Start: 2017-11-19T09:08:59 * Date/Time End: 2017-11-19T16:54:24
Event(s):
Tijou_Reef * Latitude: -13.069750 * Longitude: 143.946200 * Date/Time Start: 2017-11-19T09:08:59 * Date/Time End: 2017-11-19T16:54:24 * Location: Coral Sea * Method/Device: Multiple investigations (MULT)
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1 DATE/TIMEDate/TimeRoelfsema, Christiaan MGeocode
2 LATITUDELatitudeRoelfsema, Christiaan MGeocode
3 LONGITUDELongitudeRoelfsema, Christiaan MGeocode
4 Method commentMethod commRoelfsema, Christiaan M
5 File nameFile nameRoelfsema, Christiaan M
6 Uniform resource locator/link to imageURL imageRoelfsema, Christiaan M
7 Acropora, coverAcropora cov%Roelfsema, Christiaan MACR_BRA: Acropora formosa, branching Montipera
8 Acropora, coverAcropora cov%Roelfsema, Christiaan MACR_BRA_B_: Acropora formosa, branching Montipera - Bleached
9 Acroporidae, coverAcroporidae cov%Roelfsema, Christiaan MACR_HIP: Acroporidae Hispidoes; thick branches, predominantly hispidose
10 Acroporidae, coverAcroporidae cov%Roelfsema, Christiaan MACR_HIP_B_: Acroporidae Hispidoes; thick branches, predominantly hispidose - Bleached
11 Acroporidae, coverAcroporidae cov%Roelfsema, Christiaan MACR_OTH: Acroporids with indeterminate shape, predominantly cuneiform
12 Acroporidae, coverAcroporidae cov%Roelfsema, Christiaan MACR_OTH_B_: Acroporids with indeterminate shape, predominantly cuneiform - Bleached
13 Montipora, coverMontipora cov%Roelfsema, Christiaan MACR_PE: Encrusting Monipora
14 Montipora, coverMontipora cov%Roelfsema, Christiaan MACR_PE_B_: Encrusting Monipora - Bleached
15 Acropora, coverAcropora cov%Roelfsema, Christiaan MBRA_DIG_Ac: Acropora digitate, branches resembling fingers
16 Acropora, coverAcropora cov%Roelfsema, Christiaan MBRA_DIG_B_: Acropora digitate, branches resembling fingers - Bleached
17 Coral cover, branching coralsCover branch cor%Roelfsema, Christiaan MBRA_OTH: Branching other
18 Coral cover, branching coralsCover branch cor%Roelfsema, Christiaan MBRA_OTH_B_: Branching other - Bleached
19 Acropora, coverAcropora cov%Roelfsema, Christiaan MBRA_TAB_Ac: Acropora tabular/coryrombose/plate
20 Acropora, coverAcropora cov%Roelfsema, Christiaan MBRA_TAB_B_: Acropora tabular/coryrombose/plate - Bleached
21 Favia, coverFavia cov%Roelfsema, Christiaan MFAV_MUS: Favia, Favites, Platygyra, Goniastrea, Diploasrea, Lobophyllia
22 Favia, coverFavia cov%Roelfsema, Christiaan MFAV_MUS_B_: Favia, Favites, Platygyra, Goniastrea, Diploasrea, Lobophyllia - Bleached
23 Corals indeterminata, coverCoral indet cov%Roelfsema, Christiaan MMASE_OTH: Massive, submassive, encrusting colonies of undetermined taxonomic group
24 Corals indeterminata, coverCoral indet cov%Roelfsema, Christiaan MMASEoth_B_: Massive, submassive, encrusting colonies of undetermined taxonomic group - Bleached
25 Corals indeterminata, coverCoral indet cov%Roelfsema, Christiaan MOTH_HC: Other HC not assinged to any other category
26 Corals indeterminata, coverCoral indet cov%Roelfsema, Christiaan MOTH_HC_B_: Other HC not assinged to any other category - Bleached
27 Pocilloporidae, coverPocilloporidae cov%Roelfsema, Christiaan MPOCI: Pocilloporidae sp. (includes Seriatopora and Stylophora)
28 Pocilloporidae, coverPocilloporidae cov%Roelfsema, Christiaan MPOCI_B_: Pocilloporidae sp. (includes Seriatopora and Stylophora) - Bleached
29 Porites cylindrica, coverP. cylindrica cov%Roelfsema, Christiaan MPOR_BRA: Porites cylindrica, Goniopora (Poritidae branching)
30 Porites cylindrica, coverP. cylindrica cov%Roelfsema, Christiaan MPOR_BRA_B_: Porites cylindrica, Goniopora (Poritidae branching) - Bleached
31 Porites lichen, coverP. lichen cov%Roelfsema, Christiaan MPOR_ENC: Porites lichen (Poritidae encrusting)
32 Porites lichen, coverP. lichen cov%Roelfsema, Christiaan MPOR_ENC_B_: Porites lichen (Poritidae encrusting) - Bleached
33 Porites lobata, coverP. lobata cov%Roelfsema, Christiaan MPOR_MASS: Porites lobata, P. lutea (Poritide massive)
34 Porites lobata, coverP. lobata cov%Roelfsema, Christiaan MPOR_MASS_B_: Porites lobata, P. lutea (Poritide massive) - Bleached
35 Corals indeterminata, coverCoral indet cov%Roelfsema, Christiaan MTFP_RDG_Al: Thin, foliose or plating colonies with visible relief structures on the plates
36 Corals indeterminata, coverCoral indet cov%Roelfsema, Christiaan MTFP_RDG_B_: Thin, foliose or plating colonies with visible relief structures on the plates -Bleached
37 Corals indeterminata, coverCoral indet cov%Roelfsema, Christiaan MTFP_RND_Al: Thin, foliose or plating colonies with visible rounded corallits on the plates
38 Corals indeterminata, coverCoral indet cov%Roelfsema, Christiaan MTFP_RND_B_: Thin, foliose or plating colonies with visible rounded corallits on the plates - Bleached
39 Alcyoniidae, coverAlcyoniidae cov%Roelfsema, Christiaan MALC_SF: Common large fleshy Alcyoniidae representatives
40 Alcyoniidae, coverAlcyoniidae cov%Roelfsema, Christiaan MALC_SF_B_: Common large fleshy Alcyoniidae representatives - Bleached
41 Gorgonia, coverGorgonia cov%Roelfsema, Christiaan MGORG: Sea Fans/Plumes; Gorgonia, Pseudopterogorgia
42 Gorgonia, coverGorgonia cov%Roelfsema, Christiaan MGORG_B_: Sea Fans/Plumes; Gorgonia, Pseudopterogorgia - Bleached
43 Acanthaster planci, coverA. planci cov%Roelfsema, Christiaan MMINV_COTS: Crown of thorns sea star, Acanthaster planci
44 Invertebrata, coverInvert cov%Roelfsema, Christiaan MMOB_INV: Mobile invertebrates 1 (sea cucumber, cots, urchin)
45 Soft corals, other, coverSoft corals oth cov%Roelfsema, Christiaan MOTH_SF: Other soft coral (not sea fans)
46 Soft corals, other, coverSoft corals oth cov%Roelfsema, Christiaan MOTH_SF_B_: Other soft coral (not sea fans) - Bleached
47 Invertebrata, coverInvert cov%Roelfsema, Christiaan MOTH_SINV: Other sessile invertebrates (zoanthids, anemones, corallimorphs, sponges, clams, etc )
48 Sand, coverSand cov%Roelfsema, Christiaan MSand
49 Other, coverOther cov%Roelfsema, Christiaan MOther: All other
50 Other, coverOther cov%Roelfsema, Christiaan MTAPE: Line or hardware
51 Other, coverOther cov%Roelfsema, Christiaan MUnk: Unknown, but represents something (annotator doesn't know what it is)
52 Other, coverOther cov%Roelfsema, Christiaan MUnc: Unclear; point falls in a shadowy, blurry, dark area
53 Background, coverBackground cov%Roelfsema, Christiaan MWATE: Blue background
54 Algae, coverAlgae cov%Roelfsema, Christiaan MALG_OTH: Other algae
55 Benthic microalgae, coverBenth microalgae cov%Roelfsema, Christiaan MBMA_sand: BMA on sand
56 Coralline algae, coverCorall algae cov%Roelfsema, Christiaan MCAL_CCA_DC: CCA on dead coral
57 Coralline algae, coverCorall algae cov%Roelfsema, Christiaan MCAL_CCA_RB: CCA on rubble
58 Caulerpa sp., coverCaulerpa sp. cov%Roelfsema, Christiaan MCaul: Caulerpa sp., green algae
59 Chlorodesmis sp., coverChlorodesmis sp. cov%Roelfsema, Christiaan MChlor: Chlorodesmis sp (turtle weed); green filamentous
60 Cyanobacteria, coverCyanobact cov%Roelfsema, Christiaan MCya_spe: Cyanobacterium sp.
61 Dictyota sp., coverDictyota sp. cov%Roelfsema, Christiaan MDicsp: Dictyota sp.
62 Epithelial algal matrix, coverEpith algal matrix cov%Roelfsema, Christiaan MEAM_DHC: Epithelial algal matrix smothering dead hard coral (Turf on Rock)
63 Epithelial algal matrix, coverEpith algal matrix cov%Roelfsema, Christiaan MEAM_RB: Epithelial algal matrix smothering rubble (Turf on Rubble)
64 Lobophora, coverLobophora cov%Roelfsema, Christiaan MLobph: Lobophora; fleshy algae
65 Halimeda sp., coverHalimeda sp. cov%Roelfsema, Christiaan MMACR_Cal_H: Calicifying algae: Halimeda
66 Sargassum sp., coverSargassum sp. cov%Roelfsema, Christiaan MMAECBS: Erect Course Branching Brown: Sargassum sp.
67 Padina sp., coverPadina sp. cov%Roelfsema, Christiaan MPad: Padina sp. (pencil shavings)
68 Turbinaria sp., coverTurbinaria sp. cov%Roelfsema, Christiaan MTurbin: Turbinaria sp.
69 Seagrass, coverSeagr cov%Roelfsema, Christiaan MSeagrass: Seagrass, any type
License:
Creative Commons Attribution 3.0 Unported (CC-BY-3.0)
Size:
15114 data points

Data

Download dataset as tab-delimited text — use the following character encoding:

1 
Date/Time		2 
Latitude		3 
Longitude		4 
Method comm		5 
File name		6 
URL image		7 
Acropora cov [%]
(ACR_BRA: Acropora formosa, br...)		8 
Acropora cov [%]
(ACR_BRA_B_: Acropora formosa,...)		9 
Acroporidae cov [%]
(ACR_HIP: Acroporidae Hispidoe...)		10 
Acroporidae cov [%]
(ACR_HIP_B_: Acroporidae Hispi...)		11 
Acroporidae cov [%]
(ACR_OTH: Acroporids with inde...)		12 
Acroporidae cov [%]
(ACR_OTH_B_: Acroporids with i...)		13 
Montipora cov [%]
(ACR_PE: Encrusting Monipora)		14 
Montipora cov [%]
(ACR_PE_B_: Encrusting Monipor...)		15 
Acropora cov [%]
(BRA_DIG_Ac: Acropora digitate...)		16 
Acropora cov [%]
(BRA_DIG_B_: Acropora digitate...)		17 
Cover branch cor [%]
(BRA_OTH: Branching other)		18 
Cover branch cor [%]
(BRA_OTH_B_: Branching other -...)		19 
Acropora cov [%]
(BRA_TAB_Ac: Acropora tabular/...)		20 
Acropora cov [%]
(BRA_TAB_B_: Acropora tabular/...)		21 
Favia cov [%]
(FAV_MUS: Favia, Favites, Plat...)		22 
Favia cov [%]
(FAV_MUS_B_: Favia, Favites, P...)		23 
Coral indet cov [%]
(MASE_OTH: Massive, submassive...)		24 
Coral indet cov [%]
(MASEoth_B_: Massive, submassi...)		25 
Coral indet cov [%]
(OTH_HC: Other HC not assinged...)		26 
Coral indet cov [%]
(OTH_HC_B_: Other HC not assin...)		27 
Pocilloporidae cov [%]
(POCI: Pocilloporidae sp. (inc...)		28 
Pocilloporidae cov [%]
(POCI_B_: Pocilloporidae sp. (...)		29 
P. cylindrica cov [%]
(POR_BRA: Porites cylindrica, ...)		30 
P. cylindrica cov [%]
(POR_BRA_B_: Porites cylindric...)		31 
P. lichen cov [%]
(POR_ENC: Porites lichen (Pori...)		32 
P. lichen cov [%]
(POR_ENC_B_: Porites lichen (P...)		33 
P. lobata cov [%]
(POR_MASS: Porites lobata, P. ...)		34 
P. lobata cov [%]
(POR_MASS_B_: Porites lobata, ...)		35 
Coral indet cov [%]
(TFP_RDG_Al: Thin, foliose or ...)		36 
Coral indet cov [%]
(TFP_RDG_B_: Thin, foliose or ...)		37 
Coral indet cov [%]
(TFP_RND_Al: Thin, foliose or ...)		38 
Coral indet cov [%]
(TFP_RND_B_: Thin, foliose or ...)		39 
Alcyoniidae cov [%]
(ALC_SF: Common large fleshy A...)		40 
Alcyoniidae cov [%]
(ALC_SF_B_: Common large flesh...)		41 
Gorgonia cov [%]
(GORG: Sea Fans/Plumes; Gorgon...)		42 
Gorgonia cov [%]
(GORG_B_: Sea Fans/Plumes; Gor...)		43 
A. planci cov [%]
(MINV_COTS: Crown of thorns se...)		44 
Invert cov [%]
(MOB_INV: Mobile invertebrates...)		45 
Soft corals oth cov [%]
(OTH_SF: Other soft coral (not...)		46 
Soft corals oth cov [%]
(OTH_SF_B_: Other soft coral (...)		47 
Invert cov [%]
(OTH_SINV: Other sessile inver...)		48 
Sand cov [%]
(Sand)		49 
Other cov [%]
(Other: All other)		50 
Other cov [%]
(TAPE: Line or hardware)		51 
Other cov [%]
(Unk: Unknown, but represents ...)		52 
Other cov [%]
(Unc: Unclear; point falls in ...)		53 
Background cov [%]
(WATE: Blue background)		54 
Algae cov [%]
(ALG_OTH: Other algae)		55 
Benth microalgae cov [%]
(BMA_sand: BMA on sand)		56 
Corall algae cov [%]
(CAL_CCA_DC: CCA on dead coral)		57 
Corall algae cov [%]
(CAL_CCA_RB: CCA on rubble)		58 
Caulerpa sp. cov [%]
(Caul: Caulerpa sp., green algae)		59 
Chlorodesmis sp. cov [%]
(Chlor: Chlorodesmis sp (turtl...)		60 
Cyanobact cov [%]
(Cya_spe: Cyanobacterium sp.)		61 
Dictyota sp. cov [%]
(Dicsp: Dictyota sp.)		62 
Epith algal matrix cov [%]
(EAM_DHC: Epithelial algal mat...)		63 
Epith algal matrix cov [%]
(EAM_RB: Epithelial algal matr...)		64 
Lobophora cov [%]
(Lobph: Lobophora; fleshy algae)		65 
Halimeda sp. cov [%]
(MACR_Cal_H: Calicifying algae...)		66 
Sargassum sp. cov [%]
(MAECBS: Erect Course Branchin...)		67 
Padina sp. cov [%]
(Pad: Padina sp. (pencil shavi...)		68 
Turbinaria sp. cov [%]
(Turbin: Turbinaria sp.)		69 
Seagr cov [%]
(Seagrass: Seagrass, any type)
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